Wall clock time and date at job start Mon Mar 30 2020 03:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21511 * 120.00243 * 2 1 4 4 C 1.40843 * 119.99848 * 180.02562 * 2 1 3 5 5 C 1.37546 * 126.14881 * 179.97438 * 4 2 1 6 6 N 1.30417 * 113.92996 * 179.97438 * 5 4 2 7 7 C 1.30484 * 117.36564 * 0.02562 * 6 5 4 8 8 S 1.76201 * 124.71044 * 180.02562 * 7 6 5 9 9 C 1.76205 * 100.00100 * 359.96916 * 8 7 6 10 10 H 1.07999 * 119.99614 * 0.02562 * 9 8 7 11 11 C 1.38838 * 119.99879 * 180.02562 * 9 8 7 12 12 N 1.31499 * 120.00034 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 119.99738 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47255 * 59.99885 * 13 11 9 15 15 H 1.48500 * 109.47083 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47440 * 299.99909 * 13 11 9 17 17 S 1.70912 * 110.57521 * 359.74185 * 7 6 5 18 18 H 1.09002 * 109.47152 * 269.99722 * 1 2 3 19 19 H 1.09001 * 109.46980 * 149.99822 * 1 2 3 20 20 H 1.09004 * 109.47113 * 29.99803 * 1 2 3 21 21 H 1.07997 * 123.03152 * 359.97438 * 5 4 2 22 22 H 0.97005 * 120.00243 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1146 1.0523 0.0000 4 6 2.2112 -1.2198 -0.0005 5 6 3.5788 -1.3671 -0.0011 6 7 3.9770 -2.6090 -0.0010 7 6 3.0567 -3.5340 -0.0009 8 16 3.3758 -5.2669 -0.0001 9 6 5.1378 -5.2535 -0.0005 10 1 5.6706 -4.3141 -0.0007 11 6 5.8411 -6.4506 -0.0006 12 7 5.1922 -7.5944 0.0001 13 14 7.7089 -6.4364 -0.0003 14 1 8.1984 -5.7328 1.2124 15 1 8.2145 -7.8327 0.0001 16 1 8.1989 -5.7325 -1.2126 17 16 1.4987 -2.8312 0.0062 18 1 -0.3633 0.0000 1.0277 19 1 -0.3633 -0.8900 -0.5139 20 1 -0.3633 0.8900 -0.5138 21 1 4.2611 -0.5300 -0.0016 22 1 5.6835 -8.4308 -0.0004 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083252139.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:02 Heat of formation + Delta-G solvation = -28.425994 kcal Electronic energy + Delta-G solvation = -10966.387093 eV Core-core repulsion = 8738.447128 eV Total energy + Delta-G solvation = -2227.939965 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 228.997 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.88311 -39.47322 -34.89168 -32.51874 -30.24364 -27.89713 -26.98801 -22.75576 -21.22070 -20.10325 -18.59484 -17.59075 -17.06357 -16.33333 -16.27582 -15.60128 -15.11535 -15.08321 -14.77215 -13.43174 -13.29828 -13.06559 -13.04511 -13.00259 -12.39017 -12.10915 -11.51962 -11.18123 -11.03680 -10.66439 -10.42055 -10.30903 -8.78559 -8.64256 -6.38056 -0.96587 0.19919 0.71414 1.09146 1.20146 1.35005 1.40197 1.47783 2.05205 2.08893 2.79989 2.91176 3.40037 3.71586 4.19241 4.35750 4.64050 4.74438 5.03454 5.19755 5.38109 6.13784 6.57948 6.71969 6.84178 8.43754 Molecular weight = 229.00amu Principal moments of inertia in cm(-1) A = 0.057545 B = 0.006925 C = 0.006202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.455865 B = 4042.491610 C = 4513.800805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.434 3.566 3 O -0.516 6.516 4 C -0.399 4.399 5 C 0.153 3.847 6 N -0.536 5.536 7 C -0.003 4.003 8 S 0.173 5.827 9 C -0.567 4.567 10 H 0.095 0.905 11 C 0.035 3.965 12 N -0.893 5.893 13 Si 0.996 3.004 14 H -0.267 1.267 15 H -0.266 1.266 16 H -0.267 1.267 17 S 0.239 5.761 18 H 0.116 0.884 19 H 0.093 0.907 20 H 0.101 0.899 21 H 0.185 0.815 22 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.350 6.567 0.105 10.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.317 3.683 3 O -0.399 6.399 4 C -0.528 4.528 5 C -0.015 4.015 6 N -0.257 5.257 7 C -0.379 4.379 8 S 0.416 5.584 9 C -0.717 4.717 10 H 0.113 0.887 11 C -0.173 4.173 12 N -0.527 5.527 13 Si 0.818 3.182 14 H -0.192 1.192 15 H -0.190 1.190 16 H -0.192 1.192 17 S 0.491 5.509 18 H 0.135 0.865 19 H 0.111 0.889 20 H 0.120 0.880 21 H 0.201 0.799 22 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.269 5.032 0.113 10.548 hybrid contribution 2.696 1.463 -0.012 3.067 sum -6.573 6.495 0.101 9.241 Atomic orbital electron populations 1.22265 0.90503 1.05775 1.06270 1.20241 0.93050 0.84970 0.70046 1.90571 1.73188 1.34414 1.41719 1.25269 0.98130 1.00091 1.29343 1.22884 0.93447 0.93651 0.91537 1.66663 1.35837 1.00294 1.22875 1.29982 0.97299 1.07538 1.03097 1.83283 1.09317 0.87275 1.78569 1.23612 0.91372 0.97258 1.59439 0.88662 1.26036 1.05518 0.93585 0.92177 1.69928 1.39093 0.98570 1.45093 0.85015 0.75607 0.78151 0.79453 1.19177 1.18983 1.19170 1.82747 1.05286 0.94758 1.68133 0.86548 0.88851 0.88026 0.79864 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.59 9.97 71.24 0.71 -2.88 14 2 C 0.43 12.74 7.03 26.32 0.19 12.93 14 3 O -0.52 -18.31 17.52 -3.75 -0.07 -18.37 14 4 C -0.40 -13.23 6.27 22.74 0.14 -13.09 14 5 C 0.15 5.84 11.09 84.74 0.94 6.78 14 6 N -0.54 -23.96 9.14 -198.21 -1.81 -25.77 14 7 C 0.00 -0.15 7.44 130.44 0.97 0.82 14 8 S 0.17 8.25 21.87 -56.49 -1.24 7.02 14 9 C -0.57 -30.55 9.35 67.96 0.64 -29.92 14 10 H 0.10 5.30 6.83 -2.91 -0.02 5.28 14 11 C 0.04 1.83 5.49 84.89 0.47 2.30 14 12 N -0.89 -47.49 13.22 21.65 0.29 -47.21 14 13 Si 1.00 41.30 29.55 68.60 2.03 43.33 14 14 H -0.27 -10.94 7.11 99.48 0.71 -10.23 14 15 H -0.27 -10.27 7.11 99.48 0.71 -9.56 14 16 H -0.27 -10.93 7.11 99.48 0.71 -10.22 14 17 S 0.24 7.48 22.02 -56.49 -1.24 6.24 14 18 H 0.12 1.74 8.14 -2.39 -0.02 1.72 14 19 H 0.09 1.51 7.31 -2.39 -0.02 1.50 14 20 H 0.10 1.65 8.14 -2.38 -0.02 1.63 14 21 H 0.18 6.42 8.04 -2.91 -0.02 6.39 14 22 H 0.29 14.01 8.31 -92.70 -0.77 13.24 14 Total: -1.00 -61.34 238.06 3.26 -58.08 By element: Atomic # 1 Polarization: -1.51 SS G_CDS: 1.25 Total: -0.26 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 4.05 Total: -23.05 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: -1.53 Total: -72.98 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.07 Total: -18.37 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 16 Polarization: 15.74 SS G_CDS: -2.48 Total: 13.26 kcal Total: -61.34 3.26 -58.08 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083252139.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.653 kcal (2) G-P(sol) polarization free energy of solvation -61.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds