Wall clock time and date at job start Mon Mar 30 2020 02:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46892 * 111.00390 * 2 1 4 4 C 1.46905 * 111.00073 * 123.95333 * 2 1 3 5 5 C 1.53004 * 109.46781 * 66.04197 * 4 2 1 6 6 H 1.08998 * 110.36668 * 292.64840 * 5 4 2 7 7 C 1.54385 * 110.40730 * 170.17538 * 5 4 2 8 8 C 1.54258 * 105.05599 * 217.36872 * 7 5 4 9 9 H 1.09005 * 110.32449 * 240.99866 * 8 7 5 10 10 O 1.42904 * 110.32267 * 118.89809 * 8 7 5 11 11 C 1.54378 * 105.06502 * 0.02562 * 8 7 5 12 12 N 1.48554 * 104.59426 * 23.85028 * 11 8 7 13 13 C 1.46901 * 111.00208 * 200.96461 * 12 11 8 14 14 C 1.50701 * 109.46921 * 285.41849 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47094 * 90.00289 * 18 16 14 20 20 H 1.48505 * 109.47195 * 210.00171 * 18 16 14 21 21 H 1.48493 * 109.47449 * 330.00136 * 18 16 14 22 22 H 1.09007 * 109.46542 * 296.05070 * 1 2 3 23 23 H 1.08997 * 109.47166 * 56.04394 * 1 2 3 24 24 H 1.08998 * 109.47130 * 176.04973 * 1 2 3 25 25 H 1.09006 * 109.47671 * 183.95712 * 3 2 1 26 26 H 1.09002 * 109.47257 * 303.95345 * 3 2 1 27 27 H 1.08997 * 109.47823 * 63.95173 * 3 2 1 28 28 H 1.09003 * 109.46981 * 306.04243 * 4 2 1 29 29 H 1.08998 * 109.47225 * 186.04507 * 4 2 1 30 30 H 1.09002 * 110.32651 * 336.26239 * 7 5 4 31 31 H 1.08990 * 110.32610 * 98.47446 * 7 5 4 32 32 H 0.96705 * 114.00112 * 179.97438 * 10 8 7 33 33 H 1.09002 * 110.40560 * 265.07483 * 11 8 7 34 34 H 1.08997 * 110.41571 * 142.63342 * 11 8 7 35 35 H 1.09002 * 109.47401 * 165.41877 * 13 12 11 36 36 H 1.09001 * 109.46874 * 45.41889 * 13 12 11 37 37 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6313 -2.2426 0.9704 6 1 0.5539 -2.3802 1.0606 7 6 2.3757 -3.1023 2.0146 8 6 2.7444 -4.4036 1.2729 9 1 2.2743 -5.2606 1.7554 10 8 4.1632 -4.5707 1.2391 11 6 2.1923 -4.2206 -0.1572 12 7 2.1113 -2.7488 -0.3416 13 6 1.1697 -2.4037 -1.4150 14 6 1.7962 -2.7109 -2.7508 15 1 2.7939 -3.1217 -2.7976 16 6 1.0953 -2.4683 -3.9131 17 7 -0.1198 -1.9685 -3.8560 18 14 1.8717 -2.8497 -5.5687 19 1 1.5472 -4.2455 -5.9579 20 1 1.3400 -1.9141 -6.5921 21 1 3.3452 -2.6925 -5.4725 22 1 -0.3633 0.4514 0.9233 23 1 -0.3633 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0708 25 1 3.0829 1.3431 -0.0709 26 1 1.5899 1.9163 -0.8524 27 1 1.7045 1.8724 0.9232 28 1 1.5612 -0.3872 2.0629 29 1 3.0797 -0.6611 1.1757 30 1 3.2770 -2.5910 2.3528 31 1 1.7233 -3.3202 2.8600 32 1 4.4540 -5.3734 0.7849 33 1 1.2028 -4.6695 -0.2429 34 1 2.8738 -4.6582 -0.8867 35 1 0.9308 -1.3416 -1.3614 36 1 0.2567 -2.9878 -1.2990 37 1 -0.6127 -1.7976 -4.6738 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085082640.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:00 Heat of formation + Delta-G solvation = -49.232958 kcal Electronic energy + Delta-G solvation = -17152.089257 eV Core-core repulsion = 14542.959238 eV Total energy + Delta-G solvation = -2609.130019 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.50380 -38.08592 -36.36120 -34.83012 -32.28330 -30.45740 -28.51888 -28.10770 -26.58715 -24.17093 -22.82415 -21.59717 -20.84854 -18.37396 -17.94345 -17.18862 -16.71249 -16.29561 -16.04987 -15.68040 -15.22696 -14.73585 -14.34685 -14.18766 -13.51096 -13.30623 -13.09943 -13.06272 -12.83583 -12.74233 -12.58626 -12.46374 -12.28776 -12.20811 -11.92332 -11.65871 -11.44086 -11.04954 -10.75673 -10.41014 -9.05802 -8.85756 -8.08981 -6.13703 1.39516 1.41138 1.52535 2.45424 3.06352 3.23489 3.36915 3.56026 3.84888 3.89267 4.14022 4.26693 4.31963 4.44352 4.44949 4.60747 4.67635 4.74406 4.76974 4.79421 4.95369 5.02096 5.05841 5.08754 5.10580 5.23402 5.37562 5.67342 5.74828 6.22571 6.25200 6.32462 6.55480 6.74727 6.98166 7.02214 7.51907 9.01312 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.019751 B = 0.010736 C = 0.007776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.284222 B = 2607.517765 C = 3600.083342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.557 5.557 3 C 0.033 3.967 4 C 0.082 3.918 5 C 0.055 3.945 6 H 0.032 0.968 7 C -0.105 4.105 8 C 0.109 3.891 9 H 0.084 0.916 10 O -0.572 6.572 11 C 0.007 3.993 12 N -0.496 5.496 13 C 0.178 3.822 14 C -0.512 4.512 15 H 0.045 0.955 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.957 3.043 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.271 1.271 22 H 0.039 0.961 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.039 0.961 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.390 0.610 33 H 0.024 0.976 34 H 0.064 0.936 35 H 0.086 0.914 36 H -0.061 1.061 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.218 -0.019 12.171 12.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.281 5.281 3 C -0.115 4.115 4 C -0.046 4.046 5 C -0.054 4.054 6 H 0.050 0.950 7 C -0.143 4.143 8 C 0.050 3.950 9 H 0.102 0.898 10 O -0.380 6.380 11 C -0.122 4.122 12 N -0.220 5.220 13 C 0.052 3.948 14 C -0.550 4.550 15 H 0.063 0.937 16 C -0.194 4.194 17 N -0.572 5.572 18 Si 0.783 3.217 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.196 1.196 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.239 0.761 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.103 0.897 36 H -0.044 1.044 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.734 0.626 11.794 12.386 hybrid contribution -1.140 -0.754 -0.867 1.618 sum 2.594 -0.128 10.927 11.231 Atomic orbital electron populations 1.22276 0.87714 1.01228 0.99948 1.61870 1.07769 1.14525 1.43926 1.22307 1.00655 0.88008 1.00497 1.22034 1.00143 0.91682 0.90715 1.22738 0.96289 0.95491 0.90904 0.95032 1.22356 1.00846 0.94222 0.96892 1.22556 0.81400 0.98136 0.92953 0.89826 1.86476 1.21563 1.49410 1.80560 1.23753 0.98888 0.91510 0.98078 1.65307 1.46498 1.07182 1.03028 1.20224 0.87085 0.99098 0.88422 1.21465 1.00646 1.40675 0.92262 0.93710 1.25713 0.95459 0.95669 1.02515 1.70068 1.12159 1.46353 1.28585 0.85571 0.78710 0.77913 0.79505 1.20183 1.20722 1.19600 0.94228 0.92674 0.93350 0.91439 0.92194 0.94294 0.92975 0.90682 0.89757 0.88140 0.76054 0.95769 0.91718 0.89652 1.04398 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.32 7.89 127.69 1.01 2.33 16 2 N -0.56 -20.77 3.15 -948.84 -2.99 -23.76 16 3 C 0.03 1.00 9.57 127.69 1.22 2.22 16 4 C 0.08 2.69 4.67 86.30 0.40 3.10 16 5 C 0.06 1.98 2.30 45.06 0.10 2.08 16 6 H 0.03 1.19 6.83 -2.39 -0.02 1.18 16 7 C -0.10 -2.97 6.36 31.49 0.20 -2.77 16 8 C 0.11 3.22 4.42 31.49 0.14 3.36 16 9 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 10 O -0.57 -16.67 13.26 -148.98 -1.98 -18.64 16 11 C 0.01 0.26 5.86 86.45 0.51 0.77 16 12 N -0.50 -22.37 4.98 -861.17 -4.29 -26.66 16 13 C 0.18 9.70 3.52 85.56 0.30 10.00 16 14 C -0.51 -30.49 8.97 25.60 0.23 -30.26 16 15 H 0.04 2.70 7.81 -2.91 -0.02 2.67 16 16 C 0.00 0.21 5.46 84.66 0.46 0.68 16 17 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 18 Si 0.96 46.28 29.54 68.60 2.03 48.31 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 22 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 23 H 0.05 2.11 8.12 -2.39 -0.02 2.09 16 24 H 0.05 2.00 5.32 -2.39 -0.01 1.98 16 25 H 0.07 1.98 8.12 -2.38 -0.02 1.96 16 26 H 0.06 1.85 8.12 -2.39 -0.02 1.83 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.05 1.41 8.12 -2.39 -0.02 1.39 16 29 H 0.07 2.47 7.89 -2.39 -0.02 2.46 16 30 H 0.08 2.37 7.58 -2.39 -0.02 2.35 16 31 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.39 8.18 9.12 -74.05 -0.68 7.50 16 33 H 0.02 1.00 7.75 -2.39 -0.02 0.99 16 34 H 0.06 2.69 8.08 -2.39 -0.02 2.67 16 35 H 0.09 4.72 3.61 -2.39 -0.01 4.71 16 36 H -0.06 -3.71 7.77 -2.39 -0.02 -3.73 16 37 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -70.25 289.66 -2.00 -72.25 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.37 Total: 13.67 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 4.57 Total: -8.50 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -6.99 Total: -107.09 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -1.98 Total: -18.64 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -70.25 -2.00 -72.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085082640.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.020 kcal (2) G-P(sol) polarization free energy of solvation -70.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds