Wall clock time and date at job start Mon Mar 30 2020 03:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33340 * 122.70433 * 2 1 4 4 S 1.76165 * 108.10369 * 180.02562 * 3 2 1 5 5 C 1.70973 * 90.35885 * 359.97438 * 4 3 2 6 6 S 1.76198 * 124.95301 * 180.02562 * 5 4 3 7 7 C 1.81003 * 99.99843 * 359.97438 * 6 5 4 8 8 H 1.09005 * 109.46935 * 304.99665 * 7 6 5 9 9 C 1.52999 * 109.47419 * 65.00165 * 7 6 5 10 10 C 1.50706 * 109.46896 * 185.00273 * 7 6 5 11 11 H 1.07999 * 119.99820 * 359.97438 * 10 7 6 12 12 C 1.37872 * 119.99772 * 179.97438 * 10 7 6 13 13 N 1.31522 * 119.99662 * 180.02562 * 12 10 7 14 14 Si 1.86792 * 120.00290 * 359.97438 * 12 10 7 15 15 H 1.48491 * 109.47505 * 90.00196 * 14 12 10 16 16 H 1.48505 * 109.47444 * 210.00528 * 14 12 10 17 17 H 1.48504 * 109.47357 * 329.99839 * 14 12 10 18 18 N 1.29761 * 110.09228 * 359.73235 * 5 4 3 19 19 H 1.09002 * 109.47152 * 90.00204 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.00305 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.00286 * 1 2 3 22 22 H 1.07994 * 125.94393 * 359.95842 * 3 2 1 23 23 H 1.08998 * 109.47141 * 59.99679 * 9 7 6 24 24 H 1.08996 * 109.47062 * 180.02562 * 9 7 6 25 25 H 1.09000 * 109.47029 * 299.99737 * 9 7 6 26 26 H 0.96996 * 119.99873 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2275 1.1220 0.0000 4 16 3.9322 0.6779 -0.0007 5 6 3.5116 -0.9792 -0.0002 6 16 4.6630 -2.3130 0.0001 7 6 6.2177 -1.3860 -0.0011 8 1 6.2275 -0.6941 -0.8434 9 6 6.3441 -0.6004 1.3058 10 6 7.3740 -2.3445 -0.1248 11 1 7.1899 -3.4064 -0.1953 12 6 8.6667 -1.8658 -0.1481 13 7 9.6758 -2.7024 -0.2567 14 14 8.9850 -0.0292 -0.0270 15 1 9.1327 0.3546 1.3998 16 1 10.2312 0.3068 -0.7615 17 1 7.8442 0.7113 -0.6233 18 7 2.2208 -1.1115 0.0061 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 0.8900 0.5138 21 1 -0.3633 -0.8900 0.5139 22 1 1.8343 2.1278 -0.0006 23 1 6.3342 -1.2922 2.1480 24 1 7.2801 -0.0418 1.3048 25 1 5.5078 0.0929 1.3953 26 1 10.5853 -2.3657 -0.2727 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048247752.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:19 Heat of formation + Delta-G solvation = 20.244543 kcal Electronic energy + Delta-G solvation = -11585.511441 eV Core-core repulsion = 9495.515083 eV Total energy + Delta-G solvation = -2089.996358 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 229.029 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.61171 -36.29005 -33.50853 -32.83300 -28.55994 -27.49166 -26.06260 -23.61683 -20.75242 -19.61104 -18.83574 -17.77974 -16.74820 -16.10575 -16.00035 -15.23829 -15.03580 -14.47791 -14.34787 -13.89085 -13.54724 -13.37694 -13.06858 -12.71069 -12.45070 -12.12896 -11.82578 -11.57666 -11.19392 -10.90844 -10.72346 -10.53766 -10.03534 -8.53960 -8.41608 -6.53778 -0.40139 0.12565 0.27009 0.81049 1.29118 1.34769 1.44361 1.60101 1.71893 2.23928 2.91174 3.52101 4.17226 4.27866 4.28076 4.37212 4.42742 4.73002 4.79532 4.85000 4.89534 5.20254 5.26339 5.36519 6.00602 6.49537 6.62893 7.10842 8.73457 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.052839 B = 0.008373 C = 0.007445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.784142 B = 3343.451619 C = 3759.770044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.054 3.946 3 C -0.267 4.267 4 S 0.140 5.860 5 C 0.007 3.993 6 S -0.025 6.025 7 C 0.033 3.967 8 H 0.058 0.942 9 C -0.156 4.156 10 C -0.524 4.524 11 H 0.046 0.954 12 C 0.035 3.965 13 N -0.932 5.932 14 Si 0.940 3.060 15 H -0.254 1.254 16 H -0.290 1.290 17 H -0.241 1.241 18 N -0.489 5.489 19 H 0.086 0.914 20 H 0.103 0.897 21 H 0.069 0.931 22 H 0.213 0.787 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.935 11.970 1.515 18.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.080 4.080 3 C -0.409 4.409 4 S 0.390 5.610 5 C -0.378 4.378 6 S 0.210 5.790 7 C -0.097 4.097 8 H 0.076 0.924 9 C -0.215 4.215 10 C -0.563 4.563 11 H 0.064 0.936 12 C -0.167 4.167 13 N -0.569 5.569 14 Si 0.764 3.236 15 H -0.179 1.179 16 H -0.217 1.217 17 H -0.164 1.164 18 N -0.210 5.210 19 H 0.104 0.896 20 H 0.121 0.879 21 H 0.088 0.912 22 H 0.230 0.770 23 H 0.088 0.912 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.172 10.692 1.497 17.031 hybrid contribution 0.039 1.333 -0.061 1.335 sum -13.132 12.026 1.436 17.864 Atomic orbital electron populations 1.20462 0.84390 1.04352 1.03919 1.20993 0.99902 0.85974 1.01097 1.27230 0.94645 1.05082 1.13990 1.84234 1.08469 0.99845 1.68408 1.28692 0.98845 1.02055 1.08195 1.85818 0.96293 1.07057 1.89880 1.21487 0.92307 0.97257 0.98655 0.92403 1.22577 1.01048 0.99894 0.97989 1.20385 0.89442 0.93183 1.53300 0.93558 1.25695 0.94901 1.03022 0.93039 1.69972 0.99889 1.37333 1.49735 0.85963 0.78411 0.79707 0.79497 1.17946 1.21673 1.16427 1.66554 1.02814 1.32766 1.18857 0.89580 0.87880 0.91208 0.77011 0.91200 0.92413 0.91584 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.31 71.24 0.73 -0.59 15 2 C 0.05 1.50 6.74 41.41 0.28 1.78 15 3 C -0.27 -6.50 11.10 66.71 0.74 -5.76 15 4 S 0.14 4.32 18.68 -56.49 -1.06 3.27 15 5 C 0.01 0.27 7.38 130.55 0.96 1.23 15 6 S -0.03 -1.09 21.68 -56.49 -1.22 -2.32 15 7 C 0.03 1.50 1.67 29.85 0.05 1.55 15 8 H 0.06 2.60 6.79 -2.39 -0.02 2.58 15 9 C -0.16 -6.23 8.34 71.98 0.60 -5.63 15 10 C -0.52 -28.89 9.16 25.60 0.23 -28.66 15 11 H 0.05 2.87 7.95 -2.91 -0.02 2.84 15 12 C 0.04 1.93 5.45 84.65 0.46 2.39 15 13 N -0.93 -55.42 13.96 21.45 0.30 -55.12 15 14 Si 0.94 41.02 24.37 68.60 1.67 42.69 15 15 H -0.25 -10.34 6.87 99.48 0.68 -9.66 15 16 H -0.29 -12.59 7.11 99.48 0.71 -11.89 15 17 H -0.24 -9.58 6.53 99.48 0.65 -8.93 15 18 N -0.49 -17.71 10.59 -188.52 -2.00 -19.71 15 19 H 0.09 1.37 8.14 -2.39 -0.02 1.36 15 20 H 0.10 1.25 8.12 -2.39 -0.02 1.23 15 21 H 0.07 1.36 8.14 -2.38 -0.02 1.34 15 22 H 0.21 3.27 8.06 -2.91 -0.02 3.25 15 23 H 0.07 2.80 8.14 -2.39 -0.02 2.78 15 24 H 0.06 2.30 3.28 -2.39 -0.01 2.29 15 25 H 0.07 2.30 4.70 -12.99 -0.06 2.24 15 26 H 0.27 15.13 8.31 -92.71 -0.77 14.36 15 Total: -1.00 -63.90 241.56 2.82 -61.09 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.06 Total: 3.79 kcal Atomic # 6 Polarization: -37.75 SS G_CDS: 4.06 Total: -33.69 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -1.70 Total: -74.83 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.67 Total: 42.69 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.28 Total: 0.95 kcal Total: -63.90 2.82 -61.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247752.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.330 kcal (2) G-P(sol) polarization free energy of solvation -63.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds