Wall clock time and date at job start Mon Mar 30 2020 03:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99778 * 2 1 4 4 H 1.48495 * 109.46988 * 270.00270 * 3 2 1 5 5 H 1.48501 * 109.46689 * 30.00139 * 3 2 1 6 6 H 1.48499 * 109.47189 * 149.99917 * 3 2 1 7 7 C 1.37876 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99946 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99789 * 179.97438 * 7 2 1 10 10 N 1.46504 * 109.47156 * 179.97438 * 9 7 2 11 11 C 1.39911 * 120.00428 * 179.97438 * 10 9 7 12 12 C 1.38820 * 120.06399 * 359.72611 * 11 10 9 13 13 C 1.38150 * 119.96255 * 180.25495 * 12 11 10 14 14 C 1.38373 * 120.09843 * 0.02562 * 13 12 11 15 15 Cl 1.73599 * 119.93284 * 180.02562 * 14 13 12 16 16 C 1.38379 * 120.13416 * 359.97438 * 14 13 12 17 17 C 1.38277 * 120.03897 * 359.97438 * 16 14 13 18 18 F 1.35098 * 120.05285 * 179.97438 * 17 16 14 19 19 H 0.96993 * 120.00687 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47210 * 60.00016 * 9 7 2 21 21 H 1.08996 * 109.47493 * 299.99748 * 9 7 2 22 22 H 0.97004 * 119.99774 * 0.02562 * 10 9 7 23 23 H 1.07998 * 120.01712 * 0.25028 * 12 11 10 24 24 H 1.08001 * 119.95665 * 180.02562 * 13 12 11 25 25 H 1.08004 * 119.97863 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 5.3755 -2.8308 -0.0020 12 6 6.2788 -1.7766 -0.0089 13 6 7.6366 -2.0315 -0.0152 14 6 8.0977 -3.3361 -0.0152 15 17 9.8048 -3.6514 -0.0225 16 6 7.2009 -4.3899 -0.0084 17 6 5.8407 -4.1413 -0.0010 18 9 4.9649 -5.1699 0.0052 19 1 -0.4851 0.8399 -0.0004 20 1 3.8752 -0.6802 0.8889 21 1 3.8745 -0.6799 -0.8911 22 1 3.3696 -3.3124 -0.0010 23 1 5.9202 -0.7579 -0.0094 24 1 8.3392 -1.2113 -0.0201 25 1 7.5637 -5.4072 -0.0089 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042221190.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:10 Heat of formation + Delta-G solvation = -49.924065 kcal Electronic energy + Delta-G solvation = -13099.626543 eV Core-core repulsion = 10438.330564 eV Total energy + Delta-G solvation = -2661.295979 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.82482 -40.25336 -37.66956 -36.52568 -34.62278 -31.66253 -31.15231 -28.40496 -24.91244 -23.44111 -22.48952 -19.70045 -18.56661 -17.93726 -17.37143 -16.70143 -16.48519 -16.01243 -15.34601 -15.12410 -14.87903 -14.41512 -14.40333 -14.03695 -13.30150 -12.92725 -12.89127 -12.36489 -12.29250 -11.89388 -11.85231 -11.63642 -11.00112 -10.72388 -9.93225 -8.39394 -8.33488 -6.49117 0.14430 0.28971 1.21284 1.37399 1.38945 1.49610 2.29579 2.53711 2.56602 2.96167 3.28822 3.73800 4.05038 4.22429 4.47506 4.64951 4.73104 5.02508 5.03969 5.13373 5.22619 5.28533 5.61211 5.92300 6.39432 6.52193 6.78611 7.17292 8.76635 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.041964 B = 0.006320 C = 0.005509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.085345 B = 4429.359584 C = 5081.292535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.016 3.984 3 Si 0.952 3.048 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.237 1.237 7 C -0.557 4.557 8 H 0.039 0.961 9 C 0.236 3.764 10 N -0.726 5.726 11 C 0.188 3.812 12 C -0.179 4.179 13 C -0.052 4.052 14 C -0.085 4.085 15 Cl -0.062 7.062 16 C -0.087 4.087 17 C -0.001 4.001 18 F -0.149 7.149 19 H 0.272 0.728 20 H 0.028 0.972 21 H 0.027 0.973 22 H 0.398 0.602 23 H 0.143 0.857 24 H 0.163 0.837 25 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.486 -3.423 -0.012 18.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.183 4.183 3 Si 0.773 3.227 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.160 1.160 7 C -0.594 4.594 8 H 0.057 0.943 9 C 0.112 3.888 10 N -0.350 5.350 11 C 0.079 3.921 12 C -0.202 4.202 13 C -0.072 4.072 14 C -0.114 4.114 15 Cl -0.034 7.034 16 C -0.107 4.107 17 C -0.025 4.025 18 F -0.128 7.128 19 H 0.081 0.919 20 H 0.046 0.954 21 H 0.045 0.955 22 H 0.232 0.768 23 H 0.160 0.840 24 H 0.181 0.819 25 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 18.336 -3.161 -0.008 18.606 hybrid contribution -0.864 -0.049 -0.016 0.866 sum 17.472 -3.210 -0.025 17.764 Atomic orbital electron populations 1.70027 1.08402 1.28825 1.50637 1.25857 0.95686 1.03574 0.93210 0.85655 0.79781 0.77556 0.79680 1.18638 1.20654 1.16034 1.21321 0.90905 0.94041 1.53178 0.94311 1.19288 0.92971 0.80150 0.96345 1.45080 1.02470 1.09111 1.78365 1.18426 0.85722 0.92843 0.95098 1.20693 0.92119 0.98284 1.09145 1.21066 0.94704 0.95792 0.95609 1.20257 0.85033 0.93878 1.12220 1.98342 1.11603 1.96041 1.97364 1.20804 0.89310 1.00912 0.99693 1.17066 0.87530 0.82254 1.15675 1.91420 1.68859 1.57430 1.95094 0.91900 0.95399 0.95538 0.76800 0.83972 0.81936 0.82414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.44 13.96 21.45 0.30 -56.14 15 2 C 0.02 0.89 5.47 84.65 0.46 1.35 15 3 Si 0.95 40.57 27.47 68.60 1.88 42.46 15 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 15 5 H -0.28 -11.87 7.11 99.48 0.71 -11.17 15 6 H -0.24 -9.06 6.54 99.48 0.65 -8.41 15 7 C -0.56 -30.61 9.83 25.60 0.25 -30.36 15 8 H 0.04 2.37 7.84 -2.91 -0.02 2.35 15 9 C 0.24 10.48 3.74 85.63 0.32 10.80 15 10 N -0.73 -29.32 5.73 -342.87 -1.97 -31.28 15 11 C 0.19 6.43 6.66 38.19 0.25 6.68 15 12 C -0.18 -5.22 9.31 22.39 0.21 -5.02 15 13 C -0.05 -1.23 9.82 22.28 0.22 -1.01 15 14 C -0.08 -2.00 6.32 22.34 0.14 -1.86 15 15 Cl -0.06 -1.25 28.95 -2.72 -0.08 -1.33 15 16 C -0.09 -2.24 9.80 22.31 0.22 -2.02 15 17 C 0.00 -0.03 7.31 22.48 0.16 0.14 15 18 F -0.15 -5.01 16.64 44.97 0.75 -4.26 15 19 H 0.27 15.13 8.31 -92.71 -0.77 14.36 15 20 H 0.03 1.22 7.02 -2.39 -0.02 1.20 15 21 H 0.03 1.14 7.37 -2.39 -0.02 1.12 15 22 H 0.40 16.56 7.81 -92.71 -0.72 15.84 15 23 H 0.14 4.06 6.74 -2.91 -0.02 4.04 15 24 H 0.16 2.84 8.06 -2.91 -0.02 2.82 15 25 H 0.16 3.33 8.06 -2.91 -0.02 3.31 15 Total: -1.00 -59.94 242.97 3.57 -56.37 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.45 Total: 15.49 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 2.24 Total: -21.30 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -1.67 Total: -87.43 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.75 Total: -4.26 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 1.88 Total: 42.46 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -59.94 3.57 -56.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042221190.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.442 kcal (2) G-P(sol) polarization free energy of solvation -59.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds