Wall clock time and date at job start Mon Mar 30 2020 03:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46976 * 2 1 4 4 H 1.09006 * 109.47210 * 178.12471 * 3 2 1 5 5 C 1.50702 * 109.47165 * 58.12593 * 3 2 1 6 6 H 1.08000 * 119.99847 * 275.41424 * 5 3 2 7 7 C 1.37876 * 119.99970 * 95.41137 * 5 3 2 8 8 N 1.31513 * 120.00007 * 187.92878 * 7 5 3 9 9 Si 1.86803 * 119.99879 * 7.92823 * 7 5 3 10 10 H 1.48498 * 109.47055 * 84.89439 * 9 7 5 11 11 H 1.48504 * 109.47159 * 204.89453 * 9 7 5 12 12 H 1.48498 * 109.47348 * 324.89315 * 9 7 5 13 13 S 1.80998 * 109.47429 * 298.12776 * 3 2 1 14 14 C 1.76204 * 99.99862 * 287.91886 * 13 3 2 15 15 N 1.29761 * 124.95179 * 174.16029 * 14 13 3 16 16 C 1.32099 * 116.85323 * 179.97438 * 15 14 13 17 17 C 1.33337 * 114.58549 * 359.97438 * 16 15 14 18 18 S 1.70969 * 124.95344 * 353.84607 * 14 13 3 19 19 H 1.09004 * 109.47028 * 303.92595 * 1 2 3 20 20 H 1.08997 * 109.47527 * 63.92419 * 1 2 3 21 21 H 1.09002 * 109.46768 * 183.93029 * 1 2 3 22 22 H 1.09002 * 109.47300 * 240.00541 * 2 1 3 23 23 H 1.08994 * 109.47687 * 120.00070 * 2 1 3 24 24 H 0.97005 * 119.99548 * 180.02562 * 8 7 5 25 25 H 1.08000 * 122.70790 * 180.02562 * 16 15 14 26 26 H 1.08005 * 125.94394 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1295 1.4427 0.0336 5 6 1.5000 2.1662 1.2066 6 1 0.5186 2.6158 1.1722 7 6 2.2588 2.2543 2.3544 8 7 1.7324 2.7461 3.4546 9 14 4.0347 1.6749 2.3466 10 1 4.9098 2.7679 1.8519 11 1 4.4399 1.3023 3.7259 12 1 4.1663 0.4939 1.4561 13 16 1.4826 2.2796 -1.5049 14 6 2.5143 1.4891 -2.6946 15 7 2.4343 1.6598 -3.9785 16 6 3.2906 0.9853 -4.7247 17 6 4.1323 0.2102 -4.0402 18 16 3.7719 0.3912 -2.3254 19 1 -0.3633 0.5736 0.8528 20 1 -0.3634 0.4517 -0.9230 21 1 -0.3633 -1.0253 0.0704 22 1 1.8933 -0.5137 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 2.2664 2.8084 4.2620 25 1 3.3080 1.0566 -5.8022 26 1 4.9031 -0.4170 -4.4633 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040676808.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:36 Heat of formation + Delta-G solvation = 14.106781 kcal Electronic energy + Delta-G solvation = -11798.205581 eV Core-core repulsion = 9707.943070 eV Total energy + Delta-G solvation = -2090.262511 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 229.029 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.30328 -36.82872 -34.09376 -31.29462 -29.56696 -26.73779 -25.46489 -22.31732 -21.46829 -19.80027 -18.90327 -17.59127 -16.65692 -15.96090 -15.74610 -15.41467 -15.15287 -14.69687 -14.48605 -14.31484 -12.97234 -12.86253 -12.73946 -12.46006 -12.29379 -12.07031 -11.80306 -11.37959 -11.17699 -10.85837 -10.78051 -10.45671 -10.19630 -8.44374 -8.43130 -6.47542 -0.34462 0.18400 0.36970 0.85855 1.31699 1.34679 1.41835 1.73404 1.84239 2.24681 2.97951 3.74353 4.09793 4.30186 4.40216 4.41234 4.57447 4.80807 5.03269 5.11594 5.17667 5.22797 5.44888 5.61835 6.05398 6.53512 6.65100 7.11476 8.70532 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.034766 B = 0.010427 C = 0.009347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.184209 B = 2684.636843 C = 2994.938684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C 0.039 3.961 4 H 0.060 0.940 5 C -0.492 4.492 6 H 0.051 0.949 7 C 0.041 3.959 8 N -0.918 5.918 9 Si 0.915 3.085 10 H -0.265 1.265 11 H -0.275 1.275 12 H -0.235 1.235 13 S -0.066 6.066 14 C 0.013 3.987 15 N -0.498 5.498 16 C 0.034 3.966 17 C -0.254 4.254 18 S 0.117 5.883 19 H 0.046 0.954 20 H 0.052 0.948 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.275 0.725 25 H 0.208 0.792 26 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.555 -7.962 -11.270 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.153 4.153 3 C -0.090 4.090 4 H 0.077 0.923 5 C -0.534 4.534 6 H 0.069 0.931 7 C -0.163 4.163 8 N -0.555 5.555 9 Si 0.738 3.262 10 H -0.190 1.190 11 H -0.200 1.200 12 H -0.158 1.158 13 S 0.172 5.828 14 C -0.371 4.371 15 N -0.218 5.218 16 C -0.119 4.119 17 C -0.397 4.397 18 S 0.366 5.634 19 H 0.065 0.935 20 H 0.071 0.929 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.225 0.775 26 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 5.687 -7.049 -10.512 13.876 hybrid contribution 1.402 -0.585 -0.352 1.559 sum 7.089 -7.634 -10.864 15.052 Atomic orbital electron populations 1.21658 0.94868 1.01141 1.01775 1.21914 0.97961 0.94661 1.00788 1.21706 0.99000 0.96145 0.92137 0.92251 1.20360 1.03112 1.35501 0.94440 0.93073 1.25697 1.02068 0.94050 0.94462 1.69964 1.38720 1.44975 1.01819 0.86169 0.80273 0.80871 0.78911 1.18978 1.19985 1.15843 1.86101 1.47616 1.50653 0.98436 1.28874 1.04222 1.04848 0.99206 1.66741 1.26898 1.26039 1.02127 1.22366 0.92133 0.94718 1.02643 1.27366 1.08767 1.09548 0.94058 1.84249 1.28642 1.40945 1.09576 0.93470 0.92924 0.91771 0.92502 0.91480 0.91510 0.77532 0.76766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 9.43 71.98 0.68 -4.50 15 2 C -0.11 -4.39 5.46 30.59 0.17 -4.22 15 3 C 0.04 1.71 1.51 29.85 0.05 1.75 15 4 H 0.06 2.59 4.19 -2.39 -0.01 2.58 15 5 C -0.49 -25.92 7.51 25.60 0.19 -25.73 15 6 H 0.05 3.03 7.90 -2.91 -0.02 3.00 15 7 C 0.04 2.19 5.47 84.65 0.46 2.65 15 8 N -0.92 -52.69 13.96 21.45 0.30 -52.39 15 9 Si 0.92 39.71 27.09 68.60 1.86 41.57 15 10 H -0.26 -11.33 7.11 99.48 0.71 -10.63 15 11 H -0.27 -11.62 7.11 99.48 0.71 -10.92 15 12 H -0.24 -9.23 6.69 99.48 0.67 -8.56 15 13 S -0.07 -2.86 20.39 -56.49 -1.15 -4.01 15 14 C 0.01 0.49 7.32 130.55 0.96 1.45 15 15 N -0.50 -17.86 10.61 -200.67 -2.13 -19.98 15 16 C 0.03 0.89 11.34 83.54 0.95 1.83 15 17 C -0.25 -5.93 11.34 66.71 0.76 -5.18 15 18 S 0.12 3.66 19.43 -56.49 -1.10 2.56 15 19 H 0.05 2.02 6.91 -2.38 -0.02 2.00 15 20 H 0.05 1.97 7.15 -2.39 -0.02 1.96 15 21 H 0.06 2.03 8.14 -2.39 -0.02 2.01 15 22 H 0.06 2.00 6.06 -2.39 -0.01 1.98 15 23 H 0.07 2.60 8.14 -2.39 -0.02 2.58 15 24 H 0.28 14.71 8.31 -92.70 -0.77 13.94 15 25 H 0.21 3.77 8.06 -2.91 -0.02 3.75 15 26 H 0.22 3.05 8.06 -2.91 -0.02 3.03 15 Total: -1.00 -60.61 244.66 3.13 -57.49 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: 1.14 Total: 6.71 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: 4.21 Total: -31.94 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -1.83 Total: -72.37 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 1.86 Total: 41.57 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.25 Total: -1.45 kcal Total: -60.61 3.13 -57.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040676808.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.593 kcal (2) G-P(sol) polarization free energy of solvation -60.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds