Wall clock time and date at job start Mon Mar 30 2020 03:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46897 * 110.99925 * 2 1 4 4 C 1.53003 * 109.46884 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46864 * 60.00124 * 4 3 2 6 6 O 1.42897 * 109.47271 * 299.99836 * 4 3 2 7 7 C 1.53006 * 109.47080 * 179.97438 * 4 3 2 8 8 N 1.46898 * 109.46950 * 185.00023 * 7 4 3 9 9 C 1.46906 * 110.99719 * 190.00115 * 8 7 4 10 10 C 1.50699 * 109.46949 * 159.86740 * 9 8 7 11 11 H 1.08001 * 120.00102 * 354.19587 * 10 9 8 12 12 C 1.37873 * 119.99916 * 174.19553 * 10 9 8 13 13 N 1.31515 * 119.99895 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99956 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47101 * 90.00126 * 14 12 10 16 16 H 1.48503 * 109.47094 * 209.99994 * 14 12 10 17 17 H 1.48498 * 109.47372 * 330.00088 * 14 12 10 18 18 C 1.46899 * 110.99948 * 66.05091 * 8 7 4 19 19 C 1.53003 * 117.49214 * 262.02881 * 18 8 7 20 20 C 1.53001 * 117.49551 * 193.37369 * 18 8 7 21 21 H 1.09004 * 109.46776 * 300.00495 * 1 2 3 22 22 H 1.09002 * 109.46797 * 59.99896 * 1 2 3 23 23 H 1.08994 * 109.47125 * 180.02562 * 1 2 3 24 24 H 1.00893 * 110.99740 * 236.04699 * 2 1 3 25 25 H 1.08998 * 109.47246 * 300.00010 * 3 2 1 26 26 H 1.08999 * 109.47269 * 60.00239 * 3 2 1 27 27 H 0.96702 * 114.00308 * 300.00513 * 6 4 3 28 28 H 1.08998 * 109.46719 * 305.00197 * 7 4 3 29 29 H 1.09003 * 109.47153 * 65.00154 * 7 4 3 30 30 H 1.09000 * 109.47106 * 279.86441 * 9 8 7 31 31 H 1.08992 * 109.46985 * 39.86564 * 9 8 7 32 32 H 0.97010 * 119.99585 * 179.97438 * 13 12 10 33 33 H 1.08994 * 115.55342 * 47.69524 * 18 8 7 34 34 H 1.08993 * 117.50492 * 359.97438 * 19 18 8 35 35 H 1.09006 * 117.49366 * 145.02629 * 19 18 8 36 36 H 1.09000 * 117.49435 * 214.97648 * 20 18 8 37 37 H 1.08999 * 117.50247 * 359.97114 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5250 1.3305 0.0006 5 1 3.8748 0.8071 -0.8891 6 8 3.9827 0.6447 1.1677 7 6 4.0733 2.7590 0.0000 8 7 5.5369 2.7215 -0.1201 9 6 6.1184 4.0504 0.1126 10 6 7.5748 3.9056 0.4716 11 1 8.0008 2.9234 0.6138 12 6 8.3634 5.0269 0.6185 13 7 7.8444 6.2230 0.4458 14 14 10.1685 4.8474 1.0643 15 1 10.9771 4.7457 -0.1771 16 1 10.6060 6.0330 1.8443 17 1 10.3574 3.6210 1.8799 18 6 5.9444 2.1902 -1.4276 19 6 6.3310 0.7116 -1.4999 20 6 7.4112 1.7914 -1.6021 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8306 -0.5261 -0.7813 25 1 1.6460 1.8948 -0.8900 26 1 1.6460 1.8948 0.8900 27 1 3.7079 1.0557 1.9987 28 1 3.6535 3.3088 -0.8423 29 1 3.7977 3.2544 0.9310 30 1 6.0252 4.6512 -0.7921 31 1 5.5896 4.5402 0.9301 32 1 8.3992 7.0120 0.5496 33 1 5.4336 2.6195 -2.2895 34 1 6.2835 0.1333 -0.5773 35 1 6.0750 0.1684 -2.4096 36 1 7.8652 1.9582 -2.5789 37 1 8.0739 1.9237 -0.7469 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042531017.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:22 Heat of formation + Delta-G solvation = -15.436887 kcal Electronic energy + Delta-G solvation = -16469.503025 eV Core-core repulsion = 13861.838513 eV Total energy + Delta-G solvation = -2607.664511 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.45610 -36.80653 -34.91422 -33.46655 -32.31513 -29.78452 -27.21973 -25.21177 -23.00524 -22.26237 -21.58069 -21.15047 -19.40293 -16.78310 -16.38352 -15.69258 -15.06720 -14.78167 -14.57616 -14.42076 -14.23952 -13.64030 -13.31874 -12.62890 -12.30935 -12.08185 -11.87375 -11.79823 -11.34945 -11.23144 -10.85279 -10.72879 -10.59452 -10.54320 -9.97809 -9.56052 -9.46490 -9.10769 -9.00023 -8.49740 -8.36881 -7.21969 -5.98155 -3.97628 3.34419 3.40712 3.45309 4.05621 4.45382 4.63592 4.74841 4.89732 5.07680 5.22258 5.28801 5.37150 5.42980 5.62455 5.63421 5.71470 5.71852 5.74765 5.83279 6.07054 6.20778 6.26454 6.40516 6.50122 6.81657 6.86445 7.09624 7.22186 7.25753 7.39635 7.89602 8.11749 8.18615 8.27286 8.58424 9.09260 9.65133 11.12557 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.041041 B = 0.006097 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.074532 B = 4591.541672 C = 4876.817939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.684 5.684 3 C 0.023 3.977 4 C 0.118 3.882 5 H 0.096 0.904 6 O -0.536 6.536 7 C 0.029 3.971 8 N -0.498 5.498 9 C 0.195 3.805 10 C -0.494 4.494 11 H 0.068 0.932 12 C 0.053 3.947 13 N -0.903 5.903 14 Si 0.894 3.106 15 H -0.282 1.282 16 H -0.288 1.288 17 H -0.272 1.272 18 C 0.022 3.978 19 C -0.183 4.183 20 C -0.155 4.155 21 H 0.063 0.937 22 H 0.017 0.983 23 H 0.065 0.935 24 H 0.341 0.659 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.367 0.633 28 H 0.026 0.974 29 H 0.071 0.929 30 H -0.004 1.004 31 H 0.023 0.977 32 H 0.260 0.740 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.879 -9.232 -2.974 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.314 5.314 3 C -0.107 4.107 4 C 0.057 3.943 5 H 0.113 0.887 6 O -0.339 6.339 7 C -0.101 4.101 8 N -0.222 5.222 9 C 0.070 3.930 10 C -0.533 4.533 11 H 0.086 0.914 12 C -0.148 4.148 13 N -0.543 5.543 14 Si 0.722 3.278 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.197 1.197 18 C -0.087 4.087 19 C -0.221 4.221 20 C -0.193 4.193 21 H 0.081 0.919 22 H 0.036 0.964 23 H 0.084 0.916 24 H 0.159 0.841 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.213 0.787 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.014 0.986 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.340 -9.804 -2.357 14.442 hybrid contribution 0.075 1.503 -1.046 1.832 sum -10.265 -8.301 -3.402 13.633 Atomic orbital electron populations 1.22206 0.88283 1.01619 1.00148 1.60287 1.06978 1.14013 1.50165 1.22789 0.97221 0.89731 1.00939 1.21860 0.89300 0.92898 0.90196 0.88652 1.86582 1.78144 1.54203 1.14952 1.22707 0.90988 0.95744 1.00626 1.61846 1.05127 1.28637 1.26639 1.19730 0.95166 0.82605 0.95475 1.21226 0.93741 0.92790 1.45548 0.91377 1.24981 0.98631 0.95255 0.95901 1.69963 1.36045 0.97526 1.50759 0.86554 0.85182 0.77618 0.78446 1.20775 1.21392 1.19724 1.22056 0.99194 0.96162 0.91300 1.23079 1.05361 0.91763 1.01894 1.23105 0.92209 1.01061 1.02877 0.91861 0.96406 0.91571 0.84120 0.94827 0.90802 0.78717 0.95617 0.91043 0.98597 0.95937 0.93085 0.91793 0.88270 0.90566 0.90357 0.86480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.70 60.07 0.64 0.90 16 2 N -0.68 -7.89 6.72 -121.13 -0.81 -8.70 16 3 C 0.02 0.28 5.35 -3.82 -0.02 0.26 16 4 C 0.12 1.74 3.05 -26.73 -0.08 1.66 16 5 H 0.10 1.47 6.29 -51.93 -0.33 1.15 16 6 O -0.54 -8.68 13.15 -35.23 -0.46 -9.14 16 7 C 0.03 0.51 4.58 -3.82 -0.02 0.49 16 8 N -0.50 -10.66 4.52 -228.08 -1.03 -11.69 16 9 C 0.19 5.05 4.77 -4.97 -0.02 5.02 16 10 C -0.49 -13.72 7.82 -34.44 -0.27 -13.98 16 11 H 0.07 1.88 5.78 -52.49 -0.30 1.58 16 12 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 13 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 14 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 C 0.02 0.44 4.18 -67.71 -0.28 0.16 16 19 C -0.18 -3.17 9.16 -26.69 -0.24 -3.41 16 20 C -0.16 -3.06 9.48 -26.69 -0.25 -3.31 16 21 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.34 3.70 8.81 -39.30 -0.35 3.36 16 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.37 5.04 9.05 45.56 0.41 5.45 16 28 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.07 1.23 7.83 -51.93 -0.41 0.83 16 30 H 0.00 -0.11 7.99 -51.93 -0.42 -0.52 16 31 H 0.02 0.62 7.73 -51.93 -0.40 0.22 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.12 2.60 5.45 -51.93 -0.28 2.32 16 LS Contribution 301.70 15.07 4.55 4.55 Total: -1.00 -30.41 301.70 -8.12 -38.54 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.43 Total: 6.69 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.65 Total: -10.83 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -1.11 Total: -46.48 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.46 Total: -9.14 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.41 -8.12 -38.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531017.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.102 kcal (2) G-P(sol) polarization free energy of solvation -30.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds