Wall clock time and date at job start Mon Mar 30 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86790 * 120.00360 * 2 1 4 4 H 1.48502 * 109.47245 * 270.00124 * 3 2 1 5 5 H 1.48501 * 109.47356 * 30.00052 * 3 2 1 6 6 H 1.48499 * 109.47321 * 150.00192 * 3 2 1 7 7 C 1.37876 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00356 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47122 * 60.00596 * 9 7 2 11 11 N 1.46906 * 109.47167 * 300.00384 * 9 7 2 12 12 C 1.50697 * 109.47576 * 180.02562 * 9 7 2 13 13 C 1.38270 * 119.97416 * 79.72722 * 12 9 7 14 14 C 1.38216 * 120.05986 * 179.77257 * 13 12 9 15 15 C 1.38320 * 120.01105 * 0.50450 * 14 13 12 16 16 Cl 1.73603 * 120.02054 * 179.77059 * 15 14 13 17 17 C 1.38544 * 119.95351 * 359.74538 * 15 14 13 18 18 F 1.35097 * 120.03231 * 180.02562 * 17 15 14 19 19 C 1.38194 * 119.97702 * 260.00244 * 12 9 7 20 20 H 0.97005 * 119.99198 * 359.97438 * 1 2 3 21 21 H 1.00896 * 111.00309 * 299.99562 * 11 9 7 22 22 H 1.00902 * 110.99923 * 63.95725 * 11 9 7 23 23 H 1.07997 * 119.96880 * 359.97438 * 13 12 9 24 24 H 1.08003 * 119.99063 * 180.22808 * 14 13 12 25 25 H 1.07994 * 120.00559 * 359.97438 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4068 -2.5772 1.1992 12 6 2.2301 -3.6447 -0.0005 13 6 2.8414 -4.0310 1.1780 14 6 3.7361 -5.0844 1.1809 15 6 4.0290 -5.7467 0.0024 16 17 5.1573 -7.0660 0.0047 17 6 3.4207 -5.3567 -1.1797 18 9 3.7052 -6.0027 -2.3316 19 6 2.5208 -4.3046 -1.1794 20 1 -0.4849 0.8402 0.0004 21 1 0.9650 -2.5260 2.0381 22 1 -0.3006 -1.8577 1.1910 23 1 2.6169 -3.5112 2.0977 24 1 4.2101 -5.3876 2.1028 25 1 2.0461 -3.9997 -2.1003 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084362930.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:56 Heat of formation + Delta-G solvation = -39.048023 kcal Electronic energy + Delta-G solvation = -13354.931167 eV Core-core repulsion = 10694.106808 eV Total energy + Delta-G solvation = -2660.824359 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -48.58070 -38.82132 -36.38288 -34.63341 -31.68137 -30.44171 -29.07798 -26.08901 -23.28100 -22.51225 -20.27092 -17.12965 -16.69682 -16.11588 -15.86877 -15.35984 -14.99227 -14.29973 -13.54151 -13.11440 -12.99503 -12.61392 -12.58453 -11.80126 -11.59374 -11.29042 -11.02001 -10.86343 -10.78841 -10.59812 -10.09864 -9.82539 -8.79309 -8.52069 -8.08573 -7.35289 -6.22683 -4.40225 1.49961 1.57515 2.30740 3.15836 3.23676 3.26815 3.98572 4.25117 4.47018 4.99283 5.10338 5.39698 5.61006 5.77632 6.08574 6.28075 6.37114 6.39726 6.74076 6.87230 7.20796 7.51825 7.61671 7.90839 8.50552 8.76767 8.95736 9.32378 10.75443 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.042236 B = 0.006742 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.780282 B = 4152.281601 C = 4192.280734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.069 3.931 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.549 4.549 8 H 0.058 0.942 9 C 0.237 3.763 10 H 0.053 0.947 11 N -0.849 5.849 12 C 0.011 3.989 13 C -0.108 4.108 14 C -0.088 4.088 15 C -0.097 4.097 16 Cl -0.076 7.076 17 C 0.104 3.896 18 F -0.137 7.137 19 C -0.148 4.148 20 H 0.268 0.732 21 H 0.313 0.687 22 H 0.359 0.641 23 H 0.135 0.865 24 H 0.133 0.867 25 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.559 -7.822 1.492 9.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.135 4.135 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.589 4.589 8 H 0.076 0.924 9 C 0.127 3.873 10 H 0.071 0.929 11 N -0.380 5.380 12 C 0.010 3.990 13 C -0.126 4.126 14 C -0.106 4.106 15 C -0.124 4.124 16 Cl -0.047 7.047 17 C 0.084 3.916 18 F -0.116 7.116 19 C -0.167 4.167 20 H 0.078 0.922 21 H 0.122 0.878 22 H 0.175 0.825 23 H 0.153 0.847 24 H 0.151 0.849 25 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.276 -8.563 1.164 10.125 hybrid contribution 1.053 1.710 -0.101 2.011 sum 6.329 -6.853 1.063 9.389 Atomic orbital electron populations 1.69739 1.05890 1.27510 1.49794 1.25013 0.94973 0.99440 0.94037 0.86462 0.79800 0.82622 0.78397 1.20411 1.21048 1.19763 1.21756 0.93726 0.90678 1.52729 0.92352 1.18073 0.89007 0.87803 0.92371 0.92937 1.59540 1.18372 1.56309 1.03757 1.20521 0.94005 0.93603 0.90894 1.21017 0.96060 0.96189 0.99361 1.20885 0.98220 0.95647 0.95882 1.20759 1.00345 0.96519 0.94798 1.98330 1.60448 1.47028 1.98898 1.17397 0.98943 0.94668 0.80623 1.91475 1.92460 1.80353 1.47302 1.21048 0.99442 0.95583 1.00642 0.92243 0.87771 0.82450 0.84716 0.84892 0.84277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.34 11.54 55.43 0.64 -22.70 15 2 C 0.07 1.75 5.38 -17.82 -0.10 1.66 15 3 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 15 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 7 C -0.55 -13.88 8.70 -34.44 -0.30 -14.18 15 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 15 9 C 0.24 5.50 2.95 -70.02 -0.21 5.30 15 10 H 0.05 1.34 8.00 -51.93 -0.42 0.92 15 11 N -0.85 -18.77 9.02 -6.65 -0.06 -18.83 15 12 C 0.01 0.22 4.89 -104.63 -0.51 -0.30 15 13 C -0.11 -1.90 9.28 -39.58 -0.37 -2.27 15 14 C -0.09 -1.38 9.83 -39.56 -0.39 -1.77 15 15 C -0.10 -1.60 6.33 -39.44 -0.25 -1.85 15 16 Cl -0.08 -1.11 28.62 -51.86 -1.48 -2.59 15 17 C 0.10 1.84 7.28 -39.39 -0.29 1.56 15 18 F -0.14 -2.40 16.84 2.25 0.04 -2.36 15 19 C -0.15 -2.79 9.65 -39.52 -0.38 -3.17 15 20 H 0.27 6.73 8.31 -40.82 -0.34 6.39 15 21 H 0.31 6.43 7.34 -39.29 -0.29 6.14 15 22 H 0.36 8.57 7.08 -39.29 -0.28 8.29 15 23 H 0.14 2.25 6.67 -52.49 -0.35 1.90 15 24 H 0.13 1.71 8.06 -52.48 -0.42 1.29 15 25 H 0.14 2.51 8.04 -52.49 -0.42 2.08 15 LS Contribution 242.39 15.07 3.65 3.65 Total: -1.00 -25.39 242.39 -6.74 -32.13 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -1.72 Total: 10.67 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -2.79 Total: -15.02 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.58 Total: -41.53 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.48 Total: -2.59 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -25.39 -6.74 -32.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084362930.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.914 kcal (2) G-P(sol) polarization free energy of solvation -25.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds