Wall clock time and date at job start Mon Mar 30 2020 03:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00030 * 2 1 4 4 H 1.48506 * 109.47064 * 240.00155 * 3 2 1 5 5 H 1.48506 * 109.47000 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47398 * 120.00106 * 3 2 1 7 7 C 1.37877 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00117 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99851 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47087 * 300.00203 * 9 7 2 11 11 N 1.46905 * 109.47121 * 60.00006 * 9 7 2 12 12 C 1.50698 * 109.47079 * 179.97438 * 9 7 2 13 13 C 1.38451 * 120.02279 * 284.72465 * 12 9 7 14 14 F 1.35096 * 120.01840 * 359.97438 * 13 12 9 15 15 C 1.38451 * 119.96142 * 179.74135 * 13 12 9 16 16 C 1.38226 * 120.00026 * 0.53769 * 15 13 12 17 17 C 1.38202 * 120.04022 * 359.71774 * 16 15 13 18 18 C 1.38298 * 120.01779 * 105.00203 * 12 9 7 19 19 Cl 1.73598 * 119.99947 * 359.97438 * 18 12 9 20 20 H 0.97003 * 119.99846 * 0.02562 * 1 2 3 21 21 H 1.00901 * 110.99869 * 60.00289 * 11 9 7 22 22 H 1.00896 * 110.99543 * 183.95412 * 11 9 7 23 23 H 1.08004 * 120.00148 * 180.25269 * 15 13 12 24 24 H 1.08003 * 119.97891 * 179.74855 * 16 15 13 25 25 H 1.07995 * 119.98122 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8920 11 7 0.4060 -2.5778 -1.1974 12 6 2.2304 -3.6445 0.0015 13 6 2.9113 -3.9736 -1.1583 14 9 2.6977 -3.2683 -2.2906 15 6 3.8147 -5.0227 -1.1557 16 6 4.0282 -5.7481 0.0014 17 6 3.3447 -5.4230 1.1577 18 6 2.4453 -4.3713 1.1583 19 17 1.5873 -3.9638 2.6114 20 1 -0.4850 0.8401 -0.0004 21 1 0.9637 -2.5270 -2.0367 22 1 -0.1578 -3.4144 -1.1880 23 1 4.3492 -5.2773 -2.0590 24 1 4.7300 -6.5690 0.0019 25 1 3.5126 -5.9901 2.0613 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071507759.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:29 Heat of formation + Delta-G solvation = -23.721213 kcal Electronic energy + Delta-G solvation = -13843.004619 eV Core-core repulsion = 11182.844881 eV Total energy + Delta-G solvation = -2660.159738 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.41751 -38.78299 -35.90624 -34.62649 -31.64738 -30.06481 -29.39956 -25.93903 -23.08742 -22.34826 -20.42591 -17.26995 -16.73767 -15.90919 -15.46073 -15.04424 -14.50186 -14.23196 -13.88874 -13.42313 -12.86206 -12.79452 -12.20490 -11.76690 -11.59386 -10.94262 -10.89732 -10.73226 -10.69604 -10.33267 -9.86436 -9.21238 -8.39076 -8.32872 -8.14914 -7.07831 -5.85244 -3.99893 1.38229 1.55858 2.60030 3.37868 3.41824 3.44651 3.85192 4.51350 4.70734 5.05172 5.24267 5.32202 5.43149 5.64423 5.96769 6.25351 6.32722 6.43691 6.51119 6.58660 7.18044 7.45765 7.90797 8.16417 8.63409 9.04048 9.14393 9.67500 11.19412 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.026821 B = 0.011212 C = 0.009459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.703053 B = 2496.650920 C = 2959.545260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.087 3.913 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.050 0.950 9 C 0.251 3.749 10 H 0.067 0.933 11 N -0.815 5.815 12 C -0.103 4.103 13 C 0.108 3.892 14 F -0.125 7.125 15 C -0.157 4.157 16 C -0.107 4.107 17 C -0.127 4.127 18 C -0.014 4.014 19 Cl -0.057 7.057 20 H 0.257 0.743 21 H 0.327 0.673 22 H 0.296 0.704 23 H 0.131 0.869 24 H 0.132 0.868 25 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.715 -10.756 0.828 12.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.121 4.121 3 Si 0.712 3.288 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.567 4.567 8 H 0.069 0.931 9 C 0.141 3.859 10 H 0.085 0.915 11 N -0.344 5.344 12 C -0.108 4.108 13 C 0.088 3.912 14 F -0.103 7.103 15 C -0.176 4.176 16 C -0.126 4.126 17 C -0.146 4.146 18 C -0.041 4.041 19 Cl -0.028 7.028 20 H 0.067 0.933 21 H 0.143 0.857 22 H 0.106 0.894 23 H 0.149 0.851 24 H 0.149 0.851 25 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.089 -9.867 1.158 11.162 hybrid contribution 1.050 0.182 -0.315 1.111 sum 6.138 -9.685 0.844 11.498 Atomic orbital electron populations 1.70091 1.05630 1.25834 1.46348 1.24887 0.94648 0.98420 0.94096 0.86809 0.79781 0.83619 0.78573 1.20304 1.21232 1.20304 1.20655 0.91936 0.89228 1.54864 0.93132 1.18436 0.87389 0.87818 0.92291 0.91516 1.59238 1.28376 1.41687 1.05072 1.21911 0.99614 0.99082 0.90144 1.17384 0.98285 0.92621 0.82908 1.91380 1.93180 1.77409 1.48330 1.21155 0.99859 0.96649 0.99964 1.20686 1.00161 1.00044 0.91705 1.21015 0.97071 0.97360 0.99150 1.20598 0.97763 0.97220 0.88537 1.98351 1.75988 1.93458 1.35001 0.93340 0.85654 0.89438 0.85101 0.85061 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.90 12.77 55.43 0.71 -24.19 15 2 C 0.09 2.46 5.39 -17.82 -0.10 2.36 15 3 Si 0.88 21.75 29.54 -169.99 -5.02 16.73 15 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 15 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 7 C -0.53 -14.76 8.65 -34.44 -0.30 -15.06 15 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 15 9 C 0.25 6.29 2.57 -70.01 -0.18 6.11 15 10 H 0.07 1.80 6.37 -51.93 -0.33 1.47 15 11 N -0.81 -19.99 8.41 -6.65 -0.06 -20.05 15 12 C -0.10 -2.19 4.88 -104.52 -0.51 -2.70 15 13 C 0.11 2.10 7.01 -39.42 -0.28 1.82 15 14 F -0.12 -2.57 14.31 2.25 0.03 -2.54 15 15 C -0.16 -2.42 10.03 -39.51 -0.40 -2.82 15 16 C -0.11 -1.46 10.04 -39.60 -0.40 -1.85 15 17 C -0.13 -1.90 9.83 -39.54 -0.39 -2.29 15 18 C -0.01 -0.25 6.31 -39.51 -0.25 -0.50 15 19 Cl -0.06 -1.05 27.08 -51.86 -1.40 -2.46 15 20 H 0.26 7.24 8.31 -40.82 -0.34 6.91 15 21 H 0.33 7.86 6.11 -39.29 -0.24 7.62 15 22 H 0.30 6.51 9.06 -39.29 -0.36 6.16 15 23 H 0.13 1.65 8.06 -52.48 -0.42 1.23 15 24 H 0.13 1.29 8.06 -52.48 -0.42 0.87 15 25 H 0.13 1.58 8.06 -52.49 -0.42 1.16 15 LS Contribution 239.92 15.07 3.62 3.62 Total: -1.00 -30.04 239.92 -6.65 -36.69 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -1.74 Total: 7.14 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -2.79 Total: -14.94 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: 0.65 Total: -44.24 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.03 Total: -2.54 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.40 Total: -2.46 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.04 -6.65 -36.69 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071507759.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.970 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds