Wall clock time and date at job start Mon Mar 30 2020 03:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99970 * 2 1 4 4 O 1.42895 * 109.47262 * 78.56541 * 3 2 1 5 5 C 1.42895 * 114.00359 * 284.53619 * 4 3 2 6 6 C 1.50697 * 109.47243 * 198.57197 * 3 2 1 7 7 C 1.34852 * 122.10045 * 209.99828 * 6 3 2 8 8 S 1.71043 * 109.23424 * 179.97438 * 7 6 3 9 9 C 1.76080 * 90.39103 * 359.97438 * 8 7 6 10 10 C 1.39906 * 125.56019 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00502 * 173.02541 * 10 9 8 12 12 C 1.40256 * 119.99660 * 353.03224 * 10 9 8 13 13 N 1.30690 * 119.99929 * 6.89711 * 12 10 9 14 14 Si 1.86802 * 119.99773 * 186.90106 * 12 10 9 15 15 H 1.48500 * 109.47053 * 94.97354 * 14 12 10 16 16 H 1.48497 * 109.46888 * 214.97194 * 14 12 10 17 17 H 1.48495 * 109.47267 * 334.97548 * 14 12 10 18 18 N 1.30456 * 122.10291 * 29.97349 * 6 3 2 19 19 H 1.09007 * 109.46982 * 48.96870 * 1 2 3 20 20 H 1.09005 * 109.46701 * 168.96175 * 1 2 3 21 21 H 1.08992 * 109.47737 * 288.96698 * 1 2 3 22 22 H 1.09003 * 109.46568 * 318.57021 * 3 2 1 23 23 H 1.09008 * 109.47282 * 195.30491 * 5 4 3 24 24 H 1.09005 * 109.46787 * 315.29827 * 5 4 3 25 25 H 1.08998 * 109.47593 * 75.30492 * 5 4 3 26 26 H 1.08004 * 125.38599 * 0.02562 * 7 6 3 27 27 H 0.97006 * 120.00043 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.9600 1.8493 1.3205 5 6 0.6627 2.3009 1.7142 6 6 3.4449 1.2167 -0.4525 7 6 4.3871 2.0797 -0.0213 8 16 5.8881 1.6791 -0.7369 9 6 5.1349 0.3385 -1.5948 10 6 5.7889 -0.5414 -2.4640 11 1 5.2663 -1.4014 -2.8560 12 6 7.1234 -0.3065 -2.8263 13 7 7.7976 0.6536 -2.2504 14 14 7.9369 -1.3660 -4.1322 15 1 7.8309 -0.6935 -5.4519 16 1 9.3686 -1.5613 -3.7897 17 1 7.2580 -2.6853 -4.1929 18 7 3.8536 0.2998 -1.2857 19 1 -0.3633 0.6747 -0.7753 20 1 -0.3633 -1.0087 -0.1968 21 1 -0.3634 0.3340 0.9718 22 1 1.4540 1.9508 -0.6800 23 1 0.7509 2.9354 2.5961 24 1 0.2138 2.8704 0.9003 25 1 0.0337 1.4415 1.9464 26 1 4.2205 2.8945 0.6678 27 1 8.7204 0.8162 -2.5012 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085080459.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:02 Heat of formation + Delta-G solvation = -84.822915 kcal Electronic energy + Delta-G solvation = -13795.168284 eV Core-core repulsion = 11257.862988 eV Total energy + Delta-G solvation = -2537.305295 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.58134 -38.95907 -36.95009 -35.97802 -31.83191 -29.36470 -28.24828 -26.84006 -26.15217 -23.69138 -20.31012 -19.65633 -18.45935 -18.25304 -17.44290 -16.85585 -16.46224 -15.38225 -15.27245 -14.95555 -14.48825 -14.42025 -14.09973 -13.67003 -13.38466 -13.05673 -12.83496 -12.41970 -12.30213 -11.98497 -11.40114 -11.39094 -11.04999 -10.67262 -9.89725 -9.76828 -9.18689 -8.89860 -6.72320 0.58090 1.41573 1.45694 1.53050 1.60784 1.91938 2.12013 2.20514 2.71036 2.94552 3.18091 3.73230 4.04898 4.20749 4.38233 4.38928 4.58770 4.66117 4.81907 4.91669 4.97364 5.20667 5.57055 5.93187 6.08143 6.17834 6.40397 6.43049 7.77085 8.02976 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.048942 B = 0.007398 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.970486 B = 3783.967683 C = 4310.899787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.405 6.405 3 C 0.332 3.668 4 O -0.410 6.410 5 C 0.010 3.990 6 C 0.091 3.909 7 C -0.442 4.442 8 S 0.097 5.903 9 C 0.170 3.830 10 C -0.398 4.398 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.797 5.797 14 Si 1.021 2.979 15 H -0.256 1.256 16 H -0.256 1.256 17 H -0.255 1.255 18 N -0.609 5.609 19 H 0.054 0.946 20 H 0.097 0.903 21 H 0.066 0.934 22 H 0.073 0.927 23 H 0.104 0.896 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.147 0.853 27 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.271 1.467 0.698 6.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.325 6.325 3 C 0.235 3.765 4 O -0.330 6.330 5 C -0.085 4.085 6 C -0.048 4.048 7 C -0.586 4.586 8 S 0.356 5.644 9 C -0.082 4.082 10 C -0.440 4.440 11 H 0.120 0.880 12 C -0.199 4.199 13 N -0.425 5.425 14 Si 0.839 3.161 15 H -0.180 1.180 16 H -0.180 1.180 17 H -0.178 1.178 18 N -0.333 5.333 19 H 0.073 0.927 20 H 0.115 0.885 21 H 0.084 0.916 22 H 0.090 0.910 23 H 0.122 0.878 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.165 0.835 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.094 1.507 0.716 5.360 hybrid contribution -1.127 0.175 0.027 1.141 sum -6.221 1.682 0.742 6.487 Atomic orbital electron populations 1.23370 0.79647 1.04237 1.01510 1.88181 1.21549 1.29000 1.93771 1.21098 0.89522 0.82346 0.83538 1.88053 1.32430 1.79305 1.33235 1.23358 0.83781 0.99744 1.01595 1.19452 0.94884 0.93576 0.96935 1.25858 1.01454 1.13026 1.18284 1.83914 1.08078 1.30934 1.41503 1.24451 0.90014 0.96499 0.97249 1.19373 0.96668 1.07769 1.20234 0.87951 1.27250 0.96482 0.96876 0.99316 1.68846 1.12337 1.25806 1.35493 0.84576 0.77467 0.78019 0.76069 1.18047 1.18000 1.17841 1.67186 1.12913 1.28610 1.24615 0.92745 0.88470 0.91606 0.90983 0.87794 0.92324 0.92069 0.83512 0.87371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 10.34 113.37 1.17 1.39 15 2 O -0.40 -17.51 10.34 -126.21 -1.31 -18.81 15 3 C 0.33 14.58 3.33 71.24 0.24 14.82 15 4 O -0.41 -16.25 9.91 -126.21 -1.25 -17.50 15 5 C 0.01 0.27 10.14 113.37 1.15 1.42 15 6 C 0.09 4.93 6.39 41.98 0.27 5.20 15 7 C -0.44 -23.32 10.34 67.04 0.69 -22.63 15 8 S 0.10 5.25 20.22 -56.49 -1.14 4.10 15 9 C 0.17 9.87 7.13 85.09 0.61 10.48 15 10 C -0.40 -21.44 9.44 23.16 0.22 -21.22 15 11 H 0.10 5.37 7.86 -2.91 -0.02 5.35 15 12 C 0.02 1.00 5.49 85.35 0.47 1.47 15 13 N -0.80 -38.26 10.72 21.88 0.23 -38.03 15 14 Si 1.02 34.77 29.57 68.60 2.03 36.80 15 15 H -0.26 -8.35 7.11 99.48 0.71 -7.64 15 16 H -0.26 -8.02 7.11 99.48 0.71 -7.32 15 17 H -0.25 -8.58 7.11 99.48 0.71 -7.88 15 18 N -0.61 -35.87 10.37 -183.45 -1.90 -37.77 15 19 H 0.05 1.35 7.86 -2.38 -0.02 1.33 15 20 H 0.10 2.43 8.14 -2.38 -0.02 2.41 15 21 H 0.07 1.55 5.06 -2.39 -0.01 1.54 15 22 H 0.07 2.83 7.46 -2.39 -0.02 2.81 15 23 H 0.10 2.19 8.14 -2.38 -0.02 2.17 15 24 H 0.06 1.28 7.80 -2.38 -0.02 1.26 15 25 H 0.06 1.39 5.39 -2.39 -0.01 1.38 15 26 H 0.15 7.17 7.87 -2.91 -0.02 7.15 15 27 H 0.31 13.07 8.29 -92.70 -0.77 12.30 15 Total: -1.00 -68.09 248.95 2.66 -65.42 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.19 Total: 14.85 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 4.82 Total: -9.07 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -1.67 Total: -75.80 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -2.56 Total: -36.31 kcal Atomic # 14 Polarization: 34.77 SS G_CDS: 2.03 Total: 36.80 kcal Atomic # 16 Polarization: 5.25 SS G_CDS: -1.14 Total: 4.10 kcal Total: -68.09 2.66 -65.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085080459.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.399 kcal (2) G-P(sol) polarization free energy of solvation -68.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds