Wall clock time and date at job start Mon Mar 30 2020 03:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35106 * 121.82447 * 2 1 4 4 C 1.46558 * 127.50992 * 0.02562 * 3 2 1 5 5 O 1.21618 * 120.00281 * 359.97438 * 4 3 2 6 6 O 1.34896 * 119.99521 * 180.02562 * 4 3 2 7 7 S 1.77288 * 104.97490 * 180.02562 * 3 2 1 8 8 C 1.72215 * 94.75588 * 359.80925 * 7 3 2 9 9 O 1.21710 * 126.94333 * 180.23417 * 8 7 3 10 10 N 1.34145 * 106.12197 * 0.32376 * 8 7 3 11 11 C 1.37293 * 121.09909 * 179.87625 * 10 8 7 12 12 H 1.08000 * 120.00028 * 143.13583 * 11 10 8 13 13 C 1.38911 * 119.99680 * 323.41142 * 11 10 8 14 14 N 1.31365 * 120.00315 * 339.70707 * 13 11 10 15 15 Si 1.86810 * 119.99514 * 159.70635 * 13 11 10 16 16 H 1.48495 * 109.46897 * 90.00251 * 15 13 11 17 17 H 1.48505 * 109.46899 * 209.99957 * 15 13 11 18 18 H 1.48494 * 109.46967 * 329.99763 * 15 13 11 19 19 H 1.08999 * 109.47100 * 269.97264 * 1 2 3 20 20 H 1.08998 * 109.47574 * 29.97715 * 1 2 3 21 21 H 1.09003 * 109.47130 * 149.97811 * 1 2 3 22 22 H 0.96708 * 116.99737 * 179.97438 * 6 4 3 23 23 H 0.96997 * 119.99588 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2194 1.1480 0.0000 4 6 1.7022 2.5192 0.0005 5 8 0.5021 2.7166 0.0006 6 8 2.5573 3.5625 -0.0001 7 16 3.9162 0.6341 -0.0008 8 6 3.5554 -1.0498 0.0047 9 8 4.3533 -1.9689 0.0103 10 7 2.2173 -1.1441 -0.0005 11 6 1.5925 -2.3666 -0.0006 12 1 0.6781 -2.5058 0.5571 13 6 2.1395 -3.4261 -0.7134 14 7 2.9932 -3.1933 -1.6843 15 14 1.6609 -5.1818 -0.2912 16 1 0.4759 -5.5783 -1.0934 17 1 2.7939 -6.0912 -0.5989 18 1 1.3327 -5.2713 1.1543 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3634 0.8901 -0.5135 21 1 -0.3633 -0.8898 -0.5142 22 1 2.1692 4.4483 -0.0001 23 1 3.3748 -3.9331 -2.1822 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062466555.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:05 Heat of formation + Delta-G solvation = -116.421993 kcal Electronic energy + Delta-G solvation = -13895.815632 eV Core-core repulsion = 11221.307003 eV Total energy + Delta-G solvation = -2674.508629 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.024 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.92676 -40.72561 -38.18749 -36.87041 -35.02195 -32.48578 -30.22518 -27.72670 -24.78256 -24.12462 -21.06328 -19.81422 -19.41216 -18.19835 -17.57368 -17.43257 -16.75602 -16.26399 -16.10086 -15.57580 -14.52233 -14.33081 -14.24141 -13.84242 -13.43826 -13.15072 -12.88471 -12.45441 -12.32155 -12.09277 -12.03324 -11.45952 -11.18784 -10.82502 -10.24604 -8.82758 -8.64849 -6.58712 -0.09025 0.21404 0.99829 1.33397 1.40190 1.53198 1.57854 1.92473 2.05384 2.26610 2.81215 2.89804 4.07317 4.24331 4.68839 4.76081 4.89507 5.11894 5.23200 5.62518 5.71171 6.05925 6.32118 6.85445 7.13173 7.17702 8.37703 Molecular weight = 229.02amu Principal moments of inertia in cm(-1) A = 0.043025 B = 0.010031 C = 0.008460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.635393 B = 2790.652679 C = 3309.057841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.194 3.806 3 C -0.348 4.348 4 C 0.592 3.408 5 O -0.540 6.540 6 O -0.507 6.507 7 S -0.007 6.007 8 C 0.446 3.554 9 O -0.491 6.491 10 N -0.353 5.353 11 C -0.405 4.405 12 H 0.130 0.870 13 C 0.020 3.980 14 N -0.849 5.849 15 Si 1.002 2.998 16 H -0.252 1.252 17 H -0.286 1.286 18 H -0.254 1.254 19 H 0.099 0.901 20 H 0.102 0.898 21 H 0.084 0.916 22 H 0.434 0.566 23 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.640 6.567 2.674 8.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.067 3.933 3 C -0.470 4.470 4 C 0.439 3.561 5 O -0.434 6.434 6 O -0.321 6.321 7 S 0.235 5.765 8 C 0.132 3.868 9 O -0.373 6.373 10 N -0.052 5.052 11 C -0.533 4.533 12 H 0.148 0.852 13 C -0.191 4.191 14 N -0.479 5.479 15 Si 0.822 3.178 16 H -0.176 1.176 17 H -0.211 1.211 18 H -0.178 1.178 19 H 0.118 0.882 20 H 0.121 0.879 21 H 0.103 0.897 22 H 0.295 0.705 23 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.888 6.171 2.503 7.259 hybrid contribution -1.006 -0.997 -0.156 1.425 sum -3.894 5.174 2.346 6.888 Atomic orbital electron populations 1.20945 0.84492 1.05104 1.04670 1.20362 0.97455 0.84369 0.91098 1.21324 0.93816 0.93764 1.38093 1.18302 0.82991 0.83349 0.71437 1.90822 1.16405 1.85837 1.50345 1.84572 1.42441 1.19165 1.85908 1.84148 1.08274 1.01594 1.82498 1.21969 0.85054 0.94731 0.85071 1.90675 1.50432 1.42902 1.53257 1.41809 1.05337 1.07035 1.51023 1.20147 1.13083 0.85356 1.34735 0.85235 1.26536 0.94717 1.05698 0.92199 1.69979 1.26329 1.35702 1.15868 0.84833 0.78218 0.74718 0.79989 1.17607 1.21118 1.17753 0.88236 0.87917 0.89738 0.70453 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.22 8.91 71.24 0.63 -2.59 14 2 C 0.19 8.31 6.58 41.40 0.27 8.58 14 3 C -0.35 -14.12 6.60 23.72 0.16 -13.97 14 4 C 0.59 20.25 8.30 69.99 0.58 20.83 14 5 O -0.54 -19.01 15.13 19.45 0.29 -18.71 14 6 O -0.51 -13.50 13.40 -58.11 -0.78 -14.28 14 7 S -0.01 -0.29 22.93 -56.49 -1.30 -1.59 14 8 C 0.45 23.81 7.45 129.89 0.97 24.78 14 9 O -0.49 -29.26 15.33 -4.38 -0.07 -29.33 14 10 N -0.35 -17.69 2.65 -469.51 -1.24 -18.93 14 11 C -0.41 -20.29 8.32 84.00 0.70 -19.60 14 12 H 0.13 5.76 7.37 -2.91 -0.02 5.74 14 13 C 0.02 1.01 4.60 84.92 0.39 1.40 14 14 N -0.85 -47.69 11.34 21.65 0.25 -47.45 14 15 Si 1.00 39.68 29.60 68.60 2.03 41.71 14 16 H -0.25 -9.09 7.11 99.48 0.71 -8.38 14 17 H -0.29 -11.63 7.11 99.48 0.71 -10.92 14 18 H -0.25 -9.57 7.11 99.48 0.71 -8.86 14 19 H 0.10 2.99 8.14 -2.39 -0.02 2.97 14 20 H 0.10 3.41 6.01 -2.39 -0.01 3.39 14 21 H 0.08 2.90 7.07 -2.39 -0.02 2.88 14 22 H 0.43 6.21 9.11 -74.05 -0.67 5.54 14 23 H 0.28 14.89 8.31 -92.71 -0.77 14.12 14 Total: -1.00 -66.14 228.48 3.49 -62.65 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 0.60 Total: 6.48 kcal Atomic # 6 Polarization: 15.74 SS G_CDS: 3.70 Total: 19.45 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -1.00 Total: -66.38 kcal Atomic # 8 Polarization: -61.77 SS G_CDS: -0.55 Total: -62.32 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Atomic # 16 Polarization: -0.29 SS G_CDS: -1.30 Total: -1.59 kcal Total: -66.14 3.49 -62.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062466555.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.774 kcal (2) G-P(sol) polarization free energy of solvation -66.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds