Wall clock time and date at job start Mon Mar 30 2020 03:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00030 * 2 1 4 4 H 1.48506 * 109.47064 * 240.00155 * 3 2 1 5 5 H 1.48506 * 109.47000 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47398 * 120.00106 * 3 2 1 7 7 C 1.37877 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00117 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99851 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47087 * 300.00203 * 9 7 2 11 11 N 1.46905 * 109.47121 * 60.00006 * 9 7 2 12 12 C 1.50698 * 109.47079 * 179.97438 * 9 7 2 13 13 C 1.38451 * 120.02279 * 284.72465 * 12 9 7 14 14 F 1.35096 * 120.01840 * 359.97438 * 13 12 9 15 15 C 1.38451 * 119.96142 * 179.74135 * 13 12 9 16 16 C 1.38226 * 120.00026 * 0.53769 * 15 13 12 17 17 C 1.38202 * 120.04022 * 359.71774 * 16 15 13 18 18 C 1.38298 * 120.01779 * 105.00203 * 12 9 7 19 19 Cl 1.73598 * 119.99947 * 359.97438 * 18 12 9 20 20 H 0.97003 * 119.99846 * 0.02562 * 1 2 3 21 21 H 1.00901 * 110.99869 * 60.00289 * 11 9 7 22 22 H 1.00896 * 110.99543 * 183.95412 * 11 9 7 23 23 H 1.08004 * 120.00148 * 180.25269 * 15 13 12 24 24 H 1.08003 * 119.97891 * 179.74855 * 16 15 13 25 25 H 1.07995 * 119.98122 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8920 11 7 0.4060 -2.5778 -1.1974 12 6 2.2304 -3.6445 0.0015 13 6 2.9113 -3.9736 -1.1583 14 9 2.6977 -3.2683 -2.2906 15 6 3.8147 -5.0227 -1.1557 16 6 4.0282 -5.7481 0.0014 17 6 3.3447 -5.4230 1.1577 18 6 2.4453 -4.3713 1.1583 19 17 1.5873 -3.9638 2.6114 20 1 -0.4850 0.8401 -0.0004 21 1 0.9637 -2.5270 -2.0367 22 1 -0.1578 -3.4144 -1.1880 23 1 4.3492 -5.2773 -2.0590 24 1 4.7300 -6.5690 0.0019 25 1 3.5126 -5.9901 2.0613 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071507759.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:29 Heat of formation + Delta-G solvation = -43.655388 kcal Electronic energy + Delta-G solvation = -13843.869029 eV Core-core repulsion = 11182.844881 eV Total energy + Delta-G solvation = -2661.024149 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.90977 -40.13933 -37.29349 -36.44495 -33.66908 -31.38011 -30.92257 -27.97698 -24.74455 -23.67017 -22.06989 -18.82349 -18.47379 -17.52713 -16.97618 -16.56004 -16.28838 -15.76605 -15.59023 -14.90270 -14.50289 -14.41496 -13.90318 -13.30183 -13.05652 -12.78972 -12.59557 -12.34575 -12.26124 -12.05316 -11.64573 -11.18093 -10.53606 -9.67120 -9.61889 -8.93375 -7.99402 -6.20025 0.08570 0.23497 1.22323 1.40606 1.42069 1.49214 2.42855 2.58522 3.24299 3.38817 3.90082 4.01172 4.08975 4.35935 4.47663 4.67418 5.01715 5.07832 5.22446 5.26871 5.54700 5.71552 5.86398 6.12941 6.60368 7.07846 7.21019 7.50613 9.04400 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.026821 B = 0.011212 C = 0.009459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.703053 B = 2496.650920 C = 2959.545260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.037 3.963 3 Si 0.944 3.056 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.039 0.961 9 C 0.254 3.746 10 H 0.040 0.960 11 N -0.828 5.828 12 C -0.139 4.139 13 C 0.080 3.920 14 F -0.141 7.141 15 C -0.146 4.146 16 C -0.083 4.083 17 C -0.117 4.117 18 C -0.030 4.030 19 Cl -0.068 7.068 20 H 0.256 0.744 21 H 0.328 0.672 22 H 0.307 0.693 23 H 0.164 0.836 24 H 0.185 0.815 25 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.879 -12.489 0.848 14.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.167 4.167 3 Si 0.770 3.230 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.057 0.943 9 C 0.144 3.856 10 H 0.058 0.942 11 N -0.358 5.358 12 C -0.143 4.143 13 C 0.060 3.940 14 F -0.120 7.120 15 C -0.165 4.165 16 C -0.101 4.101 17 C -0.136 4.136 18 C -0.058 4.058 19 Cl -0.039 7.039 20 H 0.065 0.935 21 H 0.144 0.856 22 H 0.117 0.883 23 H 0.182 0.818 24 H 0.202 0.798 25 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.265 -11.611 1.185 13.748 hybrid contribution 0.444 0.581 -0.309 0.793 sum 7.709 -11.030 0.876 13.486 Atomic orbital electron populations 1.70215 1.06932 1.26424 1.47773 1.25625 0.95455 1.01638 0.93978 0.85861 0.78642 0.79883 0.78627 1.20057 1.20673 1.19671 1.20946 0.91565 0.91091 1.54120 0.94307 1.18030 0.87791 0.88629 0.91150 0.94223 1.59092 1.29003 1.42639 1.05079 1.21499 1.00935 0.99508 0.92364 1.17749 0.99944 0.94267 0.81992 1.91325 1.93504 1.78154 1.48994 1.21573 0.98084 0.94709 1.02098 1.21326 0.99077 0.99872 0.89848 1.21465 0.95158 0.95725 1.01206 1.20840 0.98973 0.98484 0.87483 1.98341 1.76505 1.93731 1.35326 0.93512 0.85581 0.88262 0.81850 0.79756 0.81859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.08 12.77 21.45 0.27 -52.80 15 2 C 0.04 2.13 5.39 84.65 0.46 2.58 15 3 Si 0.94 45.34 29.54 68.60 2.03 47.36 15 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 5 H -0.28 -13.15 7.11 99.48 0.71 -12.45 15 6 H -0.27 -12.65 7.11 99.48 0.71 -11.94 15 7 C -0.54 -30.86 8.65 25.60 0.22 -30.64 15 8 H 0.04 2.25 7.74 -2.91 -0.02 2.22 15 9 C 0.25 13.13 2.57 43.42 0.11 13.24 15 10 H 0.04 2.23 6.37 -2.39 -0.02 2.22 15 11 N -0.83 -41.95 8.41 -174.94 -1.47 -43.42 15 12 C -0.14 -5.91 4.88 -19.80 -0.10 -6.00 15 13 C 0.08 3.04 7.01 22.37 0.16 3.19 15 14 F -0.14 -5.86 14.31 44.97 0.64 -5.22 15 15 C -0.15 -3.94 10.03 22.32 0.22 -3.71 15 16 C -0.08 -1.80 10.04 22.26 0.22 -1.58 15 17 C -0.12 -3.05 9.83 22.30 0.22 -2.83 15 18 C -0.03 -1.10 6.31 22.32 0.14 -0.96 15 19 Cl -0.07 -2.51 27.08 -2.72 -0.07 -2.58 15 20 H 0.26 14.78 8.31 -92.71 -0.77 14.01 15 21 H 0.33 16.25 6.11 -89.69 -0.55 15.71 15 22 H 0.31 14.00 9.06 -89.70 -0.81 13.18 15 23 H 0.16 3.32 8.06 -2.91 -0.02 3.29 15 24 H 0.19 2.16 8.06 -2.91 -0.02 2.13 15 25 H 0.16 3.16 8.06 -2.91 -0.02 3.14 15 Total: -1.00 -67.08 239.92 2.94 -64.14 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -0.12 Total: 19.23 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 1.66 Total: -26.71 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -1.20 Total: -96.23 kcal Atomic # 9 Polarization: -5.86 SS G_CDS: 0.64 Total: -5.22 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 17 Polarization: -2.51 SS G_CDS: -0.07 Total: -2.58 kcal Total: -67.08 2.94 -64.14 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071507759.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.487 kcal (2) G-P(sol) polarization free energy of solvation -67.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds