Wall clock time and date at job start Mon Mar 30 2020 02:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47194 * 2 1 4 4 C 1.36936 * 119.99957 * 275.30586 * 3 2 1 5 5 H 1.08003 * 119.99896 * 37.68389 * 4 3 2 6 6 C 1.38816 * 120.00393 * 217.67657 * 4 3 2 7 7 N 1.31612 * 119.99586 * 21.31711 * 6 4 3 8 8 Si 1.86794 * 120.00079 * 201.31863 * 6 4 3 9 9 H 1.48499 * 109.47511 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47146 * 119.99952 * 8 6 4 11 11 H 1.48500 * 109.47123 * 239.99876 * 8 6 4 12 12 C 1.46493 * 120.00043 * 95.31398 * 3 2 1 13 13 C 1.53004 * 109.46724 * 269.99859 * 12 3 2 14 14 H 1.08997 * 109.50886 * 60.08723 * 13 12 3 15 15 C 1.53102 * 109.53825 * 180.19667 * 13 12 3 16 16 N 1.47017 * 109.25715 * 176.80799 * 15 13 12 17 17 C 1.46896 * 111.00223 * 177.60779 * 16 15 13 18 18 C 1.47020 * 110.74944 * 301.38303 * 16 15 13 19 19 C 1.53095 * 109.25799 * 58.61304 * 18 16 15 20 20 O 1.43013 * 109.26221 * 303.14995 * 19 18 16 21 21 H 1.09006 * 109.47271 * 59.99525 * 1 2 3 22 22 H 1.08995 * 109.47332 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47318 * 300.00400 * 1 2 3 24 24 H 1.09002 * 109.46747 * 240.00341 * 2 1 3 25 25 H 1.08999 * 109.47471 * 120.00096 * 2 1 3 26 26 H 0.97001 * 120.00121 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47771 * 149.99711 * 12 3 2 28 28 H 1.09002 * 109.47351 * 29.99545 * 12 3 2 29 29 H 1.08995 * 109.51216 * 56.87168 * 15 13 12 30 30 H 1.09001 * 109.50898 * 296.73641 * 15 13 12 31 31 H 1.09003 * 109.46915 * 179.67937 * 17 16 15 32 32 H 1.09001 * 109.47121 * 299.67321 * 17 16 15 33 33 H 1.08996 * 109.47150 * 59.67894 * 17 16 15 34 34 H 1.08998 * 109.50918 * 178.55534 * 18 16 15 35 35 H 1.09002 * 109.50165 * 298.63780 * 18 16 15 36 36 H 1.08999 * 109.50781 * 63.09287 * 19 18 16 37 37 H 1.09009 * 109.50547 * 183.17449 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1432 2.0633 -1.1808 5 1 1.4097 1.9291 -1.9621 6 6 3.2123 2.9274 -1.3737 7 7 4.3033 2.7961 -0.6493 8 14 3.1026 4.2763 -2.6611 9 1 1.7806 4.2117 -3.3345 10 1 3.2596 5.5997 -2.0061 11 1 4.1801 4.0904 -3.6660 12 6 2.3733 2.0326 1.2632 13 6 1.1426 2.7382 1.8365 14 1 0.3543 2.0071 2.0155 15 6 1.5130 3.4238 3.1544 16 7 0.3474 4.1630 3.6607 17 6 0.6437 4.7905 4.9554 18 6 -0.1010 5.1631 2.6808 19 6 -0.4550 4.4601 1.3677 20 8 0.6798 3.7217 0.9070 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8932 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 5.0506 3.3996 -0.7843 27 1 3.1617 2.7640 1.0860 28 1 2.7255 1.2833 1.9721 29 1 2.3377 4.1161 2.9854 30 1 1.8121 2.6716 3.8844 31 1 -0.2335 5.3354 5.3043 32 1 0.9053 4.0203 5.6811 33 1 1.4791 5.4813 4.8416 34 1 -0.9798 5.6807 3.0651 35 1 0.6978 5.8837 2.5048 36 1 -1.2898 3.7791 1.5330 37 1 -0.7341 5.2034 0.6207 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082491924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:43 Heat of formation + Delta-G solvation = -16.088580 kcal Electronic energy + Delta-G solvation = -17333.962072 eV Core-core repulsion = 14726.269301 eV Total energy + Delta-G solvation = -2607.692771 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.02799 -35.93104 -34.85742 -31.70223 -31.39238 -28.82790 -28.26436 -25.78568 -23.79372 -23.61088 -21.60730 -20.07738 -19.77725 -16.58884 -15.76631 -15.71965 -14.86249 -14.64462 -14.43512 -14.20007 -13.50854 -13.37798 -13.17625 -12.44905 -12.29441 -12.12138 -11.87557 -11.61728 -11.24266 -11.09466 -10.92998 -10.66865 -10.51083 -10.35775 -10.21500 -9.83941 -9.67157 -9.47258 -8.79662 -8.30355 -8.13754 -6.41845 -5.62841 -3.18732 3.47368 3.54878 3.59461 4.09373 4.57745 4.65342 5.16615 5.31221 5.36052 5.51714 5.55261 5.62120 5.66364 5.80337 5.85407 5.88552 6.00621 6.06415 6.13676 6.22247 6.38630 6.43895 6.55322 6.71416 6.72781 6.80253 7.00085 7.17755 7.19158 7.26325 7.71398 7.98200 8.14126 8.69014 9.33994 9.97954 10.54380 11.38291 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.022855 B = 0.010684 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.833990 B = 2620.027528 C = 3141.028378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.577 5.577 4 C -0.233 4.233 5 H 0.055 0.945 6 C 0.015 3.985 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.290 1.290 11 H -0.295 1.295 12 C 0.152 3.848 13 C 0.078 3.922 14 H 0.046 0.954 15 C 0.023 3.977 16 N -0.543 5.543 17 C 0.026 3.974 18 C 0.019 3.981 19 C 0.058 3.942 20 O -0.339 6.339 21 H 0.049 0.951 22 H 0.033 0.967 23 H 0.042 0.958 24 H 0.044 0.956 25 H 0.032 0.968 26 H 0.250 0.750 27 H 0.100 0.900 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.074 0.926 35 H 0.038 0.962 36 H 0.047 0.953 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.069 2.049 8.407 11.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.014 3.986 3 N -0.296 5.296 4 C -0.363 4.363 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.217 1.217 11 H -0.222 1.222 12 C 0.024 3.976 13 C 0.017 3.983 14 H 0.064 0.936 15 C -0.106 4.106 16 N -0.268 5.268 17 C -0.123 4.123 18 C -0.109 4.109 19 C -0.020 4.020 20 O -0.257 6.257 21 H 0.068 0.932 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.118 0.882 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.190 1.805 8.261 11.099 hybrid contribution 0.354 1.517 -0.268 1.580 sum -6.836 3.322 7.993 11.029 Atomic orbital electron populations 1.22362 1.00162 0.98655 1.01256 1.20858 0.91722 0.87349 0.98655 1.43611 1.75647 1.07959 1.02419 1.18862 1.03698 1.20295 0.93412 0.92693 1.25030 0.94269 1.01012 0.98082 1.69987 1.03321 1.37636 1.42977 0.86331 0.77260 0.82698 0.81025 1.20232 1.21712 1.22213 1.20970 0.93947 0.96257 0.86396 1.23258 0.99416 0.89327 0.86278 0.93561 1.22895 0.91216 0.97918 0.98568 1.62259 1.34941 1.26457 1.03163 1.22354 0.99799 0.98472 0.91667 1.22805 1.00007 0.94023 0.94089 1.22537 0.90504 0.95288 0.93708 1.88362 1.45257 1.50673 1.41382 0.93193 0.94762 0.93917 0.93789 0.94942 0.93972 0.88203 0.94352 0.94023 0.90493 0.91807 0.91500 0.95833 0.90726 0.94331 0.93494 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 10.21 37.16 0.38 -2.76 16 2 C 0.14 3.04 6.44 -4.04 -0.03 3.02 16 3 N -0.58 -14.59 2.38 -173.24 -0.41 -15.00 16 4 C -0.23 -6.52 8.80 -15.06 -0.13 -6.65 16 5 H 0.06 1.57 7.92 -52.48 -0.42 1.16 16 6 C 0.01 0.42 4.95 -17.43 -0.09 0.34 16 7 N -0.90 -26.27 11.47 55.49 0.64 -25.64 16 8 Si 0.90 22.67 29.60 -169.99 -5.03 17.64 16 9 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 C 0.15 3.59 5.08 -4.04 -0.02 3.57 16 13 C 0.08 1.62 3.08 -26.68 -0.08 1.54 16 14 H 0.05 0.97 6.64 -51.93 -0.35 0.62 16 15 C 0.02 0.40 4.95 -3.71 -0.02 0.38 16 16 N -0.54 -8.62 4.99 -242.59 -1.21 -9.83 16 17 C 0.03 0.32 9.61 60.06 0.58 0.90 16 18 C 0.02 0.30 5.66 -3.71 -0.02 0.27 16 19 C 0.06 1.01 7.01 37.21 0.26 1.27 16 20 O -0.34 -7.62 9.74 -35.23 -0.34 -7.96 16 21 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.04 0.81 6.64 -51.93 -0.35 0.47 16 24 H 0.04 0.97 8.08 -51.93 -0.42 0.55 16 25 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 26 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.10 2.71 5.52 -51.93 -0.29 2.42 16 28 H 0.04 0.84 7.86 -51.93 -0.41 0.43 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.38 8.14 -51.92 -0.42 0.96 16 LS Contribution 293.66 15.07 4.43 4.43 Total: -1.00 -30.38 293.66 -7.52 -37.90 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -6.41 Total: -3.42 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 0.83 Total: 1.88 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -0.99 Total: -50.47 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.34 Total: -7.96 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.38 -7.52 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082491924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.812 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds