Wall clock time and date at job start Mon Mar 30 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.46810 * 2 1 4 4 C 1.36938 * 120.00324 * 83.33000 * 3 2 1 5 5 H 1.08000 * 119.99994 * 39.87851 * 4 3 2 6 6 C 1.38806 * 120.00004 * 219.60758 * 4 3 2 7 7 N 1.31616 * 120.00146 * 211.51699 * 6 4 3 8 8 Si 1.86804 * 120.00042 * 31.51984 * 6 4 3 9 9 H 1.48499 * 109.47346 * 95.04687 * 8 6 4 10 10 H 1.48500 * 109.47084 * 215.04965 * 8 6 4 11 11 H 1.48499 * 109.46917 * 335.04653 * 8 6 4 12 12 C 1.46506 * 119.99938 * 263.32479 * 3 2 1 13 13 C 1.53003 * 109.47294 * 275.96575 * 12 3 2 14 14 H 1.08996 * 109.50218 * 305.00186 * 13 12 3 15 15 C 1.53094 * 109.50554 * 184.91158 * 13 12 3 16 16 N 1.47018 * 109.25569 * 183.21533 * 15 13 12 17 17 C 1.46903 * 111.00003 * 182.39327 * 16 15 13 18 18 C 1.47012 * 110.75159 * 58.61802 * 16 15 13 19 19 C 1.53101 * 109.25780 * 301.38370 * 18 16 15 20 20 O 1.43013 * 109.29588 * 56.82818 * 19 18 16 21 21 H 1.08997 * 109.46889 * 301.95654 * 1 2 3 22 22 H 1.08997 * 109.47446 * 61.96325 * 1 2 3 23 23 H 1.09003 * 109.46703 * 181.95753 * 1 2 3 24 24 H 1.09004 * 109.47027 * 239.99733 * 2 1 3 25 25 H 1.09003 * 109.46873 * 119.99795 * 2 1 3 26 26 H 0.96998 * 120.00572 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.47068 * 35.96307 * 12 3 2 28 28 H 1.08997 * 109.46891 * 155.96311 * 12 3 2 29 29 H 1.08996 * 109.50833 * 303.15099 * 15 13 12 30 30 H 1.09002 * 109.50356 * 63.28507 * 15 13 12 31 31 H 1.08998 * 109.46852 * 60.00318 * 17 16 15 32 32 H 1.08997 * 109.47206 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.46882 * 300.00198 * 17 16 15 34 34 H 1.09003 * 109.50773 * 61.31584 * 18 16 15 35 35 H 1.09000 * 109.50664 * 181.40745 * 18 16 15 36 36 H 1.09000 * 109.50746 * 176.78630 * 19 18 16 37 37 H 1.09005 * 109.50813 * 296.91334 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1166 2.0727 1.1778 5 1 2.4705 1.5747 2.0685 6 6 1.7668 3.4151 1.2258 7 7 2.3833 4.2264 2.0589 8 14 0.4211 4.0702 0.1080 9 1 -0.8716 4.0735 0.8389 10 1 0.7563 5.4548 -0.3112 11 1 0.3089 3.2030 -1.0922 12 6 2.4015 2.0227 -1.2602 13 6 3.8433 1.6458 -1.6066 14 1 4.4967 1.9018 -0.7726 15 6 4.2856 2.4113 -2.8565 16 7 5.6433 1.9880 -3.2292 17 6 6.1287 2.7413 -4.3932 18 6 5.6864 0.5406 -3.4830 19 6 5.2300 -0.2062 -2.2268 20 8 3.9217 0.2405 -1.8607 21 1 -0.3633 0.5439 0.8719 22 1 -0.3634 0.4830 -0.9070 23 1 -0.3633 -1.0271 0.0351 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.1391 5.1646 2.0922 27 1 1.7368 1.6862 -2.0559 28 1 2.3240 3.1048 -1.1552 29 1 3.5997 2.1972 -3.6761 30 1 4.2823 3.4812 -2.6481 31 1 6.1471 3.8049 -4.1557 32 1 7.1347 2.4081 -4.6479 33 1 5.4641 2.5695 -5.2400 34 1 5.0228 0.2966 -4.3127 35 1 6.7054 0.2450 -3.7328 36 1 5.2057 -1.2771 -2.4286 37 1 5.9243 -0.0046 -1.4111 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082491923.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:41 Heat of formation + Delta-G solvation = -15.448756 kcal Electronic energy + Delta-G solvation = -17141.494373 eV Core-core repulsion = 14533.829347 eV Total energy + Delta-G solvation = -2607.665026 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.26250 -36.16254 -35.10769 -31.87180 -31.68078 -29.28831 -28.42184 -25.89673 -23.99952 -23.54974 -22.13066 -20.04027 -19.89209 -16.85398 -16.01770 -15.72925 -15.11341 -14.86194 -14.60101 -14.48648 -13.80473 -13.42968 -13.27135 -12.89823 -12.34310 -12.18833 -11.96784 -11.83833 -11.62735 -11.27280 -11.04409 -10.84908 -10.64786 -10.53807 -10.15243 -9.98145 -9.73171 -9.51300 -9.08423 -8.40854 -8.25450 -6.68347 -6.02415 -3.33100 3.37415 3.50531 3.55932 3.96128 4.29572 4.57921 4.94011 5.11060 5.17022 5.30738 5.38394 5.44066 5.49679 5.65299 5.68460 5.82969 5.84367 5.92736 6.06741 6.13311 6.21347 6.25058 6.42756 6.50381 6.64698 6.76311 6.87478 6.99815 7.06971 7.08613 7.23586 7.77539 8.10115 8.48754 9.08467 9.77695 10.25746 11.13884 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.026899 B = 0.009560 C = 0.008124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.685026 B = 2928.264227 C = 3445.828435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.147 3.853 3 N -0.596 5.596 4 C -0.271 4.271 5 H 0.074 0.926 6 C 0.043 3.957 7 N -0.885 5.885 8 Si 0.848 3.152 9 H -0.290 1.290 10 H -0.295 1.295 11 H -0.261 1.261 12 C 0.164 3.836 13 C 0.074 3.926 14 H 0.074 0.926 15 C 0.023 3.977 16 N -0.541 5.541 17 C 0.026 3.974 18 C 0.020 3.980 19 C 0.062 3.938 20 O -0.371 6.371 21 H 0.054 0.946 22 H 0.038 0.962 23 H 0.037 0.963 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.262 0.738 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 -5.799 -11.945 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.021 3.979 3 N -0.317 5.317 4 C -0.400 4.400 5 H 0.092 0.908 6 C -0.158 4.158 7 N -0.525 5.525 8 Si 0.675 3.325 9 H -0.217 1.217 10 H -0.222 1.222 11 H -0.186 1.186 12 C 0.036 3.964 13 C 0.014 3.986 14 H 0.092 0.908 15 C -0.105 4.105 16 N -0.266 5.266 17 C -0.123 4.123 18 C -0.108 4.108 19 C -0.015 4.015 20 O -0.290 6.290 21 H 0.073 0.927 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.841 -5.659 -11.431 13.643 hybrid contribution -1.056 0.665 -1.346 1.835 sum 3.785 -4.994 -12.777 14.231 Atomic orbital electron populations 1.22326 1.00172 0.99059 1.01290 1.20866 0.91058 0.86543 0.99404 1.43990 1.73412 1.11132 1.03141 1.18702 1.39279 0.92905 0.89080 0.90840 1.25537 0.97676 0.96344 0.96254 1.70032 1.38577 1.04114 1.39767 0.87294 0.85394 0.77565 0.82249 1.21731 1.22206 1.18566 1.21180 0.89690 0.96878 0.88638 1.23257 1.01481 0.79583 0.94274 0.90848 1.22882 0.87886 1.01160 0.98600 1.62202 1.24210 1.04172 1.36036 1.22366 0.99658 0.99109 0.91125 1.22792 1.01074 0.88618 0.98362 1.22532 0.86385 0.97669 0.94941 1.88025 1.27865 1.24247 1.88827 0.92688 0.94273 0.94438 0.92970 0.94030 0.92804 0.94296 0.91388 0.94531 0.89831 0.91247 0.91608 0.95924 0.94509 0.90382 0.89302 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.30 10.19 37.16 0.38 -2.93 16 2 C 0.15 3.12 6.15 -4.04 -0.02 3.09 16 3 N -0.60 -14.43 2.01 -173.23 -0.35 -14.78 16 4 C -0.27 -7.60 9.77 -15.06 -0.15 -7.75 16 5 H 0.07 2.24 8.06 -52.49 -0.42 1.82 16 6 C 0.04 1.24 5.02 -17.43 -0.09 1.15 16 7 N -0.89 -26.74 13.97 55.49 0.78 -25.96 16 8 Si 0.85 21.49 26.34 -169.99 -4.48 17.01 16 9 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 10 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 11 H -0.26 -6.31 5.87 56.52 0.33 -5.97 16 12 C 0.16 3.62 3.56 -4.04 -0.01 3.60 16 13 C 0.07 1.48 3.05 -26.68 -0.08 1.40 16 14 H 0.07 1.67 8.14 -51.93 -0.42 1.24 16 15 C 0.02 0.39 4.95 -3.71 -0.02 0.37 16 16 N -0.54 -8.14 4.99 -242.59 -1.21 -9.35 16 17 C 0.03 0.31 9.60 60.07 0.58 0.88 16 18 C 0.02 0.27 5.66 -3.71 -0.02 0.24 16 19 C 0.06 0.92 7.01 37.21 0.26 1.19 16 20 O -0.37 -6.95 8.88 -35.23 -0.31 -7.27 16 21 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 1.05 6.73 -51.93 -0.35 0.70 16 25 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 26 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 28 H 0.07 1.59 4.79 -51.93 -0.25 1.34 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 291.15 15.07 4.39 4.39 Total: -1.00 -30.32 291.15 -6.93 -37.25 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.56 Total: -2.55 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 0.82 Total: 1.25 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.78 Total: -50.09 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.31 Total: -7.27 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.48 Total: 17.01 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.32 -6.93 -37.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082491923.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.801 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds