Wall clock time and date at job start Mon Mar 30 2020 03:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81403 * 109.46983 * 2 1 4 4 C 1.81400 * 103.00190 * 179.97438 * 3 2 1 5 5 C 1.50694 * 109.47328 * 179.97438 * 4 3 2 6 6 N 1.29523 * 124.55756 * 89.98059 * 5 4 3 7 7 C 1.30674 * 117.62969 * 180.02562 * 6 5 4 8 8 C 1.38583 * 113.55349 * 359.97438 * 7 6 5 9 9 C 1.40044 * 126.25645 * 179.97438 * 8 7 6 10 10 H 1.08002 * 120.00005 * 359.97438 * 9 8 7 11 11 C 1.40067 * 120.00028 * 179.97438 * 9 8 7 12 12 N 1.30862 * 120.00168 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00243 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46888 * 59.99561 * 13 11 9 15 15 H 1.48492 * 109.47206 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46747 * 300.00071 * 13 11 9 17 17 S 1.70876 * 124.56581 * 270.00289 * 5 4 3 18 18 H 1.09003 * 109.46603 * 60.00291 * 1 2 3 19 19 H 1.08996 * 109.46790 * 180.02562 * 1 2 3 20 20 H 1.08996 * 109.47401 * 300.00272 * 1 2 3 21 21 H 1.08994 * 109.47671 * 240.00196 * 2 1 3 22 22 H 1.09004 * 109.47322 * 119.99520 * 2 1 3 23 23 H 1.09004 * 109.46540 * 59.99905 * 4 3 2 24 24 H 1.09001 * 109.47265 * 300.00650 * 4 3 2 25 25 H 1.08006 * 123.22690 * 179.73140 * 7 6 5 26 26 H 0.96998 * 120.00573 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9371 1.5060 0.0008 5 6 4.5963 2.8611 0.0002 6 7 4.9170 3.5225 1.0666 7 6 5.4841 4.6891 0.9085 8 6 5.6585 5.0447 -0.4195 9 6 6.2350 6.2309 -0.8905 10 1 6.5933 6.9719 -0.1912 11 6 6.3469 6.4562 -2.2684 12 7 5.9123 5.5586 -3.1156 13 14 7.1152 8.0388 -2.8967 14 1 8.5114 8.1417 -2.4017 15 1 7.1149 8.0337 -4.3816 16 1 6.3293 9.1993 -2.4060 17 16 5.0209 3.7320 -1.4073 18 1 -0.3632 0.5138 -0.8901 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3634 0.5138 0.8899 21 1 1.8934 -0.5138 -0.8899 22 1 1.8934 -0.5138 0.8900 23 1 4.2405 0.9543 -0.8890 24 1 4.2399 0.9545 0.8909 25 1 5.7844 5.3179 1.7338 26 1 5.9901 5.7144 -4.0698 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082416458.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:26 Heat of formation + Delta-G solvation = -14.239648 kcal Electronic energy + Delta-G solvation = -11210.057458 eV Core-core repulsion = 9118.565753 eV Total energy + Delta-G solvation = -2091.491704 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 229.029 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.38107 -36.20186 -33.60778 -32.61854 -30.38754 -26.34522 -24.62251 -23.68187 -20.71851 -19.47449 -17.62081 -17.27296 -16.84533 -15.74999 -15.72536 -15.38526 -14.74712 -14.32046 -14.09248 -13.71664 -13.58702 -13.17231 -13.08717 -12.79196 -12.32445 -12.25852 -12.03986 -11.49626 -11.36485 -10.84181 -9.87182 -9.76120 -9.17613 -8.91241 -8.60780 -6.60101 0.31795 0.96570 1.37418 1.44842 1.54551 1.55833 1.81584 1.92707 2.15678 2.44095 3.07715 3.86025 4.06888 4.13548 4.24919 4.53203 4.56171 4.86966 4.87670 4.94212 4.97137 5.16429 5.24339 5.70992 5.94849 6.30482 6.38458 7.72517 7.93795 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.057299 B = 0.006371 C = 0.006005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.547271 B = 4393.882791 C = 4661.476960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.081 4.081 3 S -0.328 6.328 4 C 0.052 3.948 5 C -0.192 4.192 6 N -0.439 5.439 7 C -0.200 4.200 8 C -0.031 4.031 9 C -0.381 4.381 10 H 0.111 0.889 11 C 0.010 3.990 12 N -0.789 5.789 13 Si 1.017 2.983 14 H -0.253 1.253 15 H -0.260 1.260 16 H -0.255 1.255 17 S 0.130 5.870 18 H 0.058 0.942 19 H 0.097 0.903 20 H 0.056 0.944 21 H 0.090 0.910 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.144 0.856 26 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.209 -4.470 -2.681 6.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.229 4.229 3 S -0.102 6.102 4 C -0.098 4.098 5 C -0.460 4.460 6 N -0.152 5.152 7 C -0.356 4.356 8 C -0.155 4.155 9 C -0.419 4.419 10 H 0.129 0.871 11 C -0.210 4.210 12 N -0.415 5.415 13 Si 0.835 3.165 14 H -0.176 1.176 15 H -0.183 1.183 16 H -0.179 1.179 17 S 0.380 5.620 18 H 0.077 0.923 19 H 0.116 0.884 20 H 0.075 0.925 21 H 0.108 0.892 22 H 0.105 0.895 23 H 0.109 0.891 24 H 0.101 0.899 25 H 0.162 0.838 26 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.164 -4.301 -3.416 6.893 hybrid contribution 1.301 0.083 0.769 1.513 sum -2.864 -4.219 -2.646 5.745 Atomic orbital electron populations 1.21502 0.91070 1.03659 1.02567 1.23379 1.00942 0.93110 1.05474 1.87442 1.08194 1.16442 1.98131 1.21132 0.90826 0.93584 1.04239 1.25480 1.21226 1.04546 0.94728 1.65130 1.09123 1.06930 1.34052 1.21591 1.21648 0.97695 0.94676 1.23741 0.98219 0.98413 0.95161 1.19686 1.28137 1.00210 0.93834 0.87076 1.27355 0.94338 1.03293 0.96051 1.68992 1.31225 1.34926 1.06331 0.84665 0.79256 0.74669 0.77916 1.17630 1.18345 1.17861 1.83772 1.58982 1.11144 1.08086 0.92312 0.88436 0.92500 0.89170 0.89491 0.89136 0.89890 0.83844 0.87389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 9.92 71.98 0.71 -2.01 15 2 C -0.08 -2.08 6.66 71.98 0.48 -1.60 15 3 S -0.33 -12.63 21.72 -56.49 -1.23 -13.86 15 4 C 0.05 2.16 6.51 71.23 0.46 2.62 15 5 C -0.19 -9.75 6.62 88.45 0.59 -9.16 15 6 N -0.44 -24.21 10.48 -188.23 -1.97 -26.18 15 7 C -0.20 -11.05 11.46 84.95 0.97 -10.08 15 8 C -0.03 -1.70 6.25 22.79 0.14 -1.56 15 9 C -0.38 -19.05 9.33 23.15 0.22 -18.83 15 10 H 0.11 5.11 7.85 -2.91 -0.02 5.09 15 11 C 0.01 0.45 5.50 85.28 0.47 0.92 15 12 N -0.79 -36.80 10.76 21.86 0.24 -36.57 15 13 Si 1.02 33.01 29.56 68.60 2.03 35.03 15 14 H -0.25 -7.90 7.11 99.48 0.71 -7.20 15 15 H -0.26 -7.84 7.11 99.48 0.71 -7.13 15 16 H -0.25 -8.07 7.11 99.48 0.71 -7.36 15 17 S 0.13 6.71 20.23 -56.49 -1.14 5.57 15 18 H 0.06 1.29 8.14 -2.39 -0.02 1.27 15 19 H 0.10 1.45 8.14 -2.39 -0.02 1.43 15 20 H 0.06 1.27 8.14 -2.39 -0.02 1.25 15 21 H 0.09 2.06 8.14 -2.39 -0.02 2.04 15 22 H 0.09 2.04 8.14 -2.39 -0.02 2.02 15 23 H 0.09 3.36 8.14 -2.39 -0.02 3.34 15 24 H 0.08 3.26 8.14 -2.39 -0.02 3.24 15 25 H 0.14 7.42 8.06 -2.91 -0.02 7.39 15 26 H 0.31 12.82 8.30 -92.71 -0.77 12.05 15 Total: -1.00 -61.41 257.51 3.13 -58.27 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 1.17 Total: 17.42 kcal Atomic # 6 Polarization: -43.74 SS G_CDS: 4.04 Total: -39.70 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -1.74 Total: -62.74 kcal Atomic # 14 Polarization: 33.01 SS G_CDS: 2.03 Total: 35.03 kcal Atomic # 16 Polarization: -5.92 SS G_CDS: -2.37 Total: -8.29 kcal Total: -61.41 3.13 -58.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082416458.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.035 kcal (2) G-P(sol) polarization free energy of solvation -61.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds