Wall clock time and date at job start Mon Mar 30 2020 02:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47194 * 2 1 4 4 C 1.36936 * 119.99957 * 275.30586 * 3 2 1 5 5 H 1.08003 * 119.99896 * 37.68389 * 4 3 2 6 6 C 1.38816 * 120.00393 * 217.67657 * 4 3 2 7 7 N 1.31612 * 119.99586 * 21.31711 * 6 4 3 8 8 Si 1.86794 * 120.00079 * 201.31863 * 6 4 3 9 9 H 1.48499 * 109.47511 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47146 * 119.99952 * 8 6 4 11 11 H 1.48500 * 109.47123 * 239.99876 * 8 6 4 12 12 C 1.46493 * 120.00043 * 95.31398 * 3 2 1 13 13 C 1.53004 * 109.46724 * 269.99859 * 12 3 2 14 14 H 1.08997 * 109.50886 * 60.08723 * 13 12 3 15 15 C 1.53102 * 109.53825 * 180.19667 * 13 12 3 16 16 N 1.47017 * 109.25715 * 176.80799 * 15 13 12 17 17 C 1.46896 * 111.00223 * 177.60779 * 16 15 13 18 18 C 1.47020 * 110.74944 * 301.38303 * 16 15 13 19 19 C 1.53095 * 109.25799 * 58.61304 * 18 16 15 20 20 O 1.43013 * 109.26221 * 303.14995 * 19 18 16 21 21 H 1.09006 * 109.47271 * 59.99525 * 1 2 3 22 22 H 1.08995 * 109.47332 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47318 * 300.00400 * 1 2 3 24 24 H 1.09002 * 109.46747 * 240.00341 * 2 1 3 25 25 H 1.08999 * 109.47471 * 120.00096 * 2 1 3 26 26 H 0.97001 * 120.00121 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47771 * 149.99711 * 12 3 2 28 28 H 1.09002 * 109.47351 * 29.99545 * 12 3 2 29 29 H 1.08995 * 109.51216 * 56.87168 * 15 13 12 30 30 H 1.09001 * 109.50898 * 296.73641 * 15 13 12 31 31 H 1.09003 * 109.46915 * 179.67937 * 17 16 15 32 32 H 1.09001 * 109.47121 * 299.67321 * 17 16 15 33 33 H 1.08996 * 109.47150 * 59.67894 * 17 16 15 34 34 H 1.08998 * 109.50918 * 178.55534 * 18 16 15 35 35 H 1.09002 * 109.50165 * 298.63780 * 18 16 15 36 36 H 1.08999 * 109.50781 * 63.09287 * 19 18 16 37 37 H 1.09009 * 109.50547 * 183.17449 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1432 2.0633 -1.1808 5 1 1.4097 1.9291 -1.9621 6 6 3.2123 2.9274 -1.3737 7 7 4.3033 2.7961 -0.6493 8 14 3.1026 4.2763 -2.6611 9 1 1.7806 4.2117 -3.3345 10 1 3.2596 5.5997 -2.0061 11 1 4.1801 4.0904 -3.6660 12 6 2.3733 2.0326 1.2632 13 6 1.1426 2.7382 1.8365 14 1 0.3543 2.0071 2.0155 15 6 1.5130 3.4238 3.1544 16 7 0.3474 4.1630 3.6607 17 6 0.6437 4.7905 4.9554 18 6 -0.1010 5.1631 2.6808 19 6 -0.4550 4.4601 1.3677 20 8 0.6798 3.7217 0.9070 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.8932 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 5.0506 3.3996 -0.7843 27 1 3.1617 2.7640 1.0860 28 1 2.7255 1.2833 1.9721 29 1 2.3377 4.1161 2.9854 30 1 1.8121 2.6716 3.8844 31 1 -0.2335 5.3354 5.3043 32 1 0.9053 4.0203 5.6811 33 1 1.4791 5.4813 4.8416 34 1 -0.9798 5.6807 3.0651 35 1 0.6978 5.8837 2.5048 36 1 -1.2898 3.7791 1.5330 37 1 -0.7341 5.2034 0.6207 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082491924.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:42 Heat of formation + Delta-G solvation = -36.802605 kcal Electronic energy + Delta-G solvation = -17334.860299 eV Core-core repulsion = 14726.269301 eV Total energy + Delta-G solvation = -2608.590998 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.48030 -37.69526 -36.33846 -33.73992 -32.93903 -30.47302 -29.69658 -27.49049 -25.56167 -24.95017 -23.14088 -21.92663 -21.24345 -18.58923 -17.40875 -17.09645 -16.54108 -16.19639 -15.81553 -15.77894 -15.39900 -15.02557 -14.58617 -14.09607 -14.01435 -13.37478 -13.18545 -13.11570 -12.88523 -12.81187 -12.62974 -12.43693 -12.20109 -12.17540 -11.88729 -11.75223 -11.40893 -11.18917 -10.44240 -10.29522 -9.41260 -8.46990 -7.73502 -5.33755 1.43907 1.47587 1.57266 2.55981 2.86967 3.10286 3.36000 3.71647 4.03228 4.10174 4.15490 4.25342 4.32121 4.46807 4.57073 4.62745 4.65964 4.71219 4.78631 4.83809 4.86193 4.94411 4.95727 5.02638 5.10413 5.13825 5.32942 5.60985 5.73257 5.81400 5.90745 6.01594 6.50218 6.67620 7.26830 7.96080 8.46840 9.22484 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.022855 B = 0.010684 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.833990 B = 2620.027528 C = 3141.028378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.135 3.865 3 N -0.594 5.594 4 C -0.233 4.233 5 H 0.043 0.957 6 C -0.031 4.031 7 N -0.922 5.922 8 Si 0.948 3.052 9 H -0.273 1.273 10 H -0.295 1.295 11 H -0.292 1.292 12 C 0.153 3.847 13 C 0.089 3.911 14 H 0.047 0.953 15 C 0.032 3.968 16 N -0.548 5.548 17 C 0.025 3.975 18 C 0.024 3.976 19 C 0.051 3.949 20 O -0.381 6.381 21 H 0.031 0.969 22 H 0.067 0.933 23 H 0.042 0.958 24 H 0.033 0.967 25 H 0.050 0.950 26 H 0.247 0.753 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.021 0.979 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.021 0.979 34 H 0.108 0.892 35 H 0.026 0.974 36 H 0.053 0.947 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.587 2.214 9.610 13.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.009 3.991 3 N -0.314 5.314 4 C -0.364 4.364 5 H 0.061 0.939 6 C -0.227 4.227 7 N -0.567 5.567 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.222 1.222 11 H -0.219 1.219 12 C 0.026 3.974 13 C 0.028 3.972 14 H 0.065 0.935 15 C -0.097 4.097 16 N -0.273 5.273 17 C -0.123 4.123 18 C -0.105 4.105 19 C -0.026 4.026 20 O -0.299 6.299 21 H 0.050 0.950 22 H 0.086 0.914 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.039 0.961 34 H 0.126 0.874 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.734 1.962 9.479 13.038 hybrid contribution 0.774 1.422 -0.611 1.730 sum -7.960 3.384 8.868 12.387 Atomic orbital electron populations 1.22155 0.97843 1.00541 1.00279 1.21007 0.93419 0.85643 0.98992 1.43826 1.76051 1.09366 1.02178 1.18933 1.02910 1.20482 0.94072 0.93906 1.25588 0.94201 1.02812 1.00067 1.70094 1.03774 1.38326 1.44524 0.85510 0.77283 0.80215 0.79194 1.19734 1.22204 1.21921 1.20868 0.94414 0.95890 0.86242 1.22922 0.97752 0.89359 0.87129 0.93507 1.22701 0.91369 0.98056 0.97581 1.62282 1.33695 1.27013 1.04285 1.22457 1.00837 0.98915 0.90067 1.22790 1.00909 0.93504 0.93252 1.22759 0.89164 0.95405 0.95272 1.88279 1.47153 1.51457 1.43036 0.95021 0.91386 0.93929 0.94859 0.93160 0.94375 0.91807 0.93218 0.96040 0.88783 0.89528 0.90258 0.96062 0.87404 0.95525 0.92882 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.43 10.21 71.98 0.73 -4.69 16 2 C 0.13 5.73 6.44 86.38 0.56 6.29 16 3 N -0.59 -30.19 2.38 -702.01 -1.67 -31.86 16 4 C -0.23 -13.24 8.80 84.03 0.74 -12.50 16 5 H 0.04 2.50 7.92 -2.91 -0.02 2.47 16 6 C -0.03 -1.76 4.95 84.86 0.42 -1.34 16 7 N -0.92 -55.29 11.47 21.65 0.25 -55.04 16 8 Si 0.95 47.31 29.60 68.60 2.03 49.35 16 9 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 10 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 11 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 12 C 0.15 7.29 5.08 86.38 0.44 7.73 16 13 C 0.09 3.64 3.08 30.63 0.09 3.73 16 14 H 0.05 1.90 6.64 -2.39 -0.02 1.89 16 15 C 0.03 1.10 4.95 86.31 0.43 1.53 16 16 N -0.55 -16.05 4.99 -921.42 -4.59 -20.64 16 17 C 0.02 0.55 9.61 127.69 1.23 1.78 16 18 C 0.02 0.68 5.66 86.31 0.49 1.17 16 19 C 0.05 1.73 7.01 72.01 0.50 2.23 16 20 O -0.38 -17.04 9.74 -148.98 -1.45 -18.49 16 21 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 22 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.04 1.54 6.64 -2.39 -0.02 1.52 16 24 H 0.03 1.46 8.08 -2.39 -0.02 1.44 16 25 H 0.05 1.94 7.83 -2.39 -0.02 1.92 16 26 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 27 H 0.06 3.56 5.52 -2.39 -0.01 3.55 16 28 H 0.05 2.17 7.86 -2.39 -0.02 2.16 16 29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 Total: -1.00 -65.43 293.66 1.21 -64.23 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 1.01 Total: 6.54 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.63 Total: 5.92 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -6.02 Total: -107.54 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -1.45 Total: -18.49 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.35 kcal Total: -65.43 1.21 -64.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082491924.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.424 kcal (2) G-P(sol) polarization free energy of solvation -65.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds