Wall clock time and date at job start Mon Mar 30 2020 03:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33340 * 122.70433 * 2 1 4 4 S 1.76165 * 108.10369 * 180.02562 * 3 2 1 5 5 C 1.70973 * 90.35885 * 359.97438 * 4 3 2 6 6 S 1.76198 * 124.95301 * 180.02562 * 5 4 3 7 7 C 1.81003 * 99.99843 * 359.97438 * 6 5 4 8 8 H 1.09005 * 109.46935 * 304.99665 * 7 6 5 9 9 C 1.52999 * 109.47419 * 65.00165 * 7 6 5 10 10 C 1.50706 * 109.46896 * 185.00273 * 7 6 5 11 11 H 1.07999 * 119.99820 * 359.97438 * 10 7 6 12 12 C 1.37872 * 119.99772 * 179.97438 * 10 7 6 13 13 N 1.31522 * 119.99662 * 180.02562 * 12 10 7 14 14 Si 1.86792 * 120.00290 * 359.97438 * 12 10 7 15 15 H 1.48491 * 109.47505 * 90.00196 * 14 12 10 16 16 H 1.48505 * 109.47444 * 210.00528 * 14 12 10 17 17 H 1.48504 * 109.47357 * 329.99839 * 14 12 10 18 18 N 1.29761 * 110.09228 * 359.73235 * 5 4 3 19 19 H 1.09002 * 109.47152 * 90.00204 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.00305 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.00286 * 1 2 3 22 22 H 1.07994 * 125.94393 * 359.95842 * 3 2 1 23 23 H 1.08998 * 109.47141 * 59.99679 * 9 7 6 24 24 H 1.08996 * 109.47062 * 180.02562 * 9 7 6 25 25 H 1.09000 * 109.47029 * 299.99737 * 9 7 6 26 26 H 0.96996 * 119.99873 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2275 1.1220 0.0000 4 16 3.9322 0.6779 -0.0007 5 6 3.5116 -0.9792 -0.0002 6 16 4.6630 -2.3130 0.0001 7 6 6.2177 -1.3860 -0.0011 8 1 6.2275 -0.6941 -0.8434 9 6 6.3441 -0.6004 1.3058 10 6 7.3740 -2.3445 -0.1248 11 1 7.1899 -3.4064 -0.1953 12 6 8.6667 -1.8658 -0.1481 13 7 9.6758 -2.7024 -0.2567 14 14 8.9850 -0.0292 -0.0270 15 1 9.1327 0.3546 1.3998 16 1 10.2312 0.3068 -0.7615 17 1 7.8442 0.7113 -0.6233 18 7 2.2208 -1.1115 0.0061 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 0.8900 0.5138 21 1 -0.3633 -0.8900 0.5139 22 1 1.8343 2.1278 -0.0006 23 1 6.3342 -1.2922 2.1480 24 1 7.2801 -0.0418 1.3048 25 1 5.5078 0.0929 1.3953 26 1 10.5853 -2.3657 -0.2727 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048247752.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:19 Heat of formation + Delta-G solvation = 39.331189 kcal Electronic energy + Delta-G solvation = -11584.683782 eV Core-core repulsion = 9495.515083 eV Total energy + Delta-G solvation = -2089.168698 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 229.029 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.30974 -34.39765 -31.85545 -31.35739 -27.49131 -25.61746 -24.66322 -21.80738 -19.41808 -18.22876 -16.92478 -16.27227 -15.00999 -14.69877 -14.51590 -13.60657 -13.45748 -13.16227 -12.83386 -12.58518 -12.34832 -12.04808 -11.46286 -11.02989 -10.78824 -10.61814 -10.06473 -9.80918 -9.50213 -9.45045 -9.03827 -8.84773 -8.64680 -6.98079 -6.34403 -4.40716 0.91920 1.49288 1.78573 2.10982 2.98495 3.09932 3.18513 3.22660 3.25285 4.15992 4.68649 4.94742 5.26297 5.39093 5.59377 5.75529 5.91260 5.93007 6.00798 6.08682 6.37535 6.44958 6.87591 7.19673 7.92576 8.10036 8.63459 9.19941 10.76758 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.052839 B = 0.008373 C = 0.007445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.784142 B = 3343.451619 C = 3759.770044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.078 3.922 3 C -0.299 4.299 4 S 0.133 5.867 5 C 0.036 3.964 6 S 0.013 5.987 7 C 0.026 3.974 8 H 0.057 0.943 9 C -0.160 4.160 10 C -0.516 4.516 11 H 0.089 0.911 12 C 0.088 3.912 13 N -0.882 5.882 14 Si 0.882 3.118 15 H -0.272 1.272 16 H -0.289 1.289 17 H -0.263 1.263 18 N -0.475 5.475 19 H 0.072 0.928 20 H 0.071 0.929 21 H 0.074 0.926 22 H 0.169 0.831 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.041 0.959 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.935 8.593 1.170 14.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.057 4.057 3 C -0.442 4.442 4 S 0.384 5.616 5 C -0.349 4.349 6 S 0.249 5.751 7 C -0.104 4.104 8 H 0.075 0.925 9 C -0.220 4.220 10 C -0.555 4.555 11 H 0.107 0.893 12 C -0.118 4.118 13 N -0.518 5.518 14 Si 0.711 3.289 15 H -0.198 1.198 16 H -0.216 1.216 17 H -0.188 1.188 18 N -0.195 5.195 19 H 0.091 0.909 20 H 0.090 0.910 21 H 0.092 0.908 22 H 0.187 0.813 23 H 0.091 0.909 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.137 7.316 1.146 13.374 hybrid contribution -0.385 2.381 0.077 2.414 sum -11.522 9.697 1.223 15.109 Atomic orbital electron populations 1.20316 0.87550 1.02966 1.02634 1.20313 0.97923 0.86683 1.00778 1.26718 0.96684 1.03416 1.17372 1.84396 1.06216 1.01870 1.69097 1.29141 0.98886 1.01667 1.05210 1.85826 0.95777 1.05338 1.88146 1.21715 0.93086 0.98058 0.97535 0.92483 1.22661 1.00044 0.99782 0.99495 1.20238 0.87478 0.94143 1.53639 0.89322 1.24815 0.95377 0.97954 0.93640 1.69831 0.99234 1.34793 1.47948 0.86903 0.77990 0.85629 0.78395 1.19839 1.21642 1.18768 1.66573 1.02686 1.30508 1.19697 0.90890 0.91038 0.90750 0.81306 0.90892 0.92416 0.94032 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.31 36.01 0.37 -0.47 15 2 C 0.08 1.22 6.74 -84.19 -0.57 0.65 15 3 C -0.30 -4.34 11.10 29.02 0.32 -4.02 15 4 S 0.13 2.26 18.68 -107.50 -2.01 0.25 15 5 C 0.04 0.71 7.38 51.89 0.38 1.09 15 6 S 0.01 0.28 21.68 -107.50 -2.33 -2.05 15 7 C 0.03 0.59 1.67 -27.88 -0.05 0.54 15 8 H 0.06 1.31 6.79 -51.91 -0.35 0.95 15 9 C -0.16 -3.32 8.34 37.16 0.31 -3.01 15 10 C -0.52 -13.74 9.16 -34.44 -0.32 -14.06 15 11 H 0.09 2.57 7.95 -52.49 -0.42 2.16 15 12 C 0.09 2.39 5.45 -17.82 -0.10 2.29 15 13 N -0.88 -25.41 13.96 55.43 0.77 -24.64 15 14 Si 0.88 20.29 24.37 -169.99 -4.14 16.15 15 15 H -0.27 -6.04 6.87 56.52 0.39 -5.65 15 16 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 17 H -0.26 -5.74 6.53 56.52 0.37 -5.37 15 18 N -0.47 -8.99 10.59 -10.94 -0.12 -9.11 15 19 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.07 0.63 8.12 -51.93 -0.42 0.20 15 21 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.17 1.88 8.06 -52.49 -0.42 1.45 15 23 H 0.07 1.48 8.14 -51.93 -0.42 1.06 15 24 H 0.06 1.22 3.28 -51.93 -0.17 1.05 15 25 H 0.04 0.77 4.70 -35.25 -0.17 0.60 15 26 H 0.27 7.27 8.31 -40.82 -0.34 6.93 15 LS Contribution 241.56 15.07 3.64 3.64 Total: -1.00 -28.67 241.56 -6.22 -34.89 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: -2.40 Total: -2.15 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 0.36 Total: -16.98 kcal Atomic # 7 Polarization: -34.40 SS G_CDS: 0.66 Total: -33.74 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.14 Total: 16.15 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -4.34 Total: -1.80 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.67 -6.22 -34.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247752.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.220 kcal (2) G-P(sol) polarization free energy of solvation -28.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds