Wall clock time and date at job start Mon Mar 30 2020 03:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00404 * 2 1 4 4 C 1.53002 * 109.47159 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47070 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47336 * 179.97438 * 5 4 3 7 7 C 1.46895 * 110.99989 * 170.00208 * 6 5 4 8 8 C 1.53241 * 109.33538 * 187.25118 * 7 6 5 9 9 N 1.47082 * 108.52509 * 306.16899 * 8 7 6 10 10 C 1.36935 * 120.87800 * 231.18634 * 9 8 7 11 11 H 1.07994 * 120.00243 * 27.12925 * 10 9 8 12 12 C 1.38815 * 119.99552 * 206.84012 * 10 9 8 13 13 N 1.31614 * 119.99986 * 17.18837 * 12 10 9 14 14 Si 1.86797 * 120.00057 * 197.17547 * 12 10 9 15 15 H 1.48508 * 109.47149 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47196 * 120.00464 * 14 12 10 17 17 H 1.48497 * 109.47565 * 240.00842 * 14 12 10 18 18 C 1.47072 * 118.23374 * 51.45730 * 9 8 7 19 19 C 1.46908 * 110.99894 * 294.30296 * 6 5 4 20 20 H 1.09000 * 109.47565 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47027 * 300.01017 * 1 2 3 22 22 H 1.09008 * 109.46762 * 59.99881 * 1 2 3 23 23 H 1.08995 * 109.47197 * 59.99572 * 3 2 1 24 24 H 1.09005 * 109.47166 * 299.99889 * 3 2 1 25 25 H 1.08999 * 109.47152 * 59.99968 * 4 3 2 26 26 H 1.09001 * 109.47067 * 299.99438 * 4 3 2 27 27 H 1.09007 * 109.46749 * 59.99839 * 5 4 3 28 28 H 1.09001 * 109.46898 * 299.99763 * 5 4 3 29 29 H 1.08994 * 109.49506 * 67.29451 * 7 6 5 30 30 H 1.08994 * 109.51398 * 307.22151 * 7 6 5 31 31 H 1.09003 * 109.62622 * 186.45689 * 8 7 6 32 32 H 1.08999 * 109.62950 * 65.87970 * 8 7 6 33 33 H 0.97002 * 120.00194 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.62781 * 68.25550 * 18 9 8 35 35 H 1.09007 * 109.62956 * 188.83247 * 18 9 8 36 36 H 1.09005 * 109.49135 * 292.70628 * 19 6 5 37 37 H 1.09006 * 109.49151 * 52.78388 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1579 2.5822 -0.0013 6 7 5.6223 2.4662 -0.0013 7 6 6.2537 3.7709 -0.2400 8 6 7.7643 3.5794 -0.4127 9 7 8.2783 2.8436 0.7525 10 6 9.3535 3.3107 1.4603 11 1 9.5666 4.3692 1.4828 12 6 10.1660 2.4242 2.1537 13 7 10.1265 1.1387 1.8739 14 14 11.3156 3.0557 3.4837 15 1 11.1711 4.5287 3.6045 16 1 10.9717 2.4171 4.7795 17 1 12.7178 2.7234 3.1248 18 6 7.6106 1.5898 1.1335 19 6 6.1025 1.8625 1.2489 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 1.6886 1.8464 0.8899 24 1 1.6887 1.8464 -0.8900 25 1 3.8567 0.6437 -0.8908 26 1 3.8574 0.6435 0.8892 27 1 3.8366 3.1234 0.8888 28 1 3.8359 3.1229 -0.8913 29 1 6.0651 4.4271 0.6095 30 1 5.8379 4.2167 -1.1435 31 1 8.2518 4.5523 -0.4756 32 1 7.9597 3.0095 -1.3210 33 1 10.6940 0.5191 2.3588 34 1 7.7915 0.8322 0.3709 35 1 7.9965 1.2465 2.0934 36 1 5.9159 2.5454 2.0778 37 1 5.5769 0.9239 1.4250 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049811797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:02 Heat of formation + Delta-G solvation = -19.727527 kcal Electronic energy + Delta-G solvation = -16273.233345 eV Core-core repulsion = 13665.382777 eV Total energy + Delta-G solvation = -2607.850567 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.44557 -37.72234 -34.80312 -32.39227 -30.65959 -29.85020 -27.42527 -26.15964 -24.15523 -22.83311 -22.31302 -20.73149 -19.05860 -16.84525 -16.41068 -16.21549 -15.41081 -14.80356 -14.59628 -14.25771 -13.84984 -13.60711 -13.38438 -13.00187 -12.77892 -12.00724 -11.87599 -11.66005 -11.29548 -11.04434 -11.00111 -10.80697 -10.69986 -10.35208 -10.23241 -9.99644 -9.78592 -9.68645 -9.51659 -8.47486 -7.77104 -6.62609 -5.74711 -3.15962 3.39145 3.46819 3.49084 3.59937 4.48896 4.55115 4.96388 5.04138 5.16085 5.27522 5.34582 5.41278 5.41783 5.46799 5.50463 5.59803 5.79268 5.94876 5.99576 6.17914 6.22082 6.27625 6.37241 6.40739 6.61053 6.74094 6.97409 7.05985 7.30026 7.66637 7.70391 7.75725 7.86354 8.47163 9.24780 9.88368 10.47345 11.33994 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.049066 B = 0.005114 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.523139 B = 5474.054276 C = 5794.878483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.064 3.936 4 C -0.116 4.116 5 C 0.059 3.941 6 N -0.533 5.533 7 C 0.045 3.955 8 C 0.148 3.852 9 N -0.596 5.596 10 C -0.251 4.251 11 H 0.066 0.934 12 C 0.001 3.999 13 N -0.903 5.903 14 Si 0.901 3.099 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.290 1.290 18 C 0.178 3.822 19 C 0.032 3.968 20 H 0.084 0.916 21 H 0.039 0.961 22 H 0.039 0.961 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.026 0.974 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.026 0.974 33 H 0.253 0.747 34 H 0.027 0.973 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.961 1.339 -3.184 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.013 4.013 4 C -0.154 4.154 5 C -0.070 4.070 6 N -0.258 5.258 7 C -0.084 4.084 8 C 0.022 3.978 9 N -0.320 5.320 10 C -0.381 4.381 11 H 0.084 0.916 12 C -0.198 4.198 13 N -0.547 5.547 14 Si 0.731 3.269 15 H -0.203 1.203 16 H -0.216 1.216 17 H -0.217 1.217 18 C 0.052 3.948 19 C -0.097 4.097 20 H 0.102 0.898 21 H 0.057 0.943 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.106 0.894 36 H 0.042 0.958 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.586 0.754 -3.487 15.989 hybrid contribution 0.077 1.026 1.367 1.711 sum -15.510 1.780 -2.119 15.755 Atomic orbital electron populations 1.22717 0.81392 1.02582 0.99778 1.87896 1.19391 1.28356 1.95379 1.22524 0.94661 0.84317 0.99816 1.21515 0.91551 0.98056 1.04255 1.21942 0.89498 0.95551 0.99975 1.61918 1.03474 1.23904 1.36464 1.22608 0.97980 0.89020 0.98824 1.20980 0.89989 0.95972 0.90894 1.44157 1.33574 1.24761 1.29482 1.19238 1.03184 0.91588 1.24104 0.91646 1.25025 0.97739 0.95714 1.01282 1.70042 1.41361 1.01783 1.41562 0.86235 0.80435 0.78229 0.81952 1.20337 1.21597 1.21712 1.20957 0.85184 0.87689 1.00956 1.23045 1.00454 0.97582 0.88629 0.89756 0.94257 0.94232 0.93606 0.93445 0.90266 0.90858 0.95606 0.91423 0.95532 0.92099 0.92652 0.95657 0.93680 0.95498 0.89420 0.95796 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.99 10.70 -35.23 -0.38 -5.37 16 3 C 0.06 0.74 5.94 37.16 0.22 0.96 16 4 C -0.12 -1.59 5.52 -26.73 -0.15 -1.74 16 5 C 0.06 0.86 4.96 -3.82 -0.02 0.84 16 6 N -0.53 -9.82 4.63 -234.02 -1.08 -10.90 16 7 C 0.05 0.83 5.62 -3.70 -0.02 0.81 16 8 C 0.15 3.25 6.69 -3.60 -0.02 3.22 16 9 N -0.60 -15.54 3.03 -171.74 -0.52 -16.06 16 10 C -0.25 -7.07 9.63 -15.06 -0.15 -7.22 16 11 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 12 C 0.00 0.02 4.93 -17.43 -0.09 -0.06 16 13 N -0.90 -26.67 11.16 55.49 0.62 -26.05 16 14 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 C 0.18 4.44 5.45 -3.37 -0.02 4.42 16 19 C 0.03 0.65 5.48 -3.46 -0.02 0.63 16 20 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 21 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 22 H 0.04 0.30 8.14 -51.92 -0.42 -0.12 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.07 1.09 6.40 -51.93 -0.33 0.75 16 27 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 28 H 0.07 0.88 7.97 -51.93 -0.41 0.47 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.96 7.99 -51.93 -0.41 0.54 16 31 H 0.06 1.16 7.95 -51.93 -0.41 0.74 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 2.40 6.12 -51.93 -0.32 2.08 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 1.19 6.16 -51.93 -0.32 0.87 16 LS Contribution 293.99 15.07 4.43 4.43 Total: -1.00 -30.73 293.99 -7.52 -38.25 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -6.41 Total: -4.47 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 0.85 Total: 3.27 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.98 Total: -53.02 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.38 Total: -5.37 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.73 -7.52 -38.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049811797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.521 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds