Wall clock time and date at job start Mon Mar 30 2020 03:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.38264 * 119.96824 * 269.72187 * 11 10 9 13 13 C 1.38195 * 120.05227 * 179.73361 * 12 11 10 14 14 C 1.38445 * 119.98351 * 0.51612 * 13 12 11 15 15 F 1.35098 * 120.03087 * 179.72747 * 14 13 12 16 16 C 1.38553 * 119.94118 * 359.76211 * 14 13 12 17 17 Cl 1.73595 * 120.02792 * 180.02562 * 16 14 13 18 18 C 1.38214 * 119.97033 * 90.00174 * 11 10 9 19 19 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 20 20 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 21 21 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 22 22 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 23 23 H 1.07999 * 119.97555 * 0.02562 * 12 11 10 24 24 H 1.07992 * 120.01187 * 180.25329 * 13 12 11 25 25 H 1.07996 * 119.99279 * 359.97438 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.5937 -2.1954 -0.0115 12 6 6.2692 -2.0711 -1.2114 13 6 7.6268 -1.8131 -1.2178 14 6 8.3133 -1.6895 -0.0219 15 9 9.6415 -1.4427 -0.0270 16 6 7.6369 -1.8198 1.1803 17 17 8.4952 -1.6645 2.6812 18 6 6.2770 -2.0729 1.1837 19 1 -0.4851 0.8401 0.0004 20 1 3.8646 -0.3620 0.0004 21 1 3.8521 -3.0451 0.8825 22 1 3.8454 -3.0397 -0.8974 23 1 5.7346 -2.1712 -2.1445 24 1 8.1531 -1.7121 -2.1554 25 1 5.7490 -2.1743 2.1203 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053156696.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:14 Heat of formation + Delta-G solvation = -16.169074 kcal Electronic energy + Delta-G solvation = -13090.702977 eV Core-core repulsion = 10430.870725 eV Total energy + Delta-G solvation = -2659.832253 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.99720 -39.29059 -36.65634 -34.89148 -31.99012 -30.99118 -30.05664 -25.80942 -23.17731 -22.56029 -21.14005 -18.02594 -17.67383 -16.64943 -15.80443 -15.77065 -14.68683 -14.35166 -14.04524 -13.59595 -13.54265 -13.00029 -12.74413 -12.41977 -11.95218 -11.47697 -11.36328 -11.15604 -10.90975 -10.79675 -10.21371 -9.66295 -9.03233 -8.98810 -8.60696 -7.33619 -5.83358 -3.20664 0.93475 1.05577 1.95063 3.34240 3.38014 3.39857 3.44109 4.03239 4.54024 4.59158 4.83474 5.08672 5.19897 5.41973 5.53193 5.60960 5.84686 5.88756 6.05149 6.13442 6.37970 6.67320 6.71929 7.90422 8.34790 9.12524 9.84650 10.03309 11.34520 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.035489 B = 0.006712 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.795983 B = 4170.354526 C = 4299.402061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.882 3.118 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.093 0.907 9 N -0.751 5.751 10 C 0.193 3.807 11 C -0.080 4.080 12 C -0.072 4.072 13 C -0.145 4.145 14 C 0.098 3.902 15 F -0.133 7.133 16 C -0.075 4.075 17 Cl -0.058 7.058 18 C -0.069 4.069 19 H 0.261 0.739 20 H 0.363 0.637 21 H 0.041 0.959 22 H 0.043 0.957 23 H 0.142 0.858 24 H 0.143 0.857 25 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.048 -4.428 0.113 17.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.187 4.187 3 Si 0.712 3.288 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.397 5.397 10 C 0.066 3.934 11 C -0.081 4.081 12 C -0.091 4.091 13 C -0.164 4.164 14 C 0.078 3.922 15 F -0.111 7.111 16 C -0.103 4.103 17 Cl -0.029 7.029 18 C -0.088 4.088 19 H 0.071 0.929 20 H 0.196 0.804 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.160 0.840 24 H 0.160 0.840 25 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 16.916 -4.490 0.257 17.504 hybrid contribution 0.897 1.359 0.166 1.636 sum 17.813 -3.131 0.423 18.091 Atomic orbital electron populations 1.69693 1.05104 1.25989 1.57039 1.24647 0.95192 0.97201 1.01652 0.86589 0.79326 0.84989 0.77919 1.20934 1.21562 1.20242 1.19039 0.80234 0.94894 1.43769 0.88970 1.42693 1.03982 1.01691 1.91318 1.19655 0.83553 0.90007 1.00188 1.20424 0.97829 0.97970 0.91860 1.21175 0.92758 0.96183 0.98996 1.21118 0.95312 1.03497 0.96490 1.17402 0.78055 1.03651 0.93087 1.91510 1.30563 1.91736 1.97295 1.20985 0.93810 1.09166 0.86336 1.98371 1.76895 1.96386 1.31281 1.21020 0.90616 0.97248 0.99947 0.92912 0.80408 0.94099 0.93915 0.83973 0.83955 0.83697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.75 13.97 55.49 0.78 -27.98 15 2 C 0.01 0.27 5.50 -17.43 -0.10 0.17 15 3 Si 0.88 21.82 27.74 -169.99 -4.71 17.11 15 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 15 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 15 6 H -0.28 -6.51 6.52 56.52 0.37 -6.14 15 7 C -0.25 -6.87 10.47 -15.06 -0.16 -7.03 15 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 15 9 N -0.75 -17.18 5.40 -61.09 -0.33 -17.51 15 10 C 0.19 3.46 6.38 -5.19 -0.03 3.43 15 11 C -0.08 -1.20 5.25 -104.62 -0.55 -1.75 15 12 C -0.07 -0.95 9.70 -39.59 -0.38 -1.33 15 13 C -0.15 -1.75 10.03 -39.52 -0.40 -2.14 15 14 C 0.10 1.32 7.28 -39.39 -0.29 1.04 15 15 F -0.13 -1.80 16.84 2.25 0.04 -1.76 15 16 C -0.08 -1.05 6.33 -39.43 -0.25 -1.30 15 17 Cl -0.06 -0.76 28.62 -51.86 -1.48 -2.25 15 18 C -0.07 -1.00 9.48 -39.56 -0.38 -1.37 15 19 H 0.26 7.67 8.31 -40.82 -0.34 7.33 15 20 H 0.36 8.27 5.52 -40.82 -0.23 8.05 15 21 H 0.04 0.73 8.09 -51.93 -0.42 0.31 15 22 H 0.04 0.75 8.08 -51.93 -0.42 0.33 15 23 H 0.14 1.65 8.06 -52.49 -0.42 1.23 15 24 H 0.14 1.34 8.06 -52.49 -0.42 0.91 15 25 H 0.15 2.00 8.06 -52.49 -0.42 1.57 15 LS Contribution 245.94 15.07 3.71 3.71 Total: -1.00 -30.04 245.94 -6.46 -36.50 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -1.92 Total: 2.47 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -2.53 Total: -10.29 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.45 Total: -45.49 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.48 Total: -2.25 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.04 -6.46 -36.50 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053156696.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.332 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds