Wall clock time and date at job start Mon Mar 30 2020 03:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99493 * 2 1 4 4 C 1.53005 * 109.46808 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.46965 * 304.99473 * 4 3 2 6 6 O 1.42896 * 109.47335 * 64.99334 * 4 3 2 7 7 C 1.52995 * 109.47243 * 185.00037 * 4 3 2 8 8 N 1.46900 * 109.47616 * 179.97438 * 7 4 3 9 9 C 1.46895 * 111.00470 * 169.99737 * 8 7 4 10 10 C 1.50702 * 109.47104 * 285.62711 * 9 8 7 11 11 H 1.07998 * 119.99924 * 4.83852 * 10 9 8 12 12 C 1.37882 * 120.00124 * 184.84820 * 10 9 8 13 13 N 1.31510 * 119.99629 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00021 * 179.97438 * 12 10 9 15 15 H 1.48494 * 109.47244 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47336 * 120.00161 * 14 12 10 17 17 H 1.48503 * 109.47004 * 239.99986 * 14 12 10 18 18 C 1.46900 * 110.99872 * 293.95398 * 8 7 4 19 19 C 1.52997 * 117.49950 * 246.43689 * 18 8 7 20 20 C 1.52997 * 117.49764 * 177.81468 * 18 8 7 21 21 H 1.08999 * 109.47356 * 299.99787 * 1 2 3 22 22 H 1.08998 * 109.47402 * 60.00810 * 1 2 3 23 23 H 1.09011 * 109.46561 * 180.02562 * 1 2 3 24 24 H 1.00901 * 111.00127 * 236.03968 * 2 1 3 25 25 H 1.09004 * 109.47114 * 299.99148 * 3 2 1 26 26 H 1.08994 * 109.47303 * 60.00154 * 3 2 1 27 27 H 0.96702 * 113.99445 * 60.00887 * 6 4 3 28 28 H 1.09001 * 109.46967 * 300.00063 * 7 4 3 29 29 H 1.09008 * 109.47240 * 59.99554 * 7 4 3 30 30 H 1.09006 * 109.46793 * 45.62355 * 9 8 7 31 31 H 1.08992 * 109.47420 * 165.62517 * 9 8 7 32 32 H 0.97003 * 119.99920 * 179.97438 * 13 12 10 33 33 H 1.09005 * 115.54889 * 32.13985 * 18 8 7 34 34 H 1.09001 * 117.49397 * 359.97438 * 19 18 8 35 35 H 1.08992 * 117.50363 * 145.01814 * 19 18 8 36 36 H 1.09001 * 117.49861 * 214.97880 * 20 18 8 37 37 H 1.08997 * 117.50036 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 3.5249 1.3307 -0.0006 5 1 3.8727 0.7317 0.8410 6 8 3.9854 0.7489 -1.2219 7 6 4.0730 2.7535 0.1251 8 7 5.5415 2.7144 0.1251 9 6 6.1042 4.0661 0.0055 10 6 5.9399 4.5551 -1.4104 11 1 5.3964 3.9586 -2.1281 12 6 6.4838 5.7641 -1.7898 13 7 7.1454 6.4905 -0.9157 14 14 6.2808 6.3699 -3.5450 15 1 5.5020 5.3749 -4.3251 16 1 5.5612 7.6688 -3.5402 17 1 7.6183 6.5473 -4.1652 18 6 6.0501 2.0367 1.3251 19 6 6.8324 2.8795 2.3343 20 6 7.5653 1.8671 1.4519 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0278 0.0005 24 1 1.8306 -0.5262 -0.7813 25 1 1.6459 1.8948 -0.8901 26 1 1.6459 1.8948 0.8899 27 1 3.7125 1.2309 -2.0145 28 1 3.7252 3.3526 -0.7165 29 1 3.7217 3.1973 1.0567 30 1 5.5812 4.7388 0.6853 31 1 7.1635 4.0426 0.2612 32 1 7.5284 7.3409 -1.1826 33 1 5.4196 1.2385 1.7170 34 1 6.9701 3.9367 2.1076 35 1 6.7168 2.6360 3.3904 36 1 7.9318 0.9573 1.9275 37 1 8.1848 2.2579 0.6447 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042531018.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:24 Heat of formation + Delta-G solvation = -41.546878 kcal Electronic energy + Delta-G solvation = -16464.140079 eV Core-core repulsion = 13855.343354 eV Total energy + Delta-G solvation = -2608.796725 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.11589 -38.44615 -35.93899 -35.27886 -34.03337 -31.09943 -28.87528 -26.70321 -24.67269 -23.99312 -23.14721 -22.58385 -20.48600 -18.76173 -17.76448 -17.17953 -16.75263 -16.65647 -16.10511 -15.89542 -15.22693 -14.70583 -14.43781 -14.40421 -13.95168 -13.63784 -13.21358 -12.99847 -12.85360 -12.67823 -12.59843 -12.48479 -12.32963 -11.98687 -11.74720 -11.58904 -11.14693 -11.08432 -10.75372 -10.56246 -9.41251 -8.77116 -8.19609 -6.29774 1.39593 1.41190 1.53876 2.39283 2.84536 3.10398 3.15130 3.45083 3.70608 3.95205 4.01119 4.12906 4.23245 4.24664 4.32925 4.52113 4.54758 4.68504 4.72349 4.78668 4.82423 4.86076 5.03130 5.08245 5.16394 5.25858 5.31416 5.32817 5.65852 5.99507 6.07953 6.39389 6.44637 6.63887 6.85938 6.95460 7.39648 8.90888 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.021059 B = 0.007797 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.251354 B = 3590.207877 C = 4564.153621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.700 5.700 3 C 0.035 3.965 4 C 0.129 3.871 5 H 0.097 0.903 6 O -0.559 6.559 7 C 0.037 3.963 8 N -0.503 5.503 9 C 0.208 3.792 10 C -0.519 4.519 11 H 0.063 0.937 12 C 0.001 3.999 13 N -0.936 5.936 14 Si 0.968 3.032 15 H -0.261 1.261 16 H -0.279 1.279 17 H -0.281 1.281 18 C 0.017 3.983 19 C -0.225 4.225 20 C -0.169 4.169 21 H 0.064 0.936 22 H 0.024 0.976 23 H 0.079 0.921 24 H 0.349 0.651 25 H 0.037 0.963 26 H 0.081 0.919 27 H 0.378 0.622 28 H 0.067 0.933 29 H 0.031 0.969 30 H -0.040 1.040 31 H 0.012 0.988 32 H 0.263 0.737 33 H 0.132 0.868 34 H 0.068 0.932 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.269 -10.626 2.426 14.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.332 5.332 3 C -0.095 4.095 4 C 0.069 3.931 5 H 0.115 0.885 6 O -0.365 6.365 7 C -0.092 4.092 8 N -0.224 5.224 9 C 0.082 3.918 10 C -0.557 4.557 11 H 0.081 0.919 12 C -0.197 4.197 13 N -0.576 5.576 14 Si 0.793 3.207 15 H -0.185 1.185 16 H -0.205 1.205 17 H -0.207 1.207 18 C -0.092 4.092 19 C -0.264 4.264 20 C -0.206 4.206 21 H 0.083 0.917 22 H 0.043 0.957 23 H 0.098 0.902 24 H 0.167 0.833 25 H 0.056 0.944 26 H 0.100 0.900 27 H 0.226 0.774 28 H 0.086 0.914 29 H 0.049 0.951 30 H -0.022 1.022 31 H 0.030 0.970 32 H 0.072 0.928 33 H 0.150 0.850 34 H 0.087 0.913 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.747 -11.239 3.100 15.196 hybrid contribution -0.343 2.124 -1.223 2.475 sum -10.090 -9.114 1.877 13.726 Atomic orbital electron populations 1.22254 0.86773 1.02676 1.00566 1.60338 1.08594 1.13386 1.50842 1.22556 0.94793 0.90564 1.01606 1.21821 0.91385 0.91893 0.88043 0.88484 1.86533 1.79363 1.54768 1.15798 1.22657 0.88233 0.97837 1.00502 1.61809 1.06495 1.19452 1.34662 1.19453 0.93705 0.83406 0.95208 1.21517 1.34041 1.03544 0.96634 0.91889 1.25901 0.94869 0.96937 1.02005 1.70095 1.37328 1.13793 1.36413 0.85348 0.77947 0.78138 0.79267 1.18490 1.20486 1.20715 1.22851 0.94521 1.00219 0.91640 1.23505 1.07946 0.97081 0.97853 1.22992 0.94830 1.01127 1.01691 0.91675 0.95741 0.90198 0.83271 0.94434 0.90025 0.77435 0.91413 0.95089 1.02242 0.96974 0.92800 0.85033 0.91327 0.86849 0.86007 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.70 127.69 1.37 1.82 16 2 N -0.70 -15.15 6.86 -537.12 -3.68 -18.84 16 3 C 0.04 0.83 5.36 86.30 0.46 1.29 16 4 C 0.13 3.72 3.14 30.59 0.10 3.81 16 5 H 0.10 2.87 6.40 -2.39 -0.02 2.86 16 6 O -0.56 -17.21 12.72 -148.98 -1.90 -19.10 16 7 C 0.04 1.33 4.45 86.30 0.38 1.72 16 8 N -0.50 -21.75 4.52 -875.54 -3.95 -25.70 16 9 C 0.21 11.11 3.38 85.56 0.29 11.40 16 10 C -0.52 -29.34 8.58 25.60 0.22 -29.12 16 11 H 0.06 3.47 7.57 -2.91 -0.02 3.45 16 12 C 0.00 0.03 5.46 84.66 0.46 0.50 16 13 N -0.94 -56.61 13.29 21.45 0.28 -56.32 16 14 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 15 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 C 0.02 0.64 5.83 44.91 0.26 0.90 16 19 C -0.22 -8.22 9.56 30.59 0.29 -7.92 16 20 C -0.17 -6.03 9.91 30.59 0.30 -5.72 16 21 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 23 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.35 7.42 8.37 -89.69 -0.75 6.67 16 25 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.38 10.03 9.05 -74.06 -0.67 9.36 16 28 H 0.07 2.66 7.21 -2.39 -0.02 2.65 16 29 H 0.03 1.11 8.12 -2.38 -0.02 1.09 16 30 H -0.04 -2.32 7.82 -2.38 -0.02 -2.34 16 31 H 0.01 0.71 5.63 -2.39 -0.01 0.70 16 32 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 33 H 0.13 4.13 6.34 -2.38 -0.02 4.12 16 34 H 0.07 3.05 6.02 -2.39 -0.01 3.03 16 35 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 36 H 0.12 3.44 8.14 -2.39 -0.02 3.42 16 37 H 0.07 2.83 7.48 -2.39 -0.02 2.81 16 Total: -1.00 -65.28 299.93 -3.44 -68.72 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: -0.36 Total: 26.31 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 4.14 Total: -21.34 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -7.35 Total: -100.86 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -1.90 Total: -19.10 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -65.28 -3.44 -68.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531018.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.172 kcal (2) G-P(sol) polarization free energy of solvation -65.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds