Wall clock time and date at job start Mon Mar 30 2020 02:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47014 * 111.00220 * 2 1 4 4 C 1.53101 * 109.25785 * 177.60889 * 3 2 1 5 5 O 1.43018 * 109.25979 * 56.84975 * 4 3 2 6 6 C 1.43015 * 113.73560 * 301.32784 * 5 4 3 7 7 H 1.09001 * 109.50419 * 298.69565 * 6 5 4 8 8 C 1.52997 * 109.50598 * 178.60513 * 6 5 4 9 9 N 1.46904 * 109.46950 * 65.08976 * 8 6 5 10 10 C 1.46899 * 111.00029 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47254 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47466 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00362 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99850 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47052 * 89.99717 * 16 14 12 18 18 H 1.48495 * 109.47307 * 209.99656 * 16 14 12 19 19 H 1.48500 * 109.47143 * 330.00164 * 16 14 12 20 20 C 1.47020 * 110.99720 * 236.31751 * 2 1 3 21 21 H 1.09007 * 109.47079 * 63.95696 * 1 2 3 22 22 H 1.09001 * 109.47184 * 183.95246 * 1 2 3 23 23 H 1.08997 * 109.47349 * 303.95592 * 1 2 3 24 24 H 1.08998 * 109.50679 * 57.66767 * 3 2 1 25 25 H 1.09008 * 109.50265 * 297.54311 * 3 2 1 26 26 H 1.08996 * 109.50236 * 296.90995 * 4 3 2 27 27 H 1.09006 * 109.53760 * 176.80257 * 4 3 2 28 28 H 1.08995 * 109.47319 * 305.08905 * 8 6 5 29 29 H 1.09003 * 109.47435 * 185.08230 * 8 6 5 30 30 H 1.00908 * 110.99583 * 303.94989 * 9 8 6 31 31 H 1.09002 * 109.47043 * 299.99792 * 10 9 8 32 32 H 1.09001 * 109.47354 * 59.99854 * 10 9 8 33 33 H 1.09002 * 109.47153 * 300.00004 * 11 10 9 34 34 H 1.08998 * 109.47533 * 59.99633 * 11 10 9 35 35 H 0.96994 * 119.99814 * 180.02562 * 15 14 12 36 36 H 1.09006 * 109.47215 * 62.44314 * 20 2 1 37 37 H 1.08994 * 109.54856 * 302.30432 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5250 1.3263 0.0603 5 8 4.0175 0.5573 -1.0404 6 6 3.5249 -0.7850 -1.0709 7 1 3.8391 -1.3086 -0.1680 8 6 4.0824 -1.5059 -2.2999 9 7 5.5406 -1.6321 -2.1739 10 6 6.1120 -2.3206 -3.3390 11 6 7.6288 -2.4323 -3.1721 12 6 8.2149 -3.1391 -4.3670 13 1 7.5702 -3.4746 -5.1659 14 6 9.5744 -3.3565 -4.4411 15 7 10.0861 -3.9728 -5.4842 16 14 10.6899 -2.7742 -3.0604 17 1 10.8241 -3.8500 -2.0454 18 1 12.0287 -2.4439 -3.6115 19 1 10.1037 -1.5661 -2.4265 20 6 1.9957 -0.7612 -1.1422 21 1 -0.3633 0.4512 -0.9234 22 1 -0.3633 -1.0252 0.0708 23 1 -0.3634 0.5740 0.8524 24 1 1.6133 1.9092 0.8681 25 1 1.6827 1.8825 -0.9111 26 1 3.8384 0.8643 0.9964 27 1 3.9228 2.3396 0.0033 28 1 3.8434 -0.9337 -3.1963 29 1 3.6368 -2.4980 -2.3725 30 1 5.9715 -0.7295 -2.0404 31 1 5.6805 -3.3183 -3.4192 32 1 5.8871 -1.7537 -4.2424 33 1 8.0600 -1.4344 -3.0921 34 1 7.8542 -2.9989 -2.2687 35 1 11.0424 -4.1261 -5.5360 36 1 1.6821 -0.2857 -2.0715 37 1 1.6140 -1.7815 -1.1077 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082463122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:57 Heat of formation + Delta-G solvation = -45.823793 kcal Electronic energy + Delta-G solvation = -15934.071255 eV Core-core repulsion = 13325.089068 eV Total energy + Delta-G solvation = -2608.982186 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.80901 -36.33748 -35.52579 -33.11540 -31.78549 -29.71441 -28.88249 -25.97259 -24.35462 -23.47272 -21.70364 -20.68135 -20.14824 -16.76354 -16.57703 -16.39674 -15.74039 -15.31330 -15.09395 -14.50413 -14.20585 -14.02373 -13.48506 -13.19430 -12.74939 -12.53513 -12.52000 -12.19787 -11.97141 -11.50914 -11.28005 -11.17568 -10.97119 -10.68292 -10.09611 -9.80910 -9.73760 -9.59139 -9.18035 -8.70206 -8.49310 -7.88458 -6.00385 -3.98484 3.37092 3.43505 3.49652 3.50218 3.69390 4.44496 4.50725 4.70022 4.75232 4.96750 5.02310 5.06424 5.18460 5.24078 5.29257 5.34472 5.42706 5.48893 5.51878 5.60735 5.66156 5.89823 6.04166 6.24514 6.34324 6.62175 6.62724 6.83185 7.11771 7.19385 7.45163 7.65270 7.81731 7.98653 8.57581 9.03691 9.62280 11.12984 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.057656 B = 0.004409 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.519006 B = 6349.737014 C = 6681.195759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.017 3.983 4 C 0.065 3.935 5 O -0.379 6.379 6 C 0.095 3.905 7 H 0.077 0.923 8 C 0.068 3.932 9 N -0.692 5.692 10 C 0.073 3.927 11 C -0.010 4.010 12 C -0.520 4.520 13 H 0.070 0.930 14 C 0.066 3.934 15 N -0.905 5.905 16 Si 0.883 3.117 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.265 1.265 20 C 0.024 3.976 21 H 0.026 0.974 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.032 0.968 29 H 0.083 0.917 30 H 0.343 0.657 31 H 0.064 0.936 32 H 0.022 0.978 33 H 0.014 0.986 34 H 0.021 0.979 35 H 0.263 0.737 36 H 0.042 0.958 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.385 10.278 11.891 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.112 4.112 4 C -0.012 4.012 5 O -0.298 6.298 6 C 0.037 3.963 7 H 0.095 0.905 8 C -0.062 4.062 9 N -0.323 5.323 10 C -0.055 4.055 11 C -0.048 4.048 12 C -0.559 4.559 13 H 0.089 0.911 14 C -0.135 4.135 15 N -0.544 5.544 16 Si 0.710 3.290 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.189 1.189 20 C -0.105 4.105 21 H 0.044 0.956 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.102 0.898 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.161 0.839 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.970 9.482 12.476 23.843 hybrid contribution 0.014 1.243 -0.623 1.390 sum -17.956 10.725 11.854 24.041 Atomic orbital electron populations 1.22381 0.86938 1.02492 1.00520 1.62179 1.08140 1.13632 1.42807 1.22832 0.97078 0.89770 1.01492 1.22607 0.91635 0.96511 0.90485 1.88001 1.69981 1.23783 1.48046 1.22279 0.90695 0.83250 1.00089 0.90499 1.21884 0.90774 0.98983 0.94553 1.60598 1.02235 1.26339 1.43148 1.21960 0.97450 0.97332 0.88775 1.19543 0.90727 0.96857 0.97666 1.21084 0.93017 1.37108 1.04686 0.91137 1.25012 0.98154 0.94608 0.95713 1.69919 1.12575 1.42542 1.29395 0.86724 0.79754 0.79953 0.82540 1.20236 1.21533 1.18913 1.22802 0.96408 0.99421 0.91820 0.95566 0.91070 0.91268 0.89778 0.94051 0.92213 0.88519 0.95010 0.89864 0.83886 0.91798 0.96013 0.96788 0.96068 0.92764 0.93937 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.61 60.06 0.58 0.77 16 2 N -0.54 -5.51 4.98 -242.59 -1.21 -6.72 16 3 C 0.02 0.15 5.66 -3.71 -0.02 0.13 16 4 C 0.06 0.67 7.01 37.21 0.26 0.93 16 5 O -0.38 -5.20 9.99 -35.23 -0.35 -5.55 16 6 C 0.10 1.23 3.04 -26.68 -0.08 1.15 16 7 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 8 C 0.07 1.00 5.39 -3.82 -0.02 0.98 16 9 N -0.69 -12.43 6.50 -113.78 -0.74 -13.17 16 10 C 0.07 1.53 5.62 -3.83 -0.02 1.51 16 11 C -0.01 -0.25 4.30 -27.89 -0.12 -0.37 16 12 C -0.52 -15.26 9.66 -34.44 -0.33 -15.59 16 13 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.91 -28.45 13.96 55.43 0.77 -27.68 16 16 Si 0.88 22.37 27.47 -169.99 -4.67 17.70 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 20 C 0.02 0.26 4.95 -3.71 -0.02 0.24 16 21 H 0.03 0.20 8.14 -51.92 -0.42 -0.22 16 22 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.40 8.14 -51.92 -0.42 -0.02 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.34 6.20 8.29 -39.29 -0.33 5.87 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 34 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 297.72 15.07 4.49 4.49 Total: -1.00 -31.89 297.72 -8.18 -40.07 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.60 Total: -0.78 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 0.12 Total: -8.36 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -1.18 Total: -47.56 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.35 Total: -5.55 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.67 Total: 17.70 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.89 -8.18 -40.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082463122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.750 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds