Wall clock time and date at job start Mon Mar 30 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.46810 * 2 1 4 4 C 1.36938 * 120.00324 * 83.33000 * 3 2 1 5 5 H 1.08000 * 119.99994 * 39.87851 * 4 3 2 6 6 C 1.38806 * 120.00004 * 219.60758 * 4 3 2 7 7 N 1.31616 * 120.00146 * 211.51699 * 6 4 3 8 8 Si 1.86804 * 120.00042 * 31.51984 * 6 4 3 9 9 H 1.48499 * 109.47346 * 95.04687 * 8 6 4 10 10 H 1.48500 * 109.47084 * 215.04965 * 8 6 4 11 11 H 1.48499 * 109.46917 * 335.04653 * 8 6 4 12 12 C 1.46506 * 119.99938 * 263.32479 * 3 2 1 13 13 C 1.53003 * 109.47294 * 275.96575 * 12 3 2 14 14 H 1.08996 * 109.50218 * 305.00186 * 13 12 3 15 15 C 1.53094 * 109.50554 * 184.91158 * 13 12 3 16 16 N 1.47018 * 109.25569 * 183.21533 * 15 13 12 17 17 C 1.46903 * 111.00003 * 182.39327 * 16 15 13 18 18 C 1.47012 * 110.75159 * 58.61802 * 16 15 13 19 19 C 1.53101 * 109.25780 * 301.38370 * 18 16 15 20 20 O 1.43013 * 109.29588 * 56.82818 * 19 18 16 21 21 H 1.08997 * 109.46889 * 301.95654 * 1 2 3 22 22 H 1.08997 * 109.47446 * 61.96325 * 1 2 3 23 23 H 1.09003 * 109.46703 * 181.95753 * 1 2 3 24 24 H 1.09004 * 109.47027 * 239.99733 * 2 1 3 25 25 H 1.09003 * 109.46873 * 119.99795 * 2 1 3 26 26 H 0.96998 * 120.00572 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.47068 * 35.96307 * 12 3 2 28 28 H 1.08997 * 109.46891 * 155.96311 * 12 3 2 29 29 H 1.08996 * 109.50833 * 303.15099 * 15 13 12 30 30 H 1.09002 * 109.50356 * 63.28507 * 15 13 12 31 31 H 1.08998 * 109.46852 * 60.00318 * 17 16 15 32 32 H 1.08997 * 109.47206 * 180.02562 * 17 16 15 33 33 H 1.09001 * 109.46882 * 300.00198 * 17 16 15 34 34 H 1.09003 * 109.50773 * 61.31584 * 18 16 15 35 35 H 1.09000 * 109.50664 * 181.40745 * 18 16 15 36 36 H 1.09000 * 109.50746 * 176.78630 * 19 18 16 37 37 H 1.09005 * 109.50813 * 296.91334 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1166 2.0727 1.1778 5 1 2.4705 1.5747 2.0685 6 6 1.7668 3.4151 1.2258 7 7 2.3833 4.2264 2.0589 8 14 0.4211 4.0702 0.1080 9 1 -0.8716 4.0735 0.8389 10 1 0.7563 5.4548 -0.3112 11 1 0.3089 3.2030 -1.0922 12 6 2.4015 2.0227 -1.2602 13 6 3.8433 1.6458 -1.6066 14 1 4.4967 1.9018 -0.7726 15 6 4.2856 2.4113 -2.8565 16 7 5.6433 1.9880 -3.2292 17 6 6.1287 2.7413 -4.3932 18 6 5.6864 0.5406 -3.4830 19 6 5.2300 -0.2062 -2.2268 20 8 3.9217 0.2405 -1.8607 21 1 -0.3633 0.5439 0.8719 22 1 -0.3634 0.4830 -0.9070 23 1 -0.3633 -1.0271 0.0351 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.1391 5.1646 2.0922 27 1 1.7368 1.6862 -2.0559 28 1 2.3240 3.1048 -1.1552 29 1 3.5997 2.1972 -3.6761 30 1 4.2823 3.4812 -2.6481 31 1 6.1471 3.8049 -4.1557 32 1 7.1347 2.4081 -4.6479 33 1 5.4641 2.5695 -5.2400 34 1 5.0228 0.2966 -4.3127 35 1 6.7054 0.2450 -3.7328 36 1 5.2057 -1.2771 -2.4286 37 1 5.9243 -0.0046 -1.4111 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082491923.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:41 Heat of formation + Delta-G solvation = -36.883524 kcal Electronic energy + Delta-G solvation = -17142.423855 eV Core-core repulsion = 14533.829347 eV Total energy + Delta-G solvation = -2608.594507 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.59837 -37.89103 -36.44931 -33.98604 -33.16397 -30.87086 -29.70942 -27.53231 -25.61212 -24.94749 -23.60270 -21.74992 -21.33252 -18.84783 -17.46533 -17.14098 -16.72160 -16.44394 -15.93146 -15.81537 -15.38213 -15.07215 -14.91941 -14.55819 -13.93612 -13.67690 -13.36346 -13.20075 -12.99154 -12.79768 -12.63827 -12.47889 -12.31364 -12.09762 -11.95769 -11.61110 -11.49394 -11.33882 -10.60231 -10.47127 -9.37572 -8.67534 -8.23839 -5.52098 1.34111 1.43714 1.53615 2.44897 2.78038 2.94015 3.03294 3.46705 4.00012 4.03211 4.06415 4.21186 4.30561 4.45379 4.51605 4.54447 4.62739 4.64379 4.70161 4.73070 4.83501 4.88517 4.93440 4.96851 5.01713 5.15308 5.21830 5.31824 5.58469 5.91471 5.97208 6.03444 6.22460 6.37038 7.04391 7.68143 8.15946 8.96972 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.026899 B = 0.009560 C = 0.008124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.685026 B = 2928.264227 C = 3445.828435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 N -0.607 5.607 4 C -0.265 4.265 5 H 0.032 0.968 6 C -0.006 4.006 7 N -0.933 5.933 8 Si 0.915 3.085 9 H -0.295 1.295 10 H -0.293 1.293 11 H -0.240 1.240 12 C 0.161 3.839 13 C 0.087 3.913 14 H 0.032 0.968 15 C 0.032 3.968 16 N -0.561 5.561 17 C 0.026 3.974 18 C 0.024 3.976 19 C 0.055 3.945 20 O -0.386 6.386 21 H 0.032 0.968 22 H 0.042 0.958 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.031 0.969 26 H 0.263 0.737 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.405 -6.755 -14.812 16.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.021 3.979 3 N -0.329 5.329 4 C -0.395 4.395 5 H 0.049 0.951 6 C -0.204 4.204 7 N -0.575 5.575 8 Si 0.741 3.259 9 H -0.223 1.223 10 H -0.220 1.220 11 H -0.163 1.163 12 C 0.034 3.966 13 C 0.026 3.974 14 H 0.050 0.950 15 C -0.097 4.097 16 N -0.286 5.286 17 C -0.121 4.121 18 C -0.104 4.104 19 C -0.022 4.022 20 O -0.305 6.305 21 H 0.051 0.949 22 H 0.061 0.939 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.123 0.877 36 H 0.137 0.863 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.578 -6.645 -14.338 16.453 hybrid contribution -0.845 0.836 -0.424 1.262 sum 3.733 -5.809 -14.762 16.297 Atomic orbital electron populations 1.22207 0.98366 1.01029 1.00337 1.20951 0.92445 0.84830 0.99688 1.44089 1.74226 1.11983 1.02590 1.18511 1.38374 0.93112 0.89474 0.95078 1.26046 0.99298 0.96603 0.98424 1.70130 1.40235 1.04519 1.42612 0.86245 0.81473 0.77224 0.81006 1.22279 1.21968 1.16293 1.21190 0.91515 0.95917 0.87960 1.22774 0.98995 0.81042 0.94584 0.95013 1.22663 0.89469 1.00314 0.97238 1.62180 1.22845 1.05526 1.38098 1.22426 1.00762 0.98806 0.90119 1.22810 1.02797 0.87364 0.97385 1.22813 0.84400 0.99580 0.95407 1.87961 1.30227 1.23241 1.89110 0.94903 0.93916 0.90949 0.91319 0.95062 0.92748 0.92539 0.93005 0.93458 0.90277 0.91264 0.89619 0.94957 0.93740 0.87663 0.86334 0.94072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.92 10.19 71.98 0.73 -5.19 16 2 C 0.15 6.03 6.15 86.38 0.53 6.56 16 3 N -0.61 -29.44 2.01 -701.98 -1.41 -30.86 16 4 C -0.27 -15.33 9.77 84.03 0.82 -14.51 16 5 H 0.03 2.03 8.06 -2.91 -0.02 2.00 16 6 C -0.01 -0.33 5.02 84.86 0.43 0.10 16 7 N -0.93 -58.23 13.97 21.65 0.30 -57.92 16 8 Si 0.91 44.93 26.34 68.60 1.81 46.74 16 9 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 10 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 11 H -0.24 -10.81 5.87 99.48 0.58 -10.22 16 12 C 0.16 6.97 3.56 86.38 0.31 7.28 16 13 C 0.09 3.41 3.05 30.63 0.09 3.50 16 14 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 15 C 0.03 1.03 4.95 86.31 0.43 1.46 16 16 N -0.56 -15.61 4.99 -921.42 -4.59 -20.20 16 17 C 0.03 0.55 9.60 127.69 1.23 1.78 16 18 C 0.02 0.57 5.66 86.32 0.49 1.06 16 19 C 0.05 1.51 7.01 72.02 0.50 2.02 16 20 O -0.39 -13.93 8.88 -148.98 -1.32 -15.26 16 21 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.07 2.62 6.73 -2.38 -0.02 2.60 16 25 H 0.03 1.34 8.09 -2.39 -0.02 1.32 16 26 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 27 H 0.06 2.25 8.09 -2.39 -0.02 2.23 16 28 H 0.05 2.40 4.79 -2.39 -0.01 2.38 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 30 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.12 2.54 8.14 -2.39 -0.02 2.53 16 37 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -66.62 291.15 1.22 -65.39 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 0.88 Total: 8.05 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 5.56 Total: 4.06 kcal Atomic # 7 Polarization: -103.28 SS G_CDS: -5.70 Total: -108.98 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -1.32 Total: -15.26 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.81 Total: 46.74 kcal Total: -66.62 1.22 -65.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082491923.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.507 kcal (2) G-P(sol) polarization free energy of solvation -66.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds