Wall clock time and date at job start Mon Mar 30 2020 03:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00404 * 2 1 4 4 C 1.53002 * 109.47159 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47070 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.47336 * 179.97438 * 5 4 3 7 7 C 1.46895 * 110.99989 * 170.00208 * 6 5 4 8 8 C 1.53241 * 109.33538 * 187.25118 * 7 6 5 9 9 N 1.47082 * 108.52509 * 306.16899 * 8 7 6 10 10 C 1.36935 * 120.87800 * 231.18634 * 9 8 7 11 11 H 1.07994 * 120.00243 * 27.12925 * 10 9 8 12 12 C 1.38815 * 119.99552 * 206.84012 * 10 9 8 13 13 N 1.31614 * 119.99986 * 17.18837 * 12 10 9 14 14 Si 1.86797 * 120.00057 * 197.17547 * 12 10 9 15 15 H 1.48508 * 109.47149 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47196 * 120.00464 * 14 12 10 17 17 H 1.48497 * 109.47565 * 240.00842 * 14 12 10 18 18 C 1.47072 * 118.23374 * 51.45730 * 9 8 7 19 19 C 1.46908 * 110.99894 * 294.30296 * 6 5 4 20 20 H 1.09000 * 109.47565 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47027 * 300.01017 * 1 2 3 22 22 H 1.09008 * 109.46762 * 59.99881 * 1 2 3 23 23 H 1.08995 * 109.47197 * 59.99572 * 3 2 1 24 24 H 1.09005 * 109.47166 * 299.99889 * 3 2 1 25 25 H 1.08999 * 109.47152 * 59.99968 * 4 3 2 26 26 H 1.09001 * 109.47067 * 299.99438 * 4 3 2 27 27 H 1.09007 * 109.46749 * 59.99839 * 5 4 3 28 28 H 1.09001 * 109.46898 * 299.99763 * 5 4 3 29 29 H 1.08994 * 109.49506 * 67.29451 * 7 6 5 30 30 H 1.08994 * 109.51398 * 307.22151 * 7 6 5 31 31 H 1.09003 * 109.62622 * 186.45689 * 8 7 6 32 32 H 1.08999 * 109.62950 * 65.87970 * 8 7 6 33 33 H 0.97002 * 120.00194 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.62781 * 68.25550 * 18 9 8 35 35 H 1.09007 * 109.62956 * 188.83247 * 18 9 8 36 36 H 1.09005 * 109.49135 * 292.70628 * 19 6 5 37 37 H 1.09006 * 109.49151 * 52.78388 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1579 2.5822 -0.0013 6 7 5.6223 2.4662 -0.0013 7 6 6.2537 3.7709 -0.2400 8 6 7.7643 3.5794 -0.4127 9 7 8.2783 2.8436 0.7525 10 6 9.3535 3.3107 1.4603 11 1 9.5666 4.3692 1.4828 12 6 10.1660 2.4242 2.1537 13 7 10.1265 1.1387 1.8739 14 14 11.3156 3.0557 3.4837 15 1 11.1711 4.5287 3.6045 16 1 10.9717 2.4171 4.7795 17 1 12.7178 2.7234 3.1248 18 6 7.6106 1.5898 1.1335 19 6 6.1025 1.8625 1.2489 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 1.6886 1.8464 0.8899 24 1 1.6887 1.8464 -0.8900 25 1 3.8567 0.6437 -0.8908 26 1 3.8574 0.6435 0.8892 27 1 3.8366 3.1234 0.8888 28 1 3.8359 3.1229 -0.8913 29 1 6.0651 4.4271 0.6095 30 1 5.8379 4.2167 -1.1435 31 1 8.2518 4.5523 -0.4756 32 1 7.9597 3.0095 -1.3210 33 1 10.6940 0.5191 2.3588 34 1 7.7915 0.8322 0.3709 35 1 7.9965 1.2465 2.0934 36 1 5.9159 2.5454 2.0778 37 1 5.5769 0.9239 1.4250 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049811797.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:01 Heat of formation + Delta-G solvation = -41.172807 kcal Electronic energy + Delta-G solvation = -16274.163282 eV Core-core repulsion = 13665.382777 eV Total energy + Delta-G solvation = -2608.780505 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.85409 -38.78450 -36.50054 -33.99301 -32.31460 -31.61618 -28.77479 -27.35442 -25.61199 -24.45204 -23.95053 -21.95389 -20.83314 -18.74510 -17.45067 -17.13912 -16.91800 -16.33524 -15.93336 -15.65086 -15.31618 -15.17136 -15.09657 -14.77639 -14.24230 -13.30674 -13.14900 -12.92154 -12.86638 -12.64100 -12.57516 -12.24183 -12.09376 -11.97003 -11.95047 -11.77279 -11.48527 -11.29875 -10.60086 -10.58591 -9.26040 -8.68869 -7.88063 -5.33409 1.45978 1.47236 1.58389 2.50374 2.68130 3.19949 3.28204 3.68353 3.97142 4.17940 4.22041 4.34422 4.36157 4.46414 4.53768 4.54384 4.56116 4.65275 4.66928 4.67793 4.77095 4.86462 4.89254 5.02887 5.16166 5.21643 5.29476 5.37062 5.60761 5.66784 6.18720 6.24016 6.33570 6.37226 7.12343 7.83129 8.37948 9.18928 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.049066 B = 0.005114 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.523139 B = 5474.054276 C = 5794.878483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.068 3.932 4 C -0.111 4.111 5 C 0.064 3.936 6 N -0.546 5.546 7 C 0.056 3.944 8 C 0.142 3.858 9 N -0.616 5.616 10 C -0.266 4.266 11 H 0.069 0.931 12 C -0.052 4.052 13 N -0.937 5.937 14 Si 0.970 3.030 15 H -0.266 1.266 16 H -0.289 1.289 17 H -0.291 1.291 18 C 0.185 3.815 19 C 0.050 3.950 20 H 0.094 0.906 21 H 0.049 0.951 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.092 0.908 29 H 0.024 0.976 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.015 0.985 33 H 0.250 0.750 34 H -0.003 1.003 35 H 0.056 0.944 36 H 0.019 0.981 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.729 2.708 -3.339 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.009 4.009 4 C -0.149 4.149 5 C -0.064 4.064 6 N -0.271 5.271 7 C -0.073 4.073 8 C 0.017 3.983 9 N -0.340 5.340 10 C -0.396 4.396 11 H 0.086 0.914 12 C -0.247 4.247 13 N -0.583 5.583 14 Si 0.798 3.202 15 H -0.190 1.190 16 H -0.216 1.216 17 H -0.218 1.218 18 C 0.059 3.941 19 C -0.079 4.079 20 H 0.112 0.888 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.111 0.889 29 H 0.043 0.957 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.059 0.941 34 H 0.015 0.985 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.389 2.148 -3.661 17.900 hybrid contribution 0.589 0.585 1.336 1.573 sum -16.801 2.733 -2.325 17.179 Atomic orbital electron populations 1.22922 0.79433 1.03739 1.00938 1.87847 1.21609 1.29053 1.95630 1.22469 0.92872 0.84321 1.01216 1.21429 0.93455 0.97237 1.02807 1.21992 0.86515 0.96365 1.01530 1.61851 1.06147 1.24025 1.35033 1.22468 0.95345 0.89080 1.00442 1.21159 0.92701 0.95489 0.88997 1.44451 1.33555 1.25141 1.30854 1.19593 1.03679 0.91881 1.24412 0.91360 1.25828 0.99641 0.95888 1.03390 1.70204 1.42449 1.02973 1.42653 0.85169 0.78017 0.78189 0.78830 1.19021 1.21596 1.21802 1.20703 0.88293 0.86927 0.98138 1.22681 0.97128 0.98498 0.89618 0.88764 0.93216 0.92882 0.92498 0.91639 0.91515 0.92536 0.94739 0.88927 0.95743 0.88416 0.91959 0.96684 0.94051 0.98492 0.92608 0.96297 0.90350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -9.96 10.70 -148.98 -1.59 -11.56 16 3 C 0.07 1.40 5.94 71.98 0.43 1.83 16 4 C -0.11 -2.85 5.52 30.60 0.17 -2.68 16 5 C 0.06 1.66 4.96 86.30 0.43 2.09 16 6 N -0.55 -19.16 4.63 -894.30 -4.14 -23.30 16 7 C 0.06 1.93 5.62 86.38 0.49 2.41 16 8 C 0.14 6.14 6.69 86.35 0.58 6.72 16 9 N -0.62 -32.54 3.03 -697.26 -2.11 -34.65 16 10 C -0.27 -15.09 9.63 84.03 0.81 -14.28 16 11 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 12 C -0.05 -2.99 4.93 84.86 0.42 -2.58 16 13 N -0.94 -57.00 11.16 21.65 0.24 -56.75 16 14 Si 0.97 45.64 29.59 68.60 2.03 47.67 16 15 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 16 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 17 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 18 C 0.19 9.53 5.45 86.50 0.47 10.00 16 19 C 0.05 2.02 5.48 86.53 0.47 2.49 16 20 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 22 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.06 1.62 6.40 -2.39 -0.02 1.60 16 27 H 0.03 0.87 8.12 -2.38 -0.02 0.85 16 28 H 0.09 2.01 7.97 -2.39 -0.02 1.99 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 2.69 7.99 -2.39 -0.02 2.67 16 31 H 0.06 2.55 7.95 -2.39 -0.02 2.53 16 32 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.06 3.19 6.12 -2.38 -0.01 3.17 16 36 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.08 2.91 6.16 -2.38 -0.01 2.89 16 Total: -1.00 -66.94 293.99 0.94 -65.99 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: 1.01 Total: 4.95 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 5.51 Total: 7.65 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -6.01 Total: -114.71 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -1.59 Total: -11.56 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -66.94 0.94 -65.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049811797.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.822 kcal (2) G-P(sol) polarization free energy of solvation -66.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds