Wall clock time and date at job start Mon Mar 30 2020 02:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00232 * 2 1 4 4 C 1.46894 * 111.00256 * 123.95947 * 2 1 3 5 5 C 1.52999 * 109.47279 * 66.04118 * 4 2 1 6 6 H 1.09002 * 110.36794 * 294.30333 * 5 4 2 7 7 C 1.54379 * 110.41343 * 171.95008 * 5 4 2 8 8 C 1.54257 * 105.06256 * 217.25320 * 7 5 4 9 9 H 1.08997 * 110.32124 * 118.89793 * 8 7 5 10 10 O 1.42898 * 110.32285 * 241.00274 * 8 7 5 11 11 C 1.54382 * 105.06052 * 0.02562 * 8 7 5 12 12 N 1.48562 * 110.40797 * 56.65187 * 5 4 2 13 13 C 1.46894 * 111.00344 * 277.93600 * 12 5 4 14 14 C 1.50693 * 109.47315 * 169.99740 * 13 12 5 15 15 H 1.07994 * 120.00009 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00230 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00498 * 180.02562 * 16 14 13 18 18 Si 1.86807 * 119.99819 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47061 * 89.99506 * 18 16 14 20 20 H 1.48502 * 109.47133 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47120 * 329.99333 * 18 16 14 22 22 H 1.08996 * 109.46814 * 296.04724 * 1 2 3 23 23 H 1.09000 * 109.47261 * 56.04091 * 1 2 3 24 24 H 1.09000 * 109.47171 * 176.04339 * 1 2 3 25 25 H 1.08995 * 109.47466 * 183.95032 * 3 2 1 26 26 H 1.08998 * 109.47692 * 303.96144 * 3 2 1 27 27 H 1.09005 * 109.47050 * 63.95583 * 3 2 1 28 28 H 1.09003 * 109.46801 * 306.04766 * 4 2 1 29 29 H 1.08998 * 109.47357 * 186.04935 * 4 2 1 30 30 H 1.08998 * 110.32365 * 336.14862 * 7 5 4 31 31 H 1.08997 * 110.32065 * 98.25251 * 7 5 4 32 32 H 0.96700 * 113.99887 * 180.02562 * 10 8 7 33 33 H 1.09003 * 110.41233 * 142.63267 * 11 8 7 34 34 H 1.09004 * 110.41109 * 264.95803 * 11 8 7 35 35 H 1.08996 * 109.46975 * 290.00582 * 13 12 5 36 36 H 1.09009 * 109.46835 * 49.99811 * 13 12 5 37 37 H 0.97003 * 120.00499 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1374 5 6 1.6314 -2.2426 0.9702 6 1 0.5514 -2.3764 1.0313 7 6 2.3413 -3.0970 2.0423 8 6 2.7248 -4.4063 1.3222 9 1 3.8066 -4.5389 1.3287 10 8 2.0851 -5.5214 1.9461 11 6 2.2149 -4.2325 -0.1246 12 7 2.1451 -2.7594 -0.3245 13 6 1.2358 -2.4168 -1.4262 14 6 1.8982 -2.7350 -2.7418 15 1 2.8948 -3.1507 -2.7579 16 6 1.2315 -2.4966 -3.9248 17 7 1.8094 -2.7748 -5.0730 18 14 -0.4927 -1.7783 -3.8969 19 1 -0.4120 -0.2959 -3.9319 20 1 -1.2492 -2.2609 -5.0801 21 1 -1.1875 -2.2071 -2.6565 22 1 -0.3633 0.4513 0.9233 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0709 25 1 3.0828 1.3432 -0.0708 26 1 1.5898 1.9164 -0.8523 27 1 1.7045 1.8723 0.9234 28 1 1.5611 -0.3874 2.0627 29 1 3.0797 -0.6611 1.1755 30 1 3.2349 -2.5871 2.4021 31 1 1.6643 -3.3033 2.8712 32 1 2.2900 -6.3726 1.5354 33 1 2.9150 -4.6794 -0.8306 34 1 1.2269 -4.6794 -0.2357 35 1 0.3171 -2.9957 -1.3324 36 1 1.0006 -1.3531 -1.3857 37 1 1.3405 -2.6067 -5.9053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085082649.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:03 Heat of formation + Delta-G solvation = -49.400451 kcal Electronic energy + Delta-G solvation = -17172.054970 eV Core-core repulsion = 14562.917688 eV Total energy + Delta-G solvation = -2609.137282 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57485 -38.15341 -36.51101 -34.83522 -32.58865 -30.54594 -28.65149 -28.42523 -26.60181 -23.94990 -22.71400 -21.64001 -20.88942 -18.77479 -18.55776 -16.89227 -16.61146 -16.43877 -16.03827 -15.57536 -15.19574 -14.74233 -14.56677 -14.47341 -13.97944 -13.67172 -13.21876 -13.12482 -12.97895 -12.77008 -12.58656 -12.32160 -12.24144 -11.96911 -11.82077 -11.74018 -11.56546 -11.26812 -10.86077 -10.66897 -9.16367 -8.96711 -8.22879 -6.21194 1.32471 1.34846 1.44805 2.37516 2.96310 3.10823 3.22184 3.56617 3.77049 3.89106 4.05030 4.22664 4.26468 4.39156 4.42374 4.57481 4.65089 4.69623 4.75922 4.80125 4.91522 4.96535 4.99847 5.00620 5.07925 5.10365 5.23142 5.34905 5.75744 6.01974 6.18936 6.20475 6.35526 6.71243 6.82354 6.85720 7.39963 8.94678 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.019879 B = 0.011567 C = 0.008308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.159280 B = 2420.058242 C = 3369.270726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.563 5.563 3 C 0.031 3.969 4 C 0.080 3.920 5 C 0.055 3.945 6 H 0.033 0.967 7 C -0.103 4.103 8 C 0.108 3.892 9 H 0.080 0.920 10 O -0.577 6.577 11 C 0.008 3.992 12 N -0.491 5.491 13 C 0.151 3.849 14 C -0.500 4.500 15 H 0.029 0.971 16 C 0.006 3.994 17 N -0.954 5.954 18 Si 0.941 3.059 19 H -0.260 1.260 20 H -0.286 1.286 21 H -0.256 1.256 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.393 0.607 33 H 0.060 0.940 34 H 0.026 0.974 35 H -0.040 1.040 36 H 0.090 0.910 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 3.718 16.125 16.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.287 5.287 3 C -0.116 4.116 4 C -0.048 4.048 5 C -0.054 4.054 6 H 0.051 0.949 7 C -0.141 4.141 8 C 0.048 3.952 9 H 0.098 0.902 10 O -0.384 6.384 11 C -0.121 4.121 12 N -0.215 5.215 13 C 0.023 3.977 14 C -0.539 4.539 15 H 0.048 0.952 16 C -0.190 4.190 17 N -0.597 5.597 18 Si 0.765 3.235 19 H -0.185 1.185 20 H -0.212 1.212 21 H -0.180 1.180 22 H 0.064 0.936 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.243 0.757 33 H 0.079 0.921 34 H 0.044 0.956 35 H -0.022 1.022 36 H 0.107 0.893 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.257 4.210 15.761 16.362 hybrid contribution -1.474 -0.474 -0.521 1.633 sum -2.731 3.735 15.240 15.927 Atomic orbital electron populations 1.22463 0.87917 1.01428 1.00996 1.61878 1.07753 1.14881 1.44198 1.22332 1.00853 0.87694 1.00741 1.22067 1.00783 0.91057 0.90857 1.22763 0.96546 0.95612 0.90447 0.94939 1.22296 1.01935 0.92932 0.96916 1.22498 0.96245 0.87074 0.89376 0.90173 1.86444 1.74236 1.18371 1.59370 1.23760 0.99249 0.91288 0.97795 1.65207 1.46768 1.06930 1.02612 1.20611 0.88883 0.99233 0.88948 1.21299 1.01537 1.40251 0.90797 0.95242 1.25755 1.02192 0.96199 0.94880 1.70060 1.39984 1.51496 0.98125 0.85807 0.79971 0.79772 0.77946 1.18469 1.21200 1.17970 0.93563 0.91893 0.93122 0.91321 0.91925 0.94066 0.92527 0.89857 0.88126 0.89598 0.75695 0.92143 0.95562 1.02222 0.89290 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 7.97 127.69 1.02 1.62 16 2 N -0.56 -18.29 3.09 -948.87 -2.93 -21.22 16 3 C 0.03 0.82 9.57 127.69 1.22 2.04 16 4 C 0.08 2.29 4.63 86.30 0.40 2.69 16 5 C 0.06 1.83 2.29 45.06 0.10 1.93 16 6 H 0.03 1.14 6.74 -2.39 -0.02 1.13 16 7 C -0.10 -2.74 6.36 31.49 0.20 -2.54 16 8 C 0.11 3.13 4.42 31.49 0.14 3.27 16 9 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 10 O -0.58 -15.37 13.27 -148.98 -1.98 -17.35 16 11 C 0.01 0.32 5.88 86.40 0.51 0.82 16 12 N -0.49 -20.86 5.00 -860.49 -4.30 -25.16 16 13 C 0.15 7.52 2.67 85.56 0.23 7.75 16 14 C -0.50 -30.24 9.54 25.60 0.24 -29.99 16 15 H 0.03 1.99 8.06 -2.91 -0.02 1.96 16 16 C 0.01 0.34 5.47 84.65 0.46 0.80 16 17 N -0.95 -61.77 13.96 21.45 0.30 -61.47 16 18 Si 0.94 45.98 27.47 68.60 1.88 47.87 16 19 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 21 H -0.26 -11.82 6.54 99.48 0.65 -11.17 16 22 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 24 H 0.05 1.73 5.43 -2.39 -0.01 1.71 16 25 H 0.07 1.77 8.12 -2.39 -0.02 1.75 16 26 H 0.06 1.64 8.12 -2.39 -0.02 1.63 16 27 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.06 1.30 8.12 -2.39 -0.02 1.28 16 29 H 0.08 2.32 7.94 -2.39 -0.02 2.30 16 30 H 0.10 2.23 7.77 -2.39 -0.02 2.21 16 31 H 0.09 2.11 7.99 -2.39 -0.02 2.10 16 32 H 0.39 7.42 9.12 -74.06 -0.68 6.75 16 33 H 0.06 2.55 8.14 -2.39 -0.02 2.54 16 34 H 0.03 1.09 7.71 -2.39 -0.02 1.07 16 35 H -0.04 -2.08 6.83 -2.39 -0.02 -2.09 16 36 H 0.09 4.28 3.20 -2.38 -0.01 4.27 16 37 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -72.57 286.47 -2.19 -74.76 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.31 Total: 14.19 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 4.53 Total: -11.60 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -6.93 Total: -107.85 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -1.98 Total: -17.35 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.87 kcal Total: -72.57 -2.19 -74.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085082649.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.355 kcal (2) G-P(sol) polarization free energy of solvation -72.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds