Wall clock time and date at job start Mon Mar 30 2020 02:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 110.99609 * 2 1 4 4 C 1.46909 * 110.99893 * 123.95071 * 2 1 3 5 5 C 1.53002 * 109.46735 * 74.70415 * 4 2 1 6 6 H 1.08997 * 110.72624 * 307.26828 * 5 4 2 7 7 C 1.54930 * 110.66849 * 70.37027 * 5 4 2 8 8 C 1.54598 * 102.92141 * 155.84551 * 7 5 4 9 9 H 1.09001 * 110.39062 * 219.08057 * 8 7 5 10 10 O 1.42900 * 110.30961 * 96.95945 * 8 7 5 11 11 C 1.53990 * 105.13875 * 338.04074 * 8 7 5 12 12 N 1.47896 * 107.05945 * 358.77410 * 11 8 7 13 13 C 1.46905 * 110.99963 * 145.84324 * 12 11 8 14 14 C 1.50698 * 109.47285 * 75.31971 * 13 12 11 15 15 H 1.08001 * 119.99612 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00175 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00170 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99925 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47507 * 60.00249 * 18 16 14 20 20 H 1.48506 * 109.46797 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47193 * 299.99929 * 18 16 14 22 22 H 1.09005 * 109.47171 * 290.79470 * 1 2 3 23 23 H 1.08999 * 109.47398 * 50.79570 * 1 2 3 24 24 H 1.09006 * 109.47059 * 170.79891 * 1 2 3 25 25 H 1.09010 * 109.46894 * 183.95302 * 3 2 1 26 26 H 1.08996 * 109.47434 * 303.94787 * 3 2 1 27 27 H 1.08997 * 109.47197 * 63.95735 * 3 2 1 28 28 H 1.09001 * 109.46902 * 314.70034 * 4 2 1 29 29 H 1.08995 * 109.46832 * 194.70190 * 4 2 1 30 30 H 1.09002 * 110.72831 * 37.48471 * 7 5 4 31 31 H 1.09004 * 110.72572 * 274.20495 * 7 5 4 32 32 H 0.96691 * 114.00257 * 182.83008 * 10 8 7 33 33 H 1.09000 * 109.91496 * 118.13017 * 11 8 7 34 34 H 1.09000 * 109.91930 * 239.21961 * 11 8 7 35 35 H 1.09004 * 109.47108 * 195.32400 * 13 12 11 36 36 H 1.08995 * 109.46952 * 315.31951 * 13 12 11 37 37 H 0.97000 * 120.00327 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1377 5 6 1.8229 -2.2622 0.8686 6 1 0.7896 -2.4906 0.6075 7 6 2.7863 -2.7312 -0.2505 8 6 2.9434 -4.2417 0.0392 9 1 3.9733 -4.5558 -0.1303 10 8 2.0530 -4.9996 -0.7823 11 6 2.5718 -4.4071 1.5244 12 7 2.2548 -3.0596 2.0451 13 6 1.1919 -3.1228 3.0571 14 6 1.7574 -3.6594 4.3468 15 1 2.8020 -3.9263 4.4085 16 6 0.9414 -3.8086 5.4481 17 7 -0.3306 -3.4830 5.3730 18 14 1.6426 -4.4730 7.0469 19 1 2.7267 -3.5765 7.5225 20 1 0.5680 -4.5370 8.0699 21 1 2.1904 -5.8344 6.8192 22 1 -0.3634 0.3649 0.9608 23 1 -0.3634 0.6496 -0.7963 24 1 -0.3633 -1.0145 -0.1643 25 1 3.0828 1.3433 -0.0709 26 1 1.5898 1.9163 -0.8524 27 1 1.7043 1.8723 0.9233 28 1 1.4508 -0.4941 2.0419 29 1 3.0536 -0.5401 1.2692 30 1 3.7465 -2.2214 -0.1717 31 1 2.3429 -2.5711 -1.2333 32 1 2.0763 -5.9514 -0.6136 33 1 1.7012 -5.0561 1.6193 34 1 3.4127 -4.8319 2.0726 35 1 0.7897 -2.1236 3.2246 36 1 0.3962 -3.7807 2.7077 37 1 -0.9046 -3.5876 6.1479 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085082643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:02 Heat of formation + Delta-G solvation = -39.610934 kcal Electronic energy + Delta-G solvation = -16731.759303 eV Core-core repulsion = 14123.046527 eV Total energy + Delta-G solvation = -2608.712777 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.00271 -36.87721 -35.24688 -32.83820 -30.44207 -29.26986 -27.37722 -26.28241 -25.26149 -22.46447 -21.60181 -20.14917 -19.33579 -17.16278 -16.25977 -15.47929 -15.18595 -14.93035 -14.55045 -13.99685 -13.75418 -13.39184 -13.11144 -12.71314 -12.28093 -12.20237 -11.90022 -11.51229 -11.46978 -11.35825 -11.08887 -10.86652 -10.63916 -10.57556 -10.35652 -10.14436 -9.85355 -9.52270 -9.21539 -8.42964 -8.10668 -7.35855 -6.03062 -4.04718 3.32402 3.36381 3.39371 4.10997 4.43040 4.55495 5.03572 5.12822 5.27210 5.32534 5.36849 5.49595 5.53655 5.59789 5.69572 5.81275 5.94229 5.95420 6.04745 6.13992 6.18786 6.36136 6.43032 6.48135 6.56331 6.65391 7.10135 7.26064 7.30212 7.32017 7.79363 7.91472 8.02236 8.17307 8.50862 9.03047 9.59566 11.07648 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.008137 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.394156 B = 3440.353834 C = 4259.474632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.547 5.547 3 C 0.027 3.973 4 C 0.071 3.929 5 C 0.072 3.928 6 H 0.047 0.953 7 C -0.095 4.095 8 C 0.084 3.916 9 H 0.057 0.943 10 O -0.569 6.569 11 C 0.021 3.979 12 N -0.509 5.509 13 C 0.187 3.813 14 C -0.506 4.506 15 H 0.062 0.938 16 C 0.054 3.946 17 N -0.900 5.900 18 Si 0.898 3.102 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.277 1.277 22 H 0.027 0.973 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.023 0.977 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.373 0.627 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.028 0.972 36 H -0.007 1.007 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.445 3.484 -10.678 12.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.271 5.271 3 C -0.121 4.121 4 C -0.056 4.056 5 C -0.037 4.037 6 H 0.065 0.935 7 C -0.133 4.133 8 C 0.025 3.975 9 H 0.075 0.925 10 O -0.374 6.374 11 C -0.108 4.108 12 N -0.234 5.234 13 C 0.061 3.939 14 C -0.545 4.545 15 H 0.080 0.920 16 C -0.147 4.147 17 N -0.539 5.539 18 Si 0.726 3.274 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.203 1.203 22 H 0.045 0.955 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.220 0.780 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.011 0.989 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.741 4.093 -10.958 12.622 hybrid contribution -0.678 -0.906 1.710 2.050 sum 4.063 3.187 -9.248 10.592 Atomic orbital electron populations 1.22419 0.87656 1.02444 1.00008 1.61923 1.07868 1.13199 1.44146 1.22349 1.00562 0.89181 1.00048 1.22000 1.00246 0.92744 0.90648 1.22560 0.97144 0.93104 0.90938 0.93512 1.22375 0.99959 0.91851 0.99120 1.22867 0.91782 0.92943 0.89936 0.92463 1.86514 1.65506 1.22324 1.63059 1.23418 1.01077 0.93105 0.93154 1.64722 1.41576 1.08753 1.08388 1.19893 0.87711 0.96787 0.89494 1.21109 0.96059 1.42156 0.95133 0.91996 1.24999 0.94819 0.95822 0.99029 1.69951 1.04691 1.48703 1.30569 0.86556 0.78508 0.79448 0.82863 1.20183 1.21359 1.20298 0.95467 0.91970 0.91239 0.91532 0.91830 0.95853 0.93830 0.90529 0.90367 0.90519 0.77989 0.93227 0.90743 0.95407 0.98881 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.41 60.07 0.57 0.90 16 2 N -0.55 -8.19 4.85 -251.24 -1.22 -9.41 16 3 C 0.03 0.33 9.51 60.06 0.57 0.90 16 4 C 0.07 1.24 4.67 -3.82 -0.02 1.23 16 5 C 0.07 1.36 2.35 -65.79 -0.15 1.20 16 6 H 0.05 0.97 6.73 -51.93 -0.35 0.62 16 7 C -0.10 -1.56 6.15 -24.87 -0.15 -1.71 16 8 C 0.08 1.35 4.36 -25.38 -0.11 1.24 16 9 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 10 O -0.57 -8.93 13.25 -35.23 -0.47 -9.40 16 11 C 0.02 0.42 6.15 -2.76 -0.02 0.40 16 12 N -0.51 -11.16 4.91 -224.06 -1.10 -12.26 16 13 C 0.19 4.94 4.53 -4.97 -0.02 4.91 16 14 C -0.51 -14.37 8.99 -34.44 -0.31 -14.68 16 15 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 16 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 18 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H 0.03 0.40 7.98 -51.93 -0.41 -0.01 16 23 H 0.06 0.74 8.03 -51.93 -0.42 0.33 16 24 H 0.07 1.06 6.93 -51.93 -0.36 0.70 16 25 H 0.07 0.76 8.07 -51.92 -0.42 0.34 16 26 H 0.06 0.67 8.06 -51.93 -0.42 0.25 16 27 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.04 0.86 6.95 -51.93 -0.36 0.50 16 29 H 0.08 1.29 7.78 -51.93 -0.40 0.88 16 30 H 0.08 1.19 7.96 -51.93 -0.41 0.78 16 31 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 32 H 0.37 4.28 9.11 45.56 0.41 4.70 16 33 H 0.05 1.04 7.30 -51.93 -0.38 0.66 16 34 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.03 0.79 7.06 -51.93 -0.37 0.42 16 36 H -0.01 -0.19 7.65 -51.93 -0.40 -0.59 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 296.97 15.07 4.48 4.48 Total: -1.00 -31.15 296.97 -7.86 -39.01 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.52 Total: 1.17 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 0.25 Total: -4.14 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -1.58 Total: -47.87 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.47 Total: -9.40 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.15 -7.86 -39.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085082643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.602 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds