Wall clock time and date at job start Mon Mar 30 2020 03:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99493 * 2 1 4 4 C 1.53005 * 109.46808 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46965 * 304.99473 * 4 3 2 6 6 O 1.42896 * 109.47335 * 64.99334 * 4 3 2 7 7 C 1.52995 * 109.47243 * 185.00037 * 4 3 2 8 8 N 1.46900 * 109.47616 * 179.97438 * 7 4 3 9 9 C 1.46895 * 111.00470 * 169.99737 * 8 7 4 10 10 C 1.50702 * 109.47104 * 285.62711 * 9 8 7 11 11 H 1.07998 * 119.99924 * 4.83852 * 10 9 8 12 12 C 1.37882 * 120.00124 * 184.84820 * 10 9 8 13 13 N 1.31510 * 119.99629 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00021 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47244 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47336 * 120.00161 * 14 12 10 17 17 H 1.48503 * 109.47004 * 239.99986 * 14 12 10 18 18 C 1.46900 * 110.99872 * 293.95398 * 8 7 4 19 19 C 1.52997 * 117.49950 * 246.43689 * 18 8 7 20 20 C 1.52997 * 117.49764 * 177.81468 * 18 8 7 21 21 H 1.08999 * 109.47356 * 299.99787 * 1 2 3 22 22 H 1.08998 * 109.47402 * 60.00810 * 1 2 3 23 23 H 1.09011 * 109.46561 * 180.02562 * 1 2 3 24 24 H 1.00901 * 111.00127 * 236.03968 * 2 1 3 25 25 H 1.09004 * 109.47114 * 299.99148 * 3 2 1 26 26 H 1.08994 * 109.47303 * 60.00154 * 3 2 1 27 27 H 0.96702 * 113.99445 * 60.00887 * 6 4 3 28 28 H 1.09001 * 109.46967 * 300.00063 * 7 4 3 29 29 H 1.09008 * 109.47240 * 59.99554 * 7 4 3 30 30 H 1.09006 * 109.46793 * 45.62355 * 9 8 7 31 31 H 1.08992 * 109.47420 * 165.62517 * 9 8 7 32 32 H 0.97003 * 119.99920 * 179.97438 * 13 12 10 33 33 H 1.09005 * 115.54889 * 32.13985 * 18 8 7 34 34 H 1.09001 * 117.49397 * 359.97438 * 19 18 8 35 35 H 1.08992 * 117.50363 * 145.01814 * 19 18 8 36 36 H 1.09001 * 117.49861 * 214.97880 * 20 18 8 37 37 H 1.08997 * 117.50036 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 3.5249 1.3307 -0.0006 5 1 3.8727 0.7317 0.8410 6 8 3.9854 0.7489 -1.2219 7 6 4.0730 2.7535 0.1251 8 7 5.5415 2.7144 0.1251 9 6 6.1042 4.0661 0.0055 10 6 5.9399 4.5551 -1.4104 11 1 5.3964 3.9586 -2.1281 12 6 6.4838 5.7641 -1.7898 13 7 7.1454 6.4905 -0.9157 14 14 6.2808 6.3699 -3.5450 15 1 5.5020 5.3749 -4.3251 16 1 5.5612 7.6688 -3.5402 17 1 7.6183 6.5473 -4.1652 18 6 6.0501 2.0367 1.3251 19 6 6.8324 2.8795 2.3343 20 6 7.5653 1.8671 1.4519 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 1.8306 -0.5262 -0.7813 25 1 1.6459 1.8948 -0.8901 26 1 1.6459 1.8948 0.8899 27 1 3.7125 1.2309 -2.0145 28 1 3.7252 3.3526 -0.7165 29 1 3.7217 3.1973 1.0567 30 1 5.5812 4.7388 0.6853 31 1 7.1635 4.0426 0.2612 32 1 7.5284 7.3409 -1.1826 33 1 5.4196 1.2385 1.7170 34 1 6.9701 3.9367 2.1076 35 1 6.7168 2.6360 3.3904 36 1 7.9318 0.9573 1.9275 37 1 8.1848 2.2579 0.6447 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042531018.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:24 Heat of formation + Delta-G solvation = -17.070206 kcal Electronic energy + Delta-G solvation = -16463.078691 eV Core-core repulsion = 13855.343354 eV Total energy + Delta-G solvation = -2607.735337 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.63298 -37.14511 -34.89931 -33.41002 -32.21547 -29.69633 -27.14740 -25.34215 -23.09997 -22.58060 -21.64775 -21.29623 -18.85530 -16.88464 -16.47720 -15.77747 -15.34007 -14.92988 -14.71570 -14.30346 -14.17424 -13.50136 -13.04880 -12.76211 -12.29254 -12.13563 -11.95609 -11.71843 -11.34642 -11.20901 -10.92030 -10.72042 -10.68586 -10.37616 -10.13323 -9.87393 -9.70117 -9.33380 -9.11621 -8.50768 -8.43421 -7.05161 -6.04117 -4.05285 3.28997 3.36779 3.40659 4.09921 4.39654 4.49782 4.75435 4.97361 5.14655 5.19559 5.31672 5.33781 5.40229 5.58828 5.59172 5.66221 5.73353 5.74917 5.80858 5.95119 6.23484 6.26937 6.31961 6.56748 6.66201 6.84107 6.91292 7.26167 7.29871 7.33754 7.79461 8.04473 8.14251 8.22349 8.53934 9.02088 9.58637 11.06493 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.021059 B = 0.007797 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.251354 B = 3590.207877 C = 4564.153621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.692 5.692 3 C 0.025 3.975 4 C 0.113 3.887 5 H 0.099 0.901 6 O -0.547 6.547 7 C 0.035 3.965 8 N -0.492 5.492 9 C 0.188 3.812 10 C -0.504 4.504 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.897 3.103 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.284 1.284 18 C 0.027 3.973 19 C -0.229 4.229 20 C -0.173 4.173 21 H 0.062 0.938 22 H 0.019 0.981 23 H 0.065 0.935 24 H 0.348 0.652 25 H 0.033 0.967 26 H 0.077 0.923 27 H 0.369 0.631 28 H 0.084 0.916 29 H 0.030 0.970 30 H -0.010 1.010 31 H 0.041 0.959 32 H 0.260 0.740 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.054 -9.276 2.789 13.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.323 5.323 3 C -0.105 4.105 4 C 0.053 3.947 5 H 0.117 0.883 6 O -0.351 6.351 7 C -0.095 4.095 8 N -0.213 5.213 9 C 0.063 3.937 10 C -0.543 4.543 11 H 0.080 0.920 12 C -0.147 4.147 13 N -0.538 5.538 14 Si 0.725 3.275 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.210 1.210 18 C -0.083 4.083 19 C -0.268 4.268 20 C -0.211 4.211 21 H 0.081 0.919 22 H 0.038 0.962 23 H 0.084 0.916 24 H 0.166 0.834 25 H 0.052 0.948 26 H 0.096 0.904 27 H 0.215 0.785 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.008 0.992 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.513 -9.869 3.463 13.486 hybrid contribution -0.720 1.730 -1.381 2.328 sum -9.233 -8.139 2.082 12.483 Atomic orbital electron populations 1.22194 0.88276 1.01574 1.00230 1.60343 1.07170 1.14197 1.50637 1.22733 0.96855 0.89714 1.01175 1.22010 0.89820 0.94575 0.88310 0.88326 1.86565 1.78919 1.54456 1.15164 1.22613 0.90098 0.95590 1.01155 1.61900 1.04605 1.22170 1.32633 1.19881 0.95528 0.81548 0.96732 1.21190 1.34121 1.03196 0.95748 0.91968 1.24984 0.95350 0.96783 0.97536 1.69962 1.36398 1.13316 1.34156 0.86457 0.77871 0.78477 0.84690 1.19717 1.21203 1.21001 1.22626 0.93730 0.99682 0.92291 1.23596 1.07985 0.99135 0.96071 1.22952 0.95632 1.00030 1.02495 0.91918 0.96219 0.91621 0.83389 0.94838 0.90425 0.78472 0.89785 0.95217 0.99228 0.94147 0.92987 0.87845 0.87610 0.90178 0.89665 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.70 60.07 0.64 0.91 16 2 N -0.69 -8.30 6.86 -121.12 -0.83 -9.13 16 3 C 0.03 0.32 5.36 -3.82 -0.02 0.30 16 4 C 0.11 1.72 3.14 -26.73 -0.08 1.63 16 5 H 0.10 1.57 6.40 -51.93 -0.33 1.24 16 6 O -0.55 -8.82 12.72 -35.23 -0.45 -9.27 16 7 C 0.03 0.64 4.45 -3.83 -0.02 0.62 16 8 N -0.49 -10.53 4.52 -228.09 -1.03 -11.56 16 9 C 0.19 4.81 3.38 -4.98 -0.02 4.80 16 10 C -0.50 -13.94 8.58 -34.44 -0.30 -14.24 16 11 H 0.06 1.70 7.57 -52.49 -0.40 1.30 16 12 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 13 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 14 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 15 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 18 C 0.03 0.51 5.83 -67.72 -0.39 0.11 16 19 C -0.23 -4.20 9.56 -26.73 -0.26 -4.46 16 20 C -0.17 -3.16 9.91 -26.73 -0.27 -3.42 16 21 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 23 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 24 H 0.35 4.09 8.37 -39.29 -0.33 3.76 16 25 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.37 5.12 9.05 45.56 0.41 5.54 16 28 H 0.08 1.64 7.21 -51.93 -0.37 1.26 16 29 H 0.03 0.54 8.12 -51.92 -0.42 0.11 16 30 H -0.01 -0.27 7.82 -51.93 -0.41 -0.68 16 31 H 0.04 1.12 5.63 -51.93 -0.29 0.82 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.10 1.76 6.34 -51.93 -0.33 1.43 16 34 H 0.11 2.24 6.02 -51.93 -0.31 1.93 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.10 1.99 7.48 -51.93 -0.39 1.60 16 LS Contribution 299.93 15.07 4.52 4.52 Total: -1.00 -30.06 299.93 -8.14 -38.20 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.27 Total: 8.87 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -0.80 Total: -12.31 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -1.12 Total: -46.45 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.45 Total: -9.27 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.06 -8.14 -38.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531018.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.132 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds