Wall clock time and date at job start Mon Mar 30 2020 02:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 110.99609 * 2 1 4 4 C 1.46909 * 110.99893 * 123.95071 * 2 1 3 5 5 C 1.53002 * 109.46735 * 74.70415 * 4 2 1 6 6 H 1.08997 * 110.72624 * 307.26828 * 5 4 2 7 7 C 1.54930 * 110.66849 * 70.37027 * 5 4 2 8 8 C 1.54598 * 102.92141 * 155.84551 * 7 5 4 9 9 H 1.09001 * 110.39062 * 219.08057 * 8 7 5 10 10 O 1.42900 * 110.30961 * 96.95945 * 8 7 5 11 11 C 1.53990 * 105.13875 * 338.04074 * 8 7 5 12 12 N 1.47896 * 107.05945 * 358.77410 * 11 8 7 13 13 C 1.46905 * 110.99963 * 145.84324 * 12 11 8 14 14 C 1.50698 * 109.47285 * 75.31971 * 13 12 11 15 15 H 1.08001 * 119.99612 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00175 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00170 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99925 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47507 * 60.00249 * 18 16 14 20 20 H 1.48506 * 109.46797 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47193 * 299.99929 * 18 16 14 22 22 H 1.09005 * 109.47171 * 290.79470 * 1 2 3 23 23 H 1.08999 * 109.47398 * 50.79570 * 1 2 3 24 24 H 1.09006 * 109.47059 * 170.79891 * 1 2 3 25 25 H 1.09010 * 109.46894 * 183.95302 * 3 2 1 26 26 H 1.08996 * 109.47434 * 303.94787 * 3 2 1 27 27 H 1.08997 * 109.47197 * 63.95735 * 3 2 1 28 28 H 1.09001 * 109.46902 * 314.70034 * 4 2 1 29 29 H 1.08995 * 109.46832 * 194.70190 * 4 2 1 30 30 H 1.09002 * 110.72831 * 37.48471 * 7 5 4 31 31 H 1.09004 * 110.72572 * 274.20495 * 7 5 4 32 32 H 0.96691 * 114.00257 * 182.83008 * 10 8 7 33 33 H 1.09000 * 109.91496 * 118.13017 * 11 8 7 34 34 H 1.09000 * 109.91930 * 239.21961 * 11 8 7 35 35 H 1.09004 * 109.47108 * 195.32400 * 13 12 11 36 36 H 1.08995 * 109.46952 * 315.31951 * 13 12 11 37 37 H 0.97000 * 120.00327 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1377 5 6 1.8229 -2.2622 0.8686 6 1 0.7896 -2.4906 0.6075 7 6 2.7863 -2.7312 -0.2505 8 6 2.9434 -4.2417 0.0392 9 1 3.9733 -4.5558 -0.1303 10 8 2.0530 -4.9996 -0.7823 11 6 2.5718 -4.4071 1.5244 12 7 2.2548 -3.0596 2.0451 13 6 1.1919 -3.1228 3.0571 14 6 1.7574 -3.6594 4.3468 15 1 2.8020 -3.9263 4.4085 16 6 0.9414 -3.8086 5.4481 17 7 -0.3306 -3.4830 5.3730 18 14 1.6426 -4.4730 7.0469 19 1 2.7267 -3.5765 7.5225 20 1 0.5680 -4.5370 8.0699 21 1 2.1904 -5.8344 6.8192 22 1 -0.3634 0.3649 0.9608 23 1 -0.3634 0.6496 -0.7963 24 1 -0.3633 -1.0145 -0.1643 25 1 3.0828 1.3433 -0.0709 26 1 1.5898 1.9163 -0.8524 27 1 1.7043 1.8723 0.9233 28 1 1.4508 -0.4941 2.0419 29 1 3.0536 -0.5401 1.2692 30 1 3.7465 -2.2214 -0.1717 31 1 2.3429 -2.5711 -1.2333 32 1 2.0763 -5.9514 -0.6136 33 1 1.7012 -5.0561 1.6193 34 1 3.4127 -4.8319 2.0726 35 1 0.7897 -2.1236 3.2246 36 1 0.3962 -3.7807 2.7077 37 1 -0.9046 -3.5876 6.1479 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085082643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:01 Heat of formation + Delta-G solvation = -65.458366 kcal Electronic energy + Delta-G solvation = -16732.880132 eV Core-core repulsion = 14123.046527 eV Total energy + Delta-G solvation = -2609.833605 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.50162 -38.11335 -36.73199 -34.90771 -32.17811 -30.69909 -28.49239 -28.25684 -26.68791 -24.35174 -22.94389 -21.67523 -20.87849 -18.48140 -18.44839 -17.05631 -16.53288 -16.39751 -16.16565 -15.49187 -15.08501 -14.89332 -14.71211 -14.42286 -13.89051 -13.72948 -13.34917 -12.97407 -12.92070 -12.70949 -12.58169 -12.50982 -12.35037 -12.16525 -12.01981 -11.78586 -11.52666 -11.27530 -10.90157 -10.63135 -9.39540 -9.15889 -8.23676 -6.35203 1.38523 1.42251 1.50322 2.37245 2.81579 3.08100 3.32740 3.55056 3.70835 3.92679 4.03719 4.23206 4.27413 4.41112 4.44718 4.48954 4.61469 4.76230 4.79951 4.86015 4.94504 4.95395 5.01179 5.02585 5.07688 5.10419 5.22651 5.27127 5.61421 5.93530 6.03125 6.09363 6.23478 6.48416 6.80281 6.88299 7.35090 8.87282 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.022334 B = 0.008137 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.394156 B = 3440.353834 C = 4259.474632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.547 5.547 3 C 0.025 3.975 4 C 0.082 3.918 5 C 0.070 3.930 6 H 0.020 0.980 7 C -0.086 4.086 8 C 0.096 3.904 9 H 0.093 0.907 10 O -0.581 6.581 11 C 0.018 3.982 12 N -0.515 5.515 13 C 0.208 3.792 14 C -0.525 4.525 15 H 0.064 0.936 16 C 0.000 4.000 17 N -0.936 5.936 18 Si 0.973 3.027 19 H -0.267 1.267 20 H -0.283 1.283 21 H -0.266 1.266 22 H 0.013 0.987 23 H 0.092 0.908 24 H 0.052 0.948 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.018 0.982 28 H 0.008 0.992 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.392 0.608 33 H 0.026 0.974 34 H 0.080 0.920 35 H -0.002 1.002 36 H -0.043 1.043 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.370 3.485 -11.424 13.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.271 5.271 3 C -0.122 4.122 4 C -0.046 4.046 5 C -0.039 4.039 6 H 0.038 0.962 7 C -0.123 4.123 8 C 0.037 3.963 9 H 0.111 0.889 10 O -0.389 6.389 11 C -0.111 4.111 12 N -0.240 5.240 13 C 0.081 3.919 14 C -0.563 4.563 15 H 0.082 0.918 16 C -0.198 4.198 17 N -0.577 5.577 18 Si 0.797 3.203 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.190 1.190 22 H 0.031 0.969 23 H 0.111 0.889 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.037 0.963 28 H 0.026 0.974 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.242 0.758 33 H 0.044 0.956 34 H 0.098 0.902 35 H 0.016 0.984 36 H -0.026 1.026 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.679 4.088 -11.730 14.104 hybrid contribution -1.325 -0.891 1.883 2.469 sum 5.354 3.197 -9.847 11.655 Atomic orbital electron populations 1.22426 0.87549 1.02067 1.00361 1.61946 1.08031 1.14808 1.42296 1.22471 1.01440 0.87482 1.00848 1.21833 1.00369 0.92188 0.90243 1.22624 0.96568 0.93828 0.90878 0.96208 1.22356 0.99931 0.92224 0.97823 1.22797 0.93427 0.92966 0.87138 0.88900 1.86476 1.65742 1.24046 1.62599 1.23520 1.00216 0.91256 0.96105 1.64652 1.39379 1.10764 1.09187 1.19469 0.87862 0.93909 0.90679 1.21423 0.96241 1.42504 0.96110 0.91788 1.25982 0.95045 0.95804 1.02994 1.70095 1.06189 1.49569 1.31809 0.85388 0.77926 0.79174 0.77851 1.19180 1.20812 1.19037 0.96867 0.88927 0.92930 0.90248 0.89484 0.96305 0.97370 0.89489 0.88346 0.89971 0.75837 0.95559 0.90206 0.98433 1.02556 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 9.41 127.69 1.20 1.90 16 2 N -0.55 -15.91 4.85 -948.80 -4.60 -20.51 16 3 C 0.03 0.57 9.51 127.69 1.21 1.78 16 4 C 0.08 2.90 4.67 86.30 0.40 3.30 16 5 C 0.07 2.69 2.35 45.26 0.11 2.80 16 6 H 0.02 0.87 6.73 -2.39 -0.02 0.85 16 7 C -0.09 -2.64 6.15 31.80 0.20 -2.44 16 8 C 0.10 2.88 4.36 31.47 0.14 3.02 16 9 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 10 O -0.58 -17.16 13.25 -148.98 -1.97 -19.14 16 11 C 0.02 0.69 6.15 86.45 0.53 1.22 16 12 N -0.51 -23.12 4.91 -862.80 -4.24 -27.35 16 13 C 0.21 11.58 4.53 85.56 0.39 11.96 16 14 C -0.52 -30.54 8.99 25.60 0.23 -30.31 16 15 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 16 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 17 N -0.94 -57.71 13.29 21.45 0.28 -57.43 16 18 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H 0.01 0.40 7.98 -2.38 -0.02 0.38 16 23 H 0.09 2.07 8.03 -2.39 -0.02 2.05 16 24 H 0.05 1.67 6.93 -2.38 -0.02 1.65 16 25 H 0.08 1.59 8.07 -2.38 -0.02 1.57 16 26 H 0.09 1.57 8.06 -2.39 -0.02 1.55 16 27 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.01 0.34 6.95 -2.39 -0.02 0.32 16 29 H 0.09 2.85 7.78 -2.39 -0.02 2.83 16 30 H 0.10 2.67 7.96 -2.39 -0.02 2.65 16 31 H 0.08 2.49 8.08 -2.38 -0.02 2.47 16 32 H 0.39 8.25 9.11 -74.06 -0.67 7.58 16 33 H 0.03 1.13 7.30 -2.39 -0.02 1.11 16 34 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.00 -0.15 7.06 -2.39 -0.02 -0.16 16 36 H -0.04 -2.66 7.65 -2.39 -0.02 -2.68 16 37 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -68.84 296.97 -3.27 -72.11 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.36 Total: 11.83 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 4.87 Total: -6.32 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -8.55 Total: -105.29 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -1.97 Total: -19.14 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -68.84 -3.27 -72.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085082643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.650 kcal (2) G-P(sol) polarization free energy of solvation -68.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds