Wall clock time and date at job start Mon Mar 30 2020 02:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.47014 * 111.00220 * 2 1 4 4 C 1.53101 * 109.25785 * 177.60889 * 3 2 1 5 5 O 1.43018 * 109.25979 * 56.84975 * 4 3 2 6 6 C 1.43015 * 113.73560 * 301.32784 * 5 4 3 7 7 H 1.09001 * 109.50419 * 298.69565 * 6 5 4 8 8 C 1.52997 * 109.50598 * 178.60513 * 6 5 4 9 9 N 1.46904 * 109.46950 * 65.08976 * 8 6 5 10 10 C 1.46899 * 111.00029 * 180.02562 * 9 8 6 11 11 C 1.52997 * 109.47254 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47466 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00362 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99850 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47052 * 89.99717 * 16 14 12 18 18 H 1.48495 * 109.47307 * 209.99656 * 16 14 12 19 19 H 1.48500 * 109.47143 * 330.00164 * 16 14 12 20 20 C 1.47020 * 110.99720 * 236.31751 * 2 1 3 21 21 H 1.09007 * 109.47079 * 63.95696 * 1 2 3 22 22 H 1.09001 * 109.47184 * 183.95246 * 1 2 3 23 23 H 1.08997 * 109.47349 * 303.95592 * 1 2 3 24 24 H 1.08998 * 109.50679 * 57.66767 * 3 2 1 25 25 H 1.09008 * 109.50265 * 297.54311 * 3 2 1 26 26 H 1.08996 * 109.50236 * 296.90995 * 4 3 2 27 27 H 1.09006 * 109.53760 * 176.80257 * 4 3 2 28 28 H 1.08995 * 109.47319 * 305.08905 * 8 6 5 29 29 H 1.09003 * 109.47435 * 185.08230 * 8 6 5 30 30 H 1.00908 * 110.99583 * 303.94989 * 9 8 6 31 31 H 1.09002 * 109.47043 * 299.99792 * 10 9 8 32 32 H 1.09001 * 109.47354 * 59.99854 * 10 9 8 33 33 H 1.09002 * 109.47153 * 300.00004 * 11 10 9 34 34 H 1.08998 * 109.47533 * 59.99633 * 11 10 9 35 35 H 0.96994 * 119.99814 * 180.02562 * 15 14 12 36 36 H 1.09006 * 109.47215 * 62.44314 * 20 2 1 37 37 H 1.08994 * 109.54856 * 302.30432 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5250 1.3263 0.0603 5 8 4.0175 0.5573 -1.0404 6 6 3.5249 -0.7850 -1.0709 7 1 3.8391 -1.3086 -0.1680 8 6 4.0824 -1.5059 -2.2999 9 7 5.5406 -1.6321 -2.1739 10 6 6.1120 -2.3206 -3.3390 11 6 7.6288 -2.4323 -3.1721 12 6 8.2149 -3.1391 -4.3670 13 1 7.5702 -3.4746 -5.1659 14 6 9.5744 -3.3565 -4.4411 15 7 10.0861 -3.9728 -5.4842 16 14 10.6899 -2.7742 -3.0604 17 1 10.8241 -3.8500 -2.0454 18 1 12.0287 -2.4439 -3.6115 19 1 10.1037 -1.5661 -2.4265 20 6 1.9957 -0.7612 -1.1422 21 1 -0.3633 0.4512 -0.9234 22 1 -0.3633 -1.0252 0.0708 23 1 -0.3634 0.5740 0.8524 24 1 1.6133 1.9092 0.8681 25 1 1.6827 1.8825 -0.9111 26 1 3.8384 0.8643 0.9964 27 1 3.9228 2.3396 0.0033 28 1 3.8434 -0.9337 -3.1963 29 1 3.6368 -2.4980 -2.3725 30 1 5.9715 -0.7295 -2.0404 31 1 5.6805 -3.3183 -3.4192 32 1 5.8871 -1.7537 -4.2424 33 1 8.0600 -1.4344 -3.0921 34 1 7.8542 -2.9989 -2.2687 35 1 11.0424 -4.1261 -5.5360 36 1 1.6821 -0.2857 -2.0715 37 1 1.6140 -1.7815 -1.1077 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082463122.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:57 Heat of formation + Delta-G solvation = -70.902186 kcal Electronic energy + Delta-G solvation = -15935.158736 eV Core-core repulsion = 13325.089068 eV Total energy + Delta-G solvation = -2610.069667 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.69463 -37.63935 -36.56252 -35.06653 -33.25823 -31.23330 -29.79523 -27.32365 -25.28691 -24.92334 -22.81574 -22.25982 -21.33004 -18.95325 -17.62540 -17.26529 -16.89600 -16.29901 -16.21595 -15.89081 -15.68591 -15.14390 -14.75103 -14.69722 -14.45566 -13.92009 -13.39003 -13.26614 -12.92751 -12.89398 -12.82263 -12.35131 -12.25409 -11.97702 -11.78751 -11.66339 -11.41651 -11.36770 -10.76767 -10.61638 -9.45190 -9.35018 -8.29916 -6.34563 1.38252 1.39394 1.52671 2.37484 2.70827 2.81506 3.05589 3.28928 3.93392 3.95477 3.99577 4.10780 4.23012 4.32670 4.43712 4.46699 4.54202 4.60781 4.62124 4.66954 4.68745 4.83054 4.93980 4.96098 4.97677 5.04483 5.28092 5.48715 5.62367 5.86865 5.94521 6.10066 6.23280 6.25336 6.49160 6.73604 7.30463 8.86737 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.057656 B = 0.004409 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.519006 B = 6349.737014 C = 6681.195759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.555 5.555 3 C 0.019 3.981 4 C 0.059 3.941 5 O -0.403 6.403 6 C 0.102 3.898 7 H 0.068 0.932 8 C 0.069 3.931 9 N -0.691 5.691 10 C 0.086 3.914 11 C -0.004 4.004 12 C -0.535 4.535 13 H 0.033 0.967 14 C 0.005 3.995 15 N -0.951 5.951 16 Si 0.955 3.045 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.249 1.249 20 C 0.030 3.970 21 H 0.027 0.973 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.105 0.895 25 H 0.037 0.963 26 H 0.058 0.942 27 H 0.114 0.886 28 H 0.030 0.970 29 H 0.094 0.906 30 H 0.344 0.656 31 H 0.061 0.939 32 H 0.015 0.985 33 H 0.017 0.983 34 H 0.023 0.977 35 H 0.267 0.733 36 H 0.038 0.962 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.167 11.433 13.944 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.280 5.280 3 C -0.109 4.109 4 C -0.018 4.018 5 O -0.323 6.323 6 C 0.043 3.957 7 H 0.086 0.914 8 C -0.061 4.061 9 N -0.322 5.322 10 C -0.043 4.043 11 C -0.042 4.042 12 C -0.573 4.573 13 H 0.051 0.949 14 C -0.192 4.192 15 N -0.591 5.591 16 Si 0.778 3.222 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.173 1.173 20 C -0.099 4.099 21 H 0.046 0.954 22 H 0.095 0.905 23 H 0.101 0.899 24 H 0.124 0.876 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.131 0.869 28 H 0.048 0.952 29 H 0.112 0.888 30 H 0.161 0.839 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.035 0.965 34 H 0.041 0.959 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.786 10.648 14.541 26.033 hybrid contribution 0.187 0.881 -1.306 1.586 sum -18.599 11.529 13.236 25.573 Atomic orbital electron populations 1.22441 0.85431 1.03234 1.01194 1.62203 1.09553 1.14001 1.42240 1.22846 0.96202 0.89597 1.02266 1.22822 0.92632 0.96870 0.89449 1.87960 1.70777 1.24078 1.49440 1.22123 0.92055 0.82986 0.98492 0.91420 1.21969 0.88586 1.00003 0.95536 1.60524 1.04200 1.26256 1.41250 1.21654 0.95231 0.97653 0.89778 1.19433 0.93142 0.96143 0.95509 1.21410 0.93122 1.37446 1.05337 0.94885 1.26006 0.99968 0.94644 0.98552 1.70063 1.13295 1.44018 1.31743 0.85587 0.77442 0.80122 0.79035 1.19110 1.20812 1.17262 1.22699 0.94783 1.00294 0.92120 0.95441 0.90480 0.89892 0.87649 0.94441 0.92319 0.86853 0.95190 0.88766 0.83870 0.92046 0.96692 0.96470 0.95899 0.92390 0.94331 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.61 127.69 1.23 1.55 16 2 N -0.55 -10.04 4.98 -921.40 -4.59 -14.63 16 3 C 0.02 0.31 5.66 86.32 0.49 0.80 16 4 C 0.06 1.11 7.01 72.02 0.50 1.62 16 5 O -0.40 -10.52 9.99 -148.98 -1.49 -12.01 16 6 C 0.10 2.50 3.04 30.63 0.09 2.59 16 7 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 8 C 0.07 1.93 5.39 86.30 0.47 2.39 16 9 N -0.69 -24.06 6.50 -513.89 -3.34 -27.41 16 10 C 0.09 3.57 5.62 86.30 0.49 4.06 16 11 C 0.00 -0.22 4.30 29.85 0.13 -0.09 16 12 C -0.53 -31.87 9.66 25.60 0.25 -31.62 16 13 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 14 C 0.01 0.31 5.47 84.65 0.46 0.77 16 15 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 16 Si 0.95 45.67 27.47 68.60 1.88 47.56 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 20 C 0.03 0.60 4.95 86.31 0.43 1.02 16 21 H 0.03 0.36 8.14 -2.38 -0.02 0.34 16 22 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.04 0.64 8.14 -2.38 -0.02 0.63 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.11 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.34 11.99 8.29 -89.69 -0.74 11.25 16 31 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 34 H 0.02 1.11 7.57 -2.39 -0.02 1.09 16 35 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -68.12 297.72 -2.49 -70.61 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.22 Total: 13.25 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 4.53 Total: -16.91 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -7.63 Total: -102.50 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -1.49 Total: -12.01 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.88 Total: 47.56 kcal Total: -68.12 -2.49 -70.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082463122.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.296 kcal (2) G-P(sol) polarization free energy of solvation -68.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds