Wall clock time and date at job start Mon Mar 30 2020 03:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00105 * 2 1 4 4 H 1.48501 * 109.47483 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00271 * 3 2 1 6 6 H 1.48502 * 109.47495 * 149.99894 * 3 2 1 7 7 C 1.38811 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00195 * 0.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.38264 * 119.96824 * 269.72187 * 11 10 9 13 13 C 1.38195 * 120.05227 * 179.73361 * 12 11 10 14 14 C 1.38445 * 119.98351 * 0.51612 * 13 12 11 15 15 F 1.35098 * 120.03087 * 179.72747 * 14 13 12 16 16 C 1.38553 * 119.94118 * 359.76211 * 14 13 12 17 17 Cl 1.73595 * 120.02792 * 180.02562 * 16 14 13 18 18 C 1.38214 * 119.97033 * 90.00174 * 11 10 9 19 19 H 0.97008 * 120.00329 * 359.97438 * 1 2 3 20 20 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 21 21 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 22 22 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 23 23 H 1.07999 * 119.97555 * 0.02562 * 12 11 10 24 24 H 1.07992 * 120.01187 * 180.25329 * 13 12 11 25 25 H 1.07996 * 119.99279 * 359.97438 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 -0.0067 11 6 5.5937 -2.1954 -0.0115 12 6 6.2692 -2.0711 -1.2114 13 6 7.6268 -1.8131 -1.2178 14 6 8.3133 -1.6895 -0.0219 15 9 9.6415 -1.4427 -0.0270 16 6 7.6369 -1.8198 1.1803 17 17 8.4952 -1.6645 2.6812 18 6 6.2770 -2.0729 1.1837 19 1 -0.4851 0.8401 0.0004 20 1 3.8646 -0.3620 0.0004 21 1 3.8521 -3.0451 0.8825 22 1 3.8454 -3.0397 -0.8974 23 1 5.7346 -2.1712 -2.1445 24 1 8.1531 -1.7121 -2.1554 25 1 5.7490 -2.1743 2.1203 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053156696.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:14 Heat of formation + Delta-G solvation = -34.210297 kcal Electronic energy + Delta-G solvation = -13091.485304 eV Core-core repulsion = 10430.870725 eV Total energy + Delta-G solvation = -2660.614579 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.03821 -40.38532 -37.72476 -36.60455 -33.83469 -32.05249 -31.59486 -27.37664 -24.35068 -24.17520 -22.46452 -19.90723 -18.82579 -17.72069 -17.00572 -16.86655 -16.61184 -15.79041 -15.09630 -15.06434 -14.67161 -14.59368 -14.16285 -13.83236 -13.62920 -12.86294 -12.68503 -12.47436 -12.39705 -12.12984 -11.92320 -11.80266 -11.01710 -10.05671 -9.70451 -9.32490 -8.02773 -5.37030 -0.14070 0.02461 0.91136 1.39446 1.41107 1.48512 2.33809 2.48254 2.99832 3.29282 3.58147 3.68299 3.87881 4.07047 4.15063 4.42443 4.76883 4.79675 4.90405 4.96733 5.03996 5.49261 5.64462 5.75873 6.20501 7.06721 7.81075 7.99966 9.18415 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.035489 B = 0.006712 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.795983 B = 4170.354526 C = 4299.402061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.058 4.058 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.256 1.256 7 C -0.235 4.235 8 H 0.063 0.937 9 N -0.754 5.754 10 C 0.192 3.808 11 C -0.092 4.092 12 C -0.068 4.068 13 C -0.132 4.132 14 C 0.095 3.905 15 F -0.133 7.133 16 C -0.084 4.084 17 Cl -0.055 7.055 18 C -0.073 4.073 19 H 0.258 0.742 20 H 0.366 0.634 21 H 0.041 0.959 22 H 0.051 0.949 23 H 0.159 0.841 24 H 0.174 0.826 25 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.323 -4.005 -0.565 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.250 4.250 3 Si 0.777 3.223 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.181 1.181 7 C -0.365 4.365 8 H 0.081 0.919 9 N -0.400 5.400 10 C 0.066 3.934 11 C -0.093 4.093 12 C -0.086 4.086 13 C -0.151 4.151 14 C 0.075 3.925 15 F -0.111 7.111 16 C -0.112 4.112 17 Cl -0.026 7.026 18 C -0.093 4.093 19 H 0.067 0.933 20 H 0.199 0.801 21 H 0.059 0.941 22 H 0.069 0.931 23 H 0.177 0.823 24 H 0.192 0.808 25 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 19.249 -4.101 -0.419 19.686 hybrid contribution 0.243 1.097 0.381 1.187 sum 19.492 -3.004 -0.038 19.722 Atomic orbital electron populations 1.69866 1.07079 1.26717 1.59536 1.25427 0.95980 1.01019 1.02539 0.85497 0.78566 0.80032 0.78244 1.20129 1.22349 1.18069 1.19045 0.82362 0.93695 1.41444 0.91873 1.42703 1.02438 1.03708 1.91119 1.19723 0.85320 0.87961 1.00350 1.20138 0.96029 1.00100 0.93053 1.21356 0.93251 0.95177 0.98821 1.21397 0.94786 1.01683 0.97231 1.17605 0.78105 1.03388 0.93433 1.91514 1.30617 1.91701 1.97309 1.21040 0.93747 1.09503 0.86878 1.98371 1.76704 1.96374 1.31132 1.21003 0.90941 0.97446 0.99861 0.93269 0.80119 0.94138 0.93103 0.82331 0.80814 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.86 13.97 21.65 0.30 -61.56 15 2 C -0.06 -3.34 5.50 84.86 0.47 -2.87 15 3 Si 0.95 44.69 27.74 68.60 1.90 46.59 15 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 15 6 H -0.26 -11.03 6.52 99.48 0.65 -10.39 15 7 C -0.23 -12.94 10.47 84.03 0.88 -12.06 15 8 H 0.06 3.78 8.06 -2.91 -0.02 3.76 15 9 N -0.75 -33.50 5.40 -347.18 -1.87 -35.37 15 10 C 0.19 6.62 6.38 85.63 0.55 7.17 15 11 C -0.09 -2.57 5.25 -19.86 -0.10 -2.67 15 12 C -0.07 -1.54 9.70 22.27 0.22 -1.32 15 13 C -0.13 -2.68 10.03 22.31 0.22 -2.46 15 14 C 0.09 2.27 7.28 22.39 0.16 2.44 15 15 F -0.13 -3.23 16.84 44.97 0.76 -2.47 15 16 C -0.08 -2.16 6.33 22.37 0.14 -2.02 15 17 Cl -0.05 -1.34 28.62 -2.72 -0.08 -1.42 15 18 C -0.07 -1.98 9.48 22.29 0.21 -1.76 15 19 H 0.26 15.54 8.31 -92.70 -0.77 14.77 15 20 H 0.37 15.81 5.52 -92.71 -0.51 15.30 15 21 H 0.04 1.41 8.09 -2.38 -0.02 1.39 15 22 H 0.05 1.69 8.08 -2.39 -0.02 1.68 15 23 H 0.16 3.09 8.06 -2.91 -0.02 3.06 15 24 H 0.17 2.42 8.06 -2.91 -0.02 2.39 15 25 H 0.14 3.81 8.06 -2.91 -0.02 3.79 15 Total: -1.00 -63.81 245.94 4.40 -59.41 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.65 Total: 10.38 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 2.74 Total: -15.56 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -1.57 Total: -96.93 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.76 Total: -2.47 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.90 Total: 46.59 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -63.81 4.40 -59.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053156696.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.198 kcal (2) G-P(sol) polarization free energy of solvation -63.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds