Wall clock time and date at job start Mon Mar 30 2020 03:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86790 * 120.00360 * 2 1 4 4 H 1.48502 * 109.47245 * 270.00124 * 3 2 1 5 5 H 1.48501 * 109.47356 * 30.00052 * 3 2 1 6 6 H 1.48499 * 109.47321 * 150.00192 * 3 2 1 7 7 C 1.37876 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00356 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47122 * 60.00596 * 9 7 2 11 11 N 1.46906 * 109.47167 * 300.00384 * 9 7 2 12 12 C 1.50697 * 109.47576 * 180.02562 * 9 7 2 13 13 C 1.38270 * 119.97416 * 79.72722 * 12 9 7 14 14 C 1.38216 * 120.05986 * 179.77257 * 13 12 9 15 15 C 1.38320 * 120.01105 * 0.50450 * 14 13 12 16 16 Cl 1.73603 * 120.02054 * 179.77059 * 15 14 13 17 17 C 1.38544 * 119.95351 * 359.74538 * 15 14 13 18 18 F 1.35097 * 120.03231 * 180.02562 * 17 15 14 19 19 C 1.38194 * 119.97702 * 260.00244 * 12 9 7 20 20 H 0.97005 * 119.99198 * 359.97438 * 1 2 3 21 21 H 1.00896 * 111.00309 * 299.99562 * 11 9 7 22 22 H 1.00902 * 110.99923 * 63.95725 * 11 9 7 23 23 H 1.07997 * 119.96880 * 359.97438 * 13 12 9 24 24 H 1.08003 * 119.99063 * 180.22808 * 14 13 12 25 25 H 1.07994 * 120.00559 * 359.97438 * 19 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4068 -2.5772 1.1992 12 6 2.2301 -3.6447 -0.0005 13 6 2.8414 -4.0310 1.1780 14 6 3.7361 -5.0844 1.1809 15 6 4.0290 -5.7467 0.0024 16 17 5.1573 -7.0660 0.0047 17 6 3.4207 -5.3567 -1.1797 18 9 3.7052 -6.0027 -2.3316 19 6 2.5208 -4.3046 -1.1794 20 1 -0.4849 0.8402 0.0004 21 1 0.9650 -2.5260 2.0381 22 1 -0.3006 -1.8577 1.1910 23 1 2.6169 -3.5112 2.0977 24 1 4.2101 -5.3876 2.1028 25 1 2.0461 -3.9997 -2.1003 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084362930.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:56 Heat of formation + Delta-G solvation = -53.541618 kcal Electronic energy + Delta-G solvation = -13355.559656 eV Core-core repulsion = 10694.106808 eV Total energy + Delta-G solvation = -2661.452848 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.97288 -40.25737 -37.68942 -36.35445 -33.50941 -31.85912 -30.60264 -27.96606 -24.93956 -23.89662 -21.86750 -18.69885 -18.46118 -17.56647 -17.29082 -16.76743 -16.72260 -16.01784 -14.88169 -14.86431 -14.53009 -14.17092 -13.94209 -13.41569 -13.24389 -12.93035 -12.63414 -12.57256 -12.34263 -11.92611 -11.85317 -11.54926 -10.72156 -9.91594 -9.53017 -9.18512 -8.14354 -6.40052 0.08503 0.19459 1.01124 1.38966 1.42403 1.50909 2.34879 2.60897 3.03027 3.10885 3.71332 3.95719 4.26378 4.35717 4.64086 4.68837 4.90915 4.94771 5.15623 5.34180 5.63455 5.74017 5.84541 6.02696 6.61374 6.88617 7.11493 7.36921 8.80506 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.042236 B = 0.006742 C = 0.006677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.780282 B = 4152.281601 C = 4192.280734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.026 3.974 3 Si 0.958 3.042 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.560 4.560 8 H 0.051 0.949 9 C 0.241 3.759 10 H 0.018 0.982 11 N -0.842 5.842 12 C -0.013 4.013 13 C -0.108 4.108 14 C -0.073 4.073 15 C -0.094 4.094 16 Cl -0.053 7.053 17 C 0.098 3.902 18 F -0.137 7.137 19 C -0.157 4.157 20 H 0.269 0.731 21 H 0.323 0.677 22 H 0.348 0.652 23 H 0.144 0.856 24 H 0.170 0.830 25 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.976 -8.392 2.426 11.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.175 4.175 3 Si 0.784 3.216 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.600 4.600 8 H 0.070 0.930 9 C 0.131 3.869 10 H 0.036 0.964 11 N -0.371 5.371 12 C -0.014 4.014 13 C -0.127 4.127 14 C -0.091 4.091 15 C -0.122 4.122 16 Cl -0.025 7.025 17 C 0.078 3.922 18 F -0.115 7.115 19 C -0.177 4.177 20 H 0.078 0.922 21 H 0.133 0.867 22 H 0.163 0.837 23 H 0.162 0.838 24 H 0.187 0.813 25 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.706 -9.152 2.102 11.539 hybrid contribution 0.650 1.791 -0.402 1.947 sum 7.356 -7.361 1.700 10.544 Atomic orbital electron populations 1.69833 1.06903 1.28134 1.50362 1.25689 0.95689 1.02224 0.93856 0.85556 0.78736 0.79229 0.78099 1.20589 1.20652 1.19407 1.21980 0.93490 0.91947 1.52572 0.93049 1.17847 0.89032 0.88678 0.91346 0.96369 1.59490 1.18101 1.55561 1.03958 1.20284 0.94863 0.93797 0.92476 1.21130 0.96098 0.96752 0.98682 1.21182 0.96886 0.94099 0.96924 1.20924 1.00008 0.96777 0.94487 1.98343 1.59455 1.45811 1.98851 1.17399 0.99072 0.94547 0.81220 1.91473 1.92425 1.80233 1.47412 1.21021 1.00098 0.96254 1.00318 0.92199 0.86683 0.83683 0.83792 0.81289 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.29 11.54 21.45 0.25 -48.04 15 2 C 0.03 1.34 5.38 84.65 0.46 1.80 15 3 Si 0.96 41.00 29.54 68.60 2.03 43.03 15 4 H -0.28 -11.99 7.11 99.48 0.71 -11.28 15 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15 6 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 7 C -0.56 -28.50 8.70 25.60 0.22 -28.28 15 8 H 0.05 2.63 7.74 -2.91 -0.02 2.61 15 9 C 0.24 11.38 2.95 43.42 0.13 11.51 15 10 H 0.02 0.97 8.00 -2.39 -0.02 0.95 15 11 N -0.84 -37.41 9.02 -174.95 -1.58 -38.98 15 12 C -0.01 -0.53 4.89 -19.87 -0.10 -0.63 15 13 C -0.11 -3.63 9.28 22.27 0.21 -3.42 15 14 C -0.07 -2.06 9.83 22.28 0.22 -1.84 15 15 C -0.09 -2.89 6.33 22.36 0.14 -2.74 15 16 Cl -0.05 -1.41 28.62 -2.72 -0.08 -1.48 15 17 C 0.10 3.35 7.28 22.39 0.16 3.52 15 18 F -0.14 -4.62 16.84 44.97 0.76 -3.86 15 19 C -0.16 -5.95 9.65 22.31 0.22 -5.73 15 20 H 0.27 13.56 8.31 -92.70 -0.77 12.79 15 21 H 0.32 13.09 7.34 -89.70 -0.66 12.43 15 22 H 0.35 16.86 7.08 -89.69 -0.63 16.22 15 23 H 0.14 4.51 6.67 -2.91 -0.02 4.49 15 24 H 0.17 3.57 8.06 -2.91 -0.02 3.55 15 25 H 0.14 5.04 8.04 -2.91 -0.02 5.02 15 Total: -1.00 -53.01 242.39 2.98 -50.03 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: -0.05 Total: 25.13 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 1.65 Total: -25.82 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -1.33 Total: -87.03 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.76 Total: -3.86 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.48 kcal Total: -53.01 2.98 -50.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084362930.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.507 kcal (2) G-P(sol) polarization free energy of solvation -53.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds