Wall clock time and date at job start Mon Mar 30 2020 03:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99778 * 2 1 4 4 H 1.48495 * 109.46988 * 270.00270 * 3 2 1 5 5 H 1.48501 * 109.46689 * 30.00139 * 3 2 1 6 6 H 1.48499 * 109.47189 * 149.99917 * 3 2 1 7 7 C 1.37876 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99946 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99789 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.39911 * 120.00428 * 179.97438 * 10 9 7 12 12 C 1.38820 * 120.06399 * 359.72611 * 11 10 9 13 13 C 1.38150 * 119.96255 * 180.25495 * 12 11 10 14 14 C 1.38373 * 120.09843 * 0.02562 * 13 12 11 15 15 Cl 1.73599 * 119.93284 * 180.02562 * 14 13 12 16 16 C 1.38379 * 120.13416 * 359.97438 * 14 13 12 17 17 C 1.38277 * 120.03897 * 359.97438 * 16 14 13 18 18 F 1.35098 * 120.05285 * 179.97438 * 17 16 14 19 19 H 0.96993 * 120.00687 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47210 * 60.00016 * 9 7 2 21 21 H 1.08996 * 109.47493 * 299.99748 * 9 7 2 22 22 H 0.97004 * 119.99774 * 0.02562 * 10 9 7 23 23 H 1.07998 * 120.01712 * 0.25028 * 12 11 10 24 24 H 1.08001 * 119.95665 * 180.02562 * 13 12 11 25 25 H 1.08004 * 119.97863 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 5.3755 -2.8308 -0.0020 12 6 6.2788 -1.7766 -0.0089 13 6 7.6366 -2.0315 -0.0152 14 6 8.0977 -3.3361 -0.0152 15 17 9.8048 -3.6514 -0.0225 16 6 7.2009 -4.3899 -0.0084 17 6 5.8407 -4.1413 -0.0010 18 9 4.9649 -5.1699 0.0052 19 1 -0.4851 0.8399 -0.0004 20 1 3.8752 -0.6802 0.8889 21 1 3.8745 -0.6799 -0.8911 22 1 3.3696 -3.3124 -0.0010 23 1 5.9202 -0.7579 -0.0094 24 1 8.3392 -1.2113 -0.0201 25 1 7.5637 -5.4072 -0.0089 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042221190.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:10 Heat of formation + Delta-G solvation = -33.421818 kcal Electronic energy + Delta-G solvation = -13098.910952 eV Core-core repulsion = 10438.330564 eV Total energy + Delta-G solvation = -2660.580388 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.54066 -39.02189 -36.51755 -35.11442 -32.68017 -30.49191 -29.57139 -26.81735 -23.38247 -22.11721 -21.01657 -18.11270 -17.14876 -16.43125 -16.02058 -15.41087 -14.92287 -14.57760 -13.91616 -13.52890 -13.42026 -13.19810 -12.86590 -12.55425 -12.08467 -11.42225 -11.33496 -10.92796 -10.85133 -10.79417 -10.10428 -9.61539 -9.57967 -8.80898 -8.76804 -6.95543 -6.31529 -4.35179 1.31469 1.48961 2.29660 3.14223 3.21811 3.22218 3.75943 3.98455 4.19973 4.51367 4.88528 5.02001 5.12028 5.41146 5.70239 5.92639 6.11429 6.32993 6.36450 6.44909 6.81359 6.85020 7.21453 7.63300 8.17669 8.33776 8.69289 9.25731 10.80769 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.041964 B = 0.006320 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.085345 B = 4429.359584 C = 5081.292535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.078 3.922 3 Si 0.879 3.121 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.220 3.780 10 N -0.709 5.709 11 C 0.213 3.787 12 C -0.176 4.176 13 C -0.062 4.062 14 C -0.092 4.092 15 Cl -0.084 7.084 16 C -0.092 4.092 17 C 0.011 3.989 18 F -0.140 7.140 19 H 0.269 0.731 20 H 0.023 0.977 21 H 0.019 0.981 22 H 0.404 0.596 23 H 0.140 0.860 24 H 0.133 0.867 25 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.269 -4.343 -0.011 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.127 4.127 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.098 0.902 9 C 0.098 3.902 10 N -0.330 5.330 11 C 0.101 3.899 12 C -0.199 4.199 13 C -0.081 4.081 14 C -0.121 4.121 15 Cl -0.056 7.056 16 C -0.112 4.112 17 C -0.014 4.014 18 F -0.119 7.119 19 H 0.079 0.921 20 H 0.041 0.959 21 H 0.037 0.963 22 H 0.239 0.761 23 H 0.158 0.842 24 H 0.151 0.849 25 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.054 -4.049 -0.007 15.589 hybrid contribution 0.016 0.383 -0.014 0.383 sum 15.069 -3.666 -0.021 15.509 Atomic orbital electron populations 1.69869 1.06256 1.27555 1.48866 1.24820 0.94832 0.99145 0.93863 0.86798 0.80388 0.83314 0.78957 1.19739 1.20717 1.18757 1.21016 0.88319 0.95385 1.53641 0.90211 1.19621 0.96121 0.78443 0.95998 1.45335 1.01312 1.10493 1.75897 1.18180 0.86729 0.91632 0.93408 1.20535 0.91403 0.98637 1.09367 1.20773 0.95204 0.94823 0.97343 1.20078 0.83892 0.93945 1.14176 1.98323 1.13585 1.96121 1.97557 1.20581 0.90305 0.99510 1.00809 1.16848 0.86732 0.82781 1.15049 1.91443 1.68357 1.57183 1.94944 0.92093 0.95896 0.96342 0.76077 0.84239 0.84944 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.96 55.43 0.77 -25.09 15 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 15 3 Si 0.88 19.95 27.47 -169.99 -4.67 15.28 15 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 15 6 H -0.26 -5.63 6.54 56.52 0.37 -5.26 15 7 C -0.55 -14.57 9.83 -34.44 -0.34 -14.91 15 8 H 0.08 2.29 7.84 -52.49 -0.41 1.88 15 9 C 0.22 4.93 3.74 -5.19 -0.02 4.92 15 10 N -0.71 -14.14 5.73 -59.72 -0.34 -14.48 15 11 C 0.21 3.74 6.66 -83.65 -0.56 3.18 15 12 C -0.18 -2.77 9.31 -39.40 -0.37 -3.14 15 13 C -0.06 -0.84 9.82 -39.56 -0.39 -1.23 15 14 C -0.09 -1.24 6.32 -39.48 -0.25 -1.49 15 15 Cl -0.08 -1.01 28.95 -51.86 -1.50 -2.51 15 16 C -0.09 -1.29 9.80 -39.52 -0.39 -1.68 15 17 C 0.01 0.17 7.31 -39.26 -0.29 -0.11 15 18 F -0.14 -2.36 16.64 2.25 0.04 -2.32 15 19 H 0.27 7.29 8.31 -40.82 -0.34 6.95 15 20 H 0.02 0.52 7.02 -51.93 -0.36 0.15 15 21 H 0.02 0.41 7.37 -51.93 -0.38 0.03 15 22 H 0.40 8.03 7.81 -40.82 -0.32 7.71 15 23 H 0.14 2.18 6.74 -52.49 -0.35 1.83 15 24 H 0.13 1.48 8.06 -52.49 -0.42 1.05 15 25 H 0.14 1.65 8.06 -52.48 -0.42 1.23 15 LS Contribution 242.97 15.07 3.66 3.66 Total: -1.00 -27.38 242.97 -6.58 -33.96 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -1.84 Total: 3.95 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -2.69 Total: -12.45 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.43 Total: -39.57 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.67 Total: 15.28 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -27.38 -6.58 -33.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042221190.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.537 kcal (2) G-P(sol) polarization free energy of solvation -27.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds