Wall clock time and date at job start Mon Mar 30 2020 02:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00232 * 2 1 4 4 C 1.46894 * 111.00256 * 123.95947 * 2 1 3 5 5 C 1.52999 * 109.47279 * 66.04118 * 4 2 1 6 6 H 1.09002 * 110.36794 * 294.30333 * 5 4 2 7 7 C 1.54379 * 110.41343 * 171.95008 * 5 4 2 8 8 C 1.54257 * 105.06256 * 217.25320 * 7 5 4 9 9 H 1.08997 * 110.32124 * 118.89793 * 8 7 5 10 10 O 1.42898 * 110.32285 * 241.00274 * 8 7 5 11 11 C 1.54382 * 105.06052 * 0.02562 * 8 7 5 12 12 N 1.48562 * 110.40797 * 56.65187 * 5 4 2 13 13 C 1.46894 * 111.00344 * 277.93600 * 12 5 4 14 14 C 1.50693 * 109.47315 * 169.99740 * 13 12 5 15 15 H 1.07994 * 120.00009 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00230 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00498 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99819 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47061 * 89.99506 * 18 16 14 20 20 H 1.48502 * 109.47133 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47120 * 329.99333 * 18 16 14 22 22 H 1.08996 * 109.46814 * 296.04724 * 1 2 3 23 23 H 1.09000 * 109.47261 * 56.04091 * 1 2 3 24 24 H 1.09000 * 109.47171 * 176.04339 * 1 2 3 25 25 H 1.08995 * 109.47466 * 183.95032 * 3 2 1 26 26 H 1.08998 * 109.47692 * 303.96144 * 3 2 1 27 27 H 1.09005 * 109.47050 * 63.95583 * 3 2 1 28 28 H 1.09003 * 109.46801 * 306.04766 * 4 2 1 29 29 H 1.08998 * 109.47357 * 186.04935 * 4 2 1 30 30 H 1.08998 * 110.32365 * 336.14862 * 7 5 4 31 31 H 1.08997 * 110.32065 * 98.25251 * 7 5 4 32 32 H 0.96700 * 113.99887 * 180.02562 * 10 8 7 33 33 H 1.09003 * 110.41233 * 142.63267 * 11 8 7 34 34 H 1.09004 * 110.41109 * 264.95803 * 11 8 7 35 35 H 1.08996 * 109.46975 * 290.00582 * 13 12 5 36 36 H 1.09009 * 109.46835 * 49.99811 * 13 12 5 37 37 H 0.97003 * 120.00499 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1374 5 6 1.6314 -2.2426 0.9702 6 1 0.5514 -2.3764 1.0313 7 6 2.3413 -3.0970 2.0423 8 6 2.7248 -4.4063 1.3222 9 1 3.8066 -4.5389 1.3287 10 8 2.0851 -5.5214 1.9461 11 6 2.2149 -4.2325 -0.1246 12 7 2.1451 -2.7594 -0.3245 13 6 1.2358 -2.4168 -1.4262 14 6 1.8982 -2.7350 -2.7418 15 1 2.8948 -3.1507 -2.7579 16 6 1.2315 -2.4966 -3.9248 17 7 1.8094 -2.7748 -5.0730 18 14 -0.4927 -1.7783 -3.8969 19 1 -0.4120 -0.2959 -3.9319 20 1 -1.2492 -2.2609 -5.0801 21 1 -1.1875 -2.2071 -2.6565 22 1 -0.3633 0.4513 0.9233 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0709 25 1 3.0828 1.3432 -0.0708 26 1 1.5898 1.9164 -0.8523 27 1 1.7045 1.8723 0.9234 28 1 1.5611 -0.3874 2.0627 29 1 3.0797 -0.6611 1.1755 30 1 3.2349 -2.5871 2.4021 31 1 1.6643 -3.3033 2.8712 32 1 2.2900 -6.3726 1.5354 33 1 2.9150 -4.6794 -0.8306 34 1 1.2269 -4.6794 -0.2357 35 1 0.3171 -2.9957 -1.3324 36 1 1.0006 -1.3531 -1.3857 37 1 1.3405 -2.6067 -5.9053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085082649.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:03 Heat of formation + Delta-G solvation = -22.152551 kcal Electronic energy + Delta-G solvation = -17170.873412 eV Core-core repulsion = 14562.917688 eV Total energy + Delta-G solvation = -2607.955724 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.18007 -36.94362 -35.14107 -32.74726 -30.85705 -29.19970 -27.35816 -26.66722 -25.22424 -22.33750 -21.15956 -20.21771 -19.45115 -17.33651 -16.58139 -15.46209 -15.23769 -15.01139 -14.42168 -14.10732 -13.76272 -13.38783 -12.89510 -12.76647 -12.31659 -12.25533 -11.87365 -11.77229 -11.55325 -11.37329 -11.18436 -10.83233 -10.66856 -10.40695 -10.24382 -10.20282 -9.71046 -9.55724 -9.10615 -8.43872 -7.79226 -7.39814 -5.92088 -3.85018 3.35473 3.41807 3.43704 4.17546 4.44546 4.53266 4.87690 5.07580 5.17907 5.33264 5.42880 5.45691 5.49764 5.59339 5.63216 5.75718 5.87960 5.90307 5.97559 6.04841 6.16065 6.16961 6.23470 6.39482 6.43903 6.60038 7.03919 7.08823 7.37349 7.40529 7.81920 7.86979 8.01666 8.09683 8.81537 9.17593 9.71613 11.22028 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.019879 B = 0.011567 C = 0.008308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.159280 B = 2420.058242 C = 3369.270726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.525 5.525 3 C 0.029 3.971 4 C 0.076 3.924 5 C 0.057 3.943 6 H 0.042 0.958 7 C -0.109 4.109 8 C 0.095 3.905 9 H 0.063 0.937 10 O -0.572 6.572 11 C 0.011 3.989 12 N -0.472 5.472 13 C 0.135 3.865 14 C -0.493 4.493 15 H 0.075 0.925 16 C 0.065 3.935 17 N -0.908 5.908 18 Si 0.872 3.128 19 H -0.276 1.276 20 H -0.290 1.290 21 H -0.269 1.269 22 H 0.018 0.982 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.016 0.984 28 H 0.027 0.973 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.376 0.624 33 H 0.082 0.918 34 H 0.043 0.957 35 H -0.025 1.025 36 H 0.078 0.922 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.785 2.529 13.733 13.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.248 5.248 3 C -0.120 4.120 4 C -0.052 4.052 5 C -0.053 4.053 6 H 0.060 0.940 7 C -0.148 4.148 8 C 0.036 3.964 9 H 0.081 0.919 10 O -0.377 6.377 11 C -0.118 4.118 12 N -0.197 5.197 13 C 0.008 3.992 14 C -0.531 4.531 15 H 0.093 0.907 16 C -0.135 4.135 17 N -0.549 5.549 18 Si 0.700 3.300 19 H -0.201 1.201 20 H -0.217 1.217 21 H -0.194 1.194 22 H 0.037 0.963 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.223 0.777 33 H 0.101 0.899 34 H 0.062 0.938 35 H -0.007 1.007 36 H 0.096 0.904 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.384 3.032 13.341 13.687 hybrid contribution -1.838 -0.030 0.227 1.852 sum -2.222 3.002 13.568 14.073 Atomic orbital electron populations 1.22530 0.88191 1.02603 0.99693 1.61989 1.07080 1.12995 1.42756 1.22350 1.01033 0.88979 0.99598 1.22073 1.00482 0.92565 0.90076 1.22625 0.96824 0.93834 0.91969 0.93989 1.22274 1.00905 0.93917 0.97690 1.22638 0.95522 0.86051 0.92196 0.91880 1.86478 1.74109 1.17594 1.59543 1.23746 1.00543 0.92383 0.95123 1.65355 1.47273 1.05667 1.01425 1.20876 0.89542 0.99008 0.89770 1.21027 1.03119 1.40831 0.88146 0.90706 1.24845 0.97425 0.95721 0.95482 1.69899 1.37798 1.49915 0.97257 0.86907 0.85754 0.79935 0.77395 1.20146 1.21658 1.19443 0.96315 0.91546 0.91012 0.91238 0.91588 0.96585 0.95458 0.90129 0.90515 0.90900 0.77694 0.89924 0.93844 1.00703 0.90407 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 7.97 60.06 0.48 0.77 16 2 N -0.53 -9.11 3.09 -251.27 -0.78 -9.88 16 3 C 0.03 0.41 9.57 60.07 0.57 0.98 16 4 C 0.08 1.20 4.63 -3.83 -0.02 1.18 16 5 C 0.06 1.00 2.29 -66.07 -0.15 0.84 16 6 H 0.04 0.77 6.74 -51.93 -0.35 0.42 16 7 C -0.11 -1.63 6.36 -25.35 -0.16 -1.79 16 8 C 0.10 1.47 4.42 -25.35 -0.11 1.36 16 9 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 10 O -0.57 -8.28 13.27 -35.23 -0.47 -8.75 16 11 C 0.01 0.21 5.88 -2.03 -0.01 0.20 16 12 N -0.47 -10.05 5.00 -223.33 -1.12 -11.16 16 13 C 0.13 3.33 2.67 -4.98 -0.01 3.31 16 14 C -0.49 -14.37 9.54 -34.44 -0.33 -14.70 16 15 H 0.07 2.39 8.06 -52.49 -0.42 1.97 16 16 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 17 N -0.91 -28.53 13.96 55.43 0.77 -27.76 16 18 Si 0.87 22.12 27.47 -169.99 -4.67 17.45 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 22 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 23 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 24 H 0.07 1.28 5.43 -51.93 -0.28 1.00 16 25 H 0.07 0.97 8.12 -51.93 -0.42 0.54 16 26 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 27 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 29 H 0.08 1.24 7.94 -51.93 -0.41 0.83 16 30 H 0.08 1.01 7.77 -51.93 -0.40 0.61 16 31 H 0.07 1.04 7.99 -51.93 -0.41 0.62 16 32 H 0.38 3.90 9.12 45.56 0.42 4.32 16 33 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 34 H 0.04 0.88 7.71 -51.93 -0.40 0.48 16 35 H -0.02 -0.64 6.83 -51.93 -0.35 -0.99 16 36 H 0.08 1.89 3.20 -51.92 -0.17 1.72 16 37 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 286.47 15.07 4.32 4.32 Total: -1.00 -32.90 286.47 -7.11 -40.01 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.34 Total: 1.76 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 0.16 Total: -6.00 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -1.12 Total: -48.80 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.47 Total: -8.75 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.90 -7.11 -40.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085082649.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.862 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds