Wall clock time and date at job start Mon Mar 30 2020 03:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46897 * 110.99925 * 2 1 4 4 C 1.53003 * 109.46884 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46864 * 60.00124 * 4 3 2 6 6 O 1.42897 * 109.47271 * 299.99836 * 4 3 2 7 7 C 1.53006 * 109.47080 * 179.97438 * 4 3 2 8 8 N 1.46898 * 109.46950 * 185.00023 * 7 4 3 9 9 C 1.46906 * 110.99719 * 190.00115 * 8 7 4 10 10 C 1.50699 * 109.46949 * 159.86740 * 9 8 7 11 11 H 1.08001 * 120.00102 * 354.19587 * 10 9 8 12 12 C 1.37873 * 119.99916 * 174.19553 * 10 9 8 13 13 N 1.31515 * 119.99895 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99956 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47101 * 90.00126 * 14 12 10 16 16 H 1.48503 * 109.47094 * 209.99994 * 14 12 10 17 17 H 1.48498 * 109.47372 * 330.00088 * 14 12 10 18 18 C 1.46899 * 110.99948 * 66.05091 * 8 7 4 19 19 C 1.53003 * 117.49214 * 262.02881 * 18 8 7 20 20 C 1.53001 * 117.49551 * 193.37369 * 18 8 7 21 21 H 1.09004 * 109.46776 * 300.00495 * 1 2 3 22 22 H 1.09002 * 109.46797 * 59.99896 * 1 2 3 23 23 H 1.08994 * 109.47125 * 180.02562 * 1 2 3 24 24 H 1.00893 * 110.99740 * 236.04699 * 2 1 3 25 25 H 1.08998 * 109.47246 * 300.00010 * 3 2 1 26 26 H 1.08999 * 109.47269 * 60.00239 * 3 2 1 27 27 H 0.96702 * 114.00308 * 300.00513 * 6 4 3 28 28 H 1.08998 * 109.46719 * 305.00197 * 7 4 3 29 29 H 1.09003 * 109.47153 * 65.00154 * 7 4 3 30 30 H 1.09000 * 109.47106 * 279.86441 * 9 8 7 31 31 H 1.08992 * 109.46985 * 39.86564 * 9 8 7 32 32 H 0.97010 * 119.99585 * 179.97438 * 13 12 10 33 33 H 1.08994 * 115.55342 * 47.69524 * 18 8 7 34 34 H 1.08993 * 117.50492 * 359.97438 * 19 18 8 35 35 H 1.09006 * 117.49366 * 145.02629 * 19 18 8 36 36 H 1.09000 * 117.49435 * 214.97648 * 20 18 8 37 37 H 1.08999 * 117.50247 * 359.97114 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5250 1.3305 0.0006 5 1 3.8748 0.8071 -0.8891 6 8 3.9827 0.6447 1.1677 7 6 4.0733 2.7590 0.0000 8 7 5.5369 2.7215 -0.1201 9 6 6.1184 4.0504 0.1126 10 6 7.5748 3.9056 0.4716 11 1 8.0008 2.9234 0.6138 12 6 8.3634 5.0269 0.6185 13 7 7.8444 6.2230 0.4458 14 14 10.1685 4.8474 1.0643 15 1 10.9771 4.7457 -0.1771 16 1 10.6060 6.0330 1.8443 17 1 10.3574 3.6210 1.8799 18 6 5.9444 2.1902 -1.4276 19 6 6.3310 0.7116 -1.4999 20 6 7.4112 1.7914 -1.6021 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 1.8306 -0.5261 -0.7813 25 1 1.6460 1.8948 -0.8900 26 1 1.6460 1.8948 0.8900 27 1 3.7079 1.0557 1.9987 28 1 3.6535 3.3088 -0.8423 29 1 3.7977 3.2544 0.9310 30 1 6.0252 4.6512 -0.7921 31 1 5.5896 4.5402 0.9301 32 1 8.3992 7.0120 0.5496 33 1 5.4336 2.6195 -2.2895 34 1 6.2835 0.1333 -0.5773 35 1 6.0750 0.1684 -2.4096 36 1 7.8652 1.9582 -2.5789 37 1 8.0739 1.9237 -0.7469 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042531017.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:22 Heat of formation + Delta-G solvation = -40.210679 kcal Electronic energy + Delta-G solvation = -16470.577297 eV Core-core repulsion = 13861.838513 eV Total energy + Delta-G solvation = -2608.738784 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.87142 -38.12500 -35.93993 -35.28861 -34.19811 -31.16370 -28.89874 -26.54968 -24.29940 -23.94537 -23.07048 -22.43861 -21.02501 -18.65368 -17.63219 -16.98516 -16.74676 -16.32120 -16.03282 -15.74067 -15.40857 -14.95863 -14.66028 -14.32848 -13.82510 -13.61794 -13.20539 -12.97718 -12.81843 -12.66682 -12.62060 -12.47563 -12.31672 -11.82552 -11.79421 -11.25288 -11.03775 -10.79832 -10.55734 -10.51142 -9.35518 -8.95633 -8.15060 -6.22300 1.41972 1.42664 1.54194 2.42354 2.94913 3.12256 3.17639 3.41560 3.75766 3.92991 4.18013 4.19921 4.28010 4.36923 4.42936 4.52753 4.62278 4.65292 4.69598 4.76272 4.86861 4.93622 5.03859 5.12184 5.19030 5.25798 5.39141 5.51867 5.78271 6.00402 6.12611 6.42427 6.44525 6.66928 6.92601 7.06911 7.45547 8.95482 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.041041 B = 0.006097 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.074532 B = 4591.541672 C = 4876.817939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.695 5.695 3 C 0.034 3.966 4 C 0.132 3.868 5 H 0.093 0.907 6 O -0.552 6.552 7 C 0.027 3.973 8 N -0.506 5.506 9 C 0.210 3.790 10 C -0.502 4.502 11 H 0.067 0.933 12 C 0.001 3.999 13 N -0.939 5.939 14 Si 0.961 3.039 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.266 1.266 18 C 0.002 3.998 19 C -0.143 4.143 20 C -0.172 4.172 21 H 0.063 0.937 22 H 0.025 0.975 23 H 0.078 0.922 24 H 0.345 0.655 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.376 0.624 28 H 0.029 0.971 29 H 0.067 0.933 30 H -0.036 1.036 31 H -0.001 1.001 32 H 0.261 0.739 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.187 -10.844 -3.442 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.327 5.327 3 C -0.096 4.096 4 C 0.072 3.928 5 H 0.111 0.889 6 O -0.357 6.357 7 C -0.102 4.102 8 N -0.230 5.230 9 C 0.084 3.916 10 C -0.541 4.541 11 H 0.085 0.915 12 C -0.196 4.196 13 N -0.581 5.581 14 Si 0.786 3.214 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.190 1.190 18 C -0.107 4.107 19 C -0.181 4.181 20 C -0.209 4.209 21 H 0.081 0.919 22 H 0.043 0.957 23 H 0.097 0.903 24 H 0.163 0.837 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.224 0.776 28 H 0.047 0.953 29 H 0.086 0.914 30 H -0.018 1.018 31 H 0.017 0.983 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.112 0.888 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.668 -11.441 -2.824 15.896 hybrid contribution 0.108 1.978 -0.906 2.179 sum -10.560 -9.463 -3.731 14.662 Atomic orbital electron populations 1.22247 0.86812 1.02610 1.00491 1.60270 1.08399 1.13370 1.50610 1.22593 0.94990 0.90548 1.01496 1.21697 0.91001 0.90434 0.89701 0.88901 1.86543 1.78704 1.54649 1.15809 1.22821 0.88736 0.98076 1.00548 1.61771 1.07480 1.25594 1.28127 1.19378 0.94733 0.84491 0.92996 1.21500 0.94734 0.92757 1.45091 0.91532 1.25830 1.03163 0.94867 0.95789 1.70090 1.37758 0.98309 1.51896 0.85498 0.79747 0.77710 0.78405 1.19907 1.21027 1.19029 1.22196 0.99478 0.98406 0.90630 1.23037 1.01966 0.90087 1.02986 1.23066 0.92013 1.03286 1.02562 0.91854 0.95670 0.90312 0.83688 0.94060 0.90496 0.77640 0.95252 0.91440 1.01810 0.98324 0.92975 0.91195 0.89256 0.86914 0.88758 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.70 127.69 1.37 1.81 16 2 N -0.70 -14.44 6.72 -537.13 -3.61 -18.05 16 3 C 0.03 0.76 5.35 86.30 0.46 1.22 16 4 C 0.13 3.71 3.05 30.60 0.09 3.80 16 5 H 0.09 2.67 6.29 -2.39 -0.02 2.66 16 6 O -0.55 -17.19 13.15 -148.98 -1.96 -19.15 16 7 C 0.03 0.95 4.58 86.31 0.40 1.34 16 8 N -0.51 -21.81 4.52 -875.51 -3.95 -25.76 16 9 C 0.21 11.23 4.77 85.56 0.41 11.64 16 10 C -0.50 -28.41 7.82 25.60 0.20 -28.21 16 11 H 0.07 3.73 5.78 -2.91 -0.02 3.72 16 12 C 0.00 0.03 5.46 84.65 0.46 0.49 16 13 N -0.94 -56.94 13.29 21.45 0.28 -56.66 16 14 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 18 C 0.00 0.07 4.18 44.92 0.19 0.26 16 19 C -0.14 -4.62 9.16 30.62 0.28 -4.34 16 20 C -0.17 -6.62 9.48 30.62 0.29 -6.33 16 21 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 22 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 23 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.35 6.65 8.81 -89.70 -0.79 5.86 16 25 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.38 9.97 9.05 -74.06 -0.67 9.30 16 28 H 0.03 1.00 8.12 -2.39 -0.02 0.98 16 29 H 0.07 2.36 7.83 -2.39 -0.02 2.34 16 30 H -0.04 -2.11 7.99 -2.39 -0.02 -2.13 16 31 H 0.00 -0.07 7.73 -2.39 -0.02 -0.09 16 32 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 33 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.09 3.11 8.14 -2.39 -0.02 3.10 16 35 H 0.11 2.86 8.14 -2.38 -0.02 2.84 16 36 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.09 3.93 5.45 -2.39 -0.01 3.92 16 Total: -1.00 -65.39 301.70 -3.47 -68.86 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -0.41 Total: 22.22 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 4.14 Total: -18.31 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -7.28 Total: -100.47 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -1.96 Total: -19.15 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -65.39 -3.47 -68.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531017.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.653 kcal (2) G-P(sol) polarization free energy of solvation -65.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds