Wall clock time and date at job start Mon Mar 30 2020 02:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 110.99660 * 2 1 4 4 C 1.46901 * 110.99875 * 123.95445 * 2 1 3 5 5 C 1.53006 * 109.46436 * 169.99981 * 4 2 1 6 6 H 1.08995 * 110.42087 * 67.31906 * 5 4 2 7 7 C 1.54915 * 110.36917 * 189.62554 * 5 4 2 8 8 C 1.55138 * 101.64918 * 155.89773 * 7 5 4 9 9 H 1.09005 * 110.70206 * 82.73348 * 8 7 5 10 10 O 1.42902 * 110.85311 * 205.89262 * 8 7 5 11 11 C 1.54320 * 103.02210 * 324.34672 * 8 7 5 12 12 N 1.47437 * 107.23257 * 22.28526 * 11 8 7 13 13 C 1.46901 * 111.00223 * 123.25511 * 12 11 8 14 14 C 1.50697 * 109.46950 * 49.15830 * 13 12 11 15 15 H 1.08007 * 120.00135 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00407 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00717 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 119.99664 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47348 * 89.99920 * 18 16 14 20 20 H 1.48498 * 109.46845 * 209.99953 * 18 16 14 21 21 H 1.48504 * 109.46887 * 329.99646 * 18 16 14 22 22 H 1.09004 * 109.47172 * 296.04291 * 1 2 3 23 23 H 1.08995 * 109.47278 * 56.04199 * 1 2 3 24 24 H 1.09001 * 109.47005 * 176.05191 * 1 2 3 25 25 H 1.09006 * 109.46983 * 183.95320 * 3 2 1 26 26 H 1.08998 * 109.47278 * 303.95663 * 3 2 1 27 27 H 1.08996 * 109.47441 * 63.96138 * 3 2 1 28 28 H 1.09001 * 109.47064 * 50.00150 * 4 2 1 29 29 H 1.08997 * 109.47357 * 289.99786 * 4 2 1 30 30 H 1.08995 * 110.99221 * 273.99239 * 7 5 4 31 31 H 1.09001 * 110.98790 * 37.81142 * 7 5 4 32 32 H 0.96709 * 113.99803 * 175.14362 * 10 8 7 33 33 H 1.08998 * 109.88703 * 262.87492 * 11 8 7 34 34 H 1.08998 * 110.02181 * 141.76373 * 11 8 7 35 35 H 1.09000 * 109.46943 * 169.15261 * 13 12 11 36 36 H 1.09001 * 109.47034 * 289.15700 * 13 12 11 37 37 H 0.96997 * 120.00329 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5045 -0.9553 0.9702 6 1 4.0200 0.0009 1.0596 7 6 4.0421 -1.9581 2.0216 8 6 5.3288 -2.4787 1.3287 9 1 6.1585 -1.7903 1.4895 10 8 5.6632 -3.7877 1.7942 11 6 4.9308 -2.5148 -0.1619 12 7 3.8031 -1.5810 -0.3356 13 6 4.1136 -0.5632 -1.3483 14 6 4.6477 -1.2341 -2.5875 15 1 4.7470 -2.3091 -2.6194 16 6 5.0106 -0.4756 -3.6801 17 7 5.4772 -1.0610 -4.7614 18 14 4.8395 1.3838 -3.6247 19 1 6.0957 1.9813 -3.1050 20 1 4.5760 1.8976 -4.9928 21 1 3.7106 1.7506 -2.7323 22 1 -0.3634 0.4512 0.9233 23 1 -0.3633 0.5740 -0.8523 24 1 -0.3633 -1.0252 -0.0708 25 1 3.0828 1.3433 -0.0709 26 1 1.5897 1.9163 -0.8524 27 1 1.7045 1.8723 0.9233 28 1 1.5090 -1.7407 1.1756 29 1 1.7976 -0.2248 2.0628 30 1 4.2797 -1.4526 2.9575 31 1 3.3322 -2.7687 2.1866 32 1 6.4166 -4.1870 1.3379 33 1 4.6235 -3.5231 -0.4393 34 1 5.7714 -2.2002 -0.7803 35 1 3.2080 -0.0096 -1.5965 36 1 4.8631 0.1237 -0.9552 37 1 5.7321 -0.5274 -5.5302 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085082653.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:05 Heat of formation + Delta-G solvation = -27.883080 kcal Electronic energy + Delta-G solvation = -17106.921877 eV Core-core repulsion = 14498.717658 eV Total energy + Delta-G solvation = -2608.204219 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.15181 -36.85984 -35.25049 -32.82076 -30.86012 -29.13290 -27.31804 -26.60376 -25.32682 -22.32838 -21.30877 -20.40126 -19.28469 -16.87561 -16.69385 -15.76253 -15.08012 -15.00028 -14.54147 -14.23251 -13.84739 -13.02072 -12.92651 -12.73515 -12.32956 -12.20524 -11.99644 -11.76179 -11.51657 -11.38398 -11.27524 -11.02796 -10.71152 -10.52526 -10.23883 -9.97557 -9.80093 -9.50451 -9.06785 -8.53758 -7.89924 -7.23063 -6.00818 -3.96287 3.30222 3.38439 3.41916 4.14688 4.46532 4.56669 4.75823 5.03412 5.23707 5.32961 5.40788 5.44743 5.47720 5.58350 5.60110 5.76310 5.88244 5.90316 5.96089 6.07606 6.10631 6.15446 6.26868 6.45159 6.57771 6.76465 6.95026 7.17898 7.38586 7.41403 7.74307 7.88861 8.03176 8.17592 8.71450 9.06633 9.61950 11.12408 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.018265 B = 0.011953 C = 0.008023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.615943 B = 2341.866819 C = 3489.167272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.526 5.526 3 C 0.022 3.978 4 C 0.078 3.922 5 C 0.070 3.930 6 H 0.046 0.954 7 C -0.113 4.113 8 C 0.077 3.923 9 H 0.056 0.944 10 O -0.567 6.567 11 C 0.020 3.980 12 N -0.492 5.492 13 C 0.156 3.844 14 C -0.511 4.511 15 H 0.079 0.921 16 C 0.068 3.932 17 N -0.903 5.903 18 Si 0.873 3.127 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.262 1.262 22 H 0.015 0.985 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.015 0.985 28 H 0.078 0.922 29 H 0.026 0.974 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.377 0.623 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.058 0.942 36 H -0.028 1.028 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.538 2.177 12.746 13.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.249 5.249 3 C -0.127 4.127 4 C -0.050 4.050 5 C -0.039 4.039 6 H 0.064 0.936 7 C -0.151 4.151 8 C 0.017 3.983 9 H 0.074 0.926 10 O -0.372 6.372 11 C -0.109 4.109 12 N -0.217 5.217 13 C 0.029 3.971 14 C -0.549 4.549 15 H 0.097 0.903 16 C -0.133 4.133 17 N -0.543 5.543 18 Si 0.700 3.300 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.186 1.186 22 H 0.033 0.967 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.096 0.904 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.224 0.776 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.076 0.924 36 H -0.011 1.011 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.268 1.836 12.333 13.536 hybrid contribution 0.945 1.848 0.391 2.112 sum -4.323 3.684 12.724 13.934 Atomic orbital electron populations 1.22341 0.87954 1.02058 0.99547 1.61843 1.06829 1.13043 1.43158 1.22508 1.01710 0.89029 0.99410 1.22058 0.94931 0.98068 0.89955 1.22563 0.94947 0.95871 0.90543 0.93581 1.22662 0.96465 0.98767 0.97251 1.23212 0.96197 0.83761 0.95106 0.92599 1.86429 1.54625 1.31537 1.64568 1.23505 0.95110 0.98838 0.93432 1.63372 1.36497 1.17644 1.04186 1.20543 0.95614 0.90372 0.90525 1.21179 1.41190 0.95873 0.96677 0.90316 1.24884 0.94938 0.98185 0.95301 1.69898 1.44429 1.35582 1.04360 0.86890 0.78901 0.86678 0.77490 1.20692 1.21356 1.18616 0.96667 0.91704 0.91407 0.90961 0.91674 0.96623 0.90372 0.95611 0.91404 0.89947 0.77565 0.91016 0.90571 0.92370 1.01096 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.57 60.07 0.57 0.98 16 2 N -0.53 -8.84 3.71 -251.25 -0.93 -9.77 16 3 C 0.02 0.35 8.17 60.06 0.49 0.84 16 4 C 0.08 1.22 4.74 -3.82 -0.02 1.20 16 5 C 0.07 1.21 2.33 -66.18 -0.15 1.05 16 6 H 0.05 0.81 6.45 -51.93 -0.34 0.48 16 7 C -0.11 -1.72 6.23 -24.59 -0.15 -1.87 16 8 C 0.08 1.25 4.32 -24.91 -0.11 1.14 16 9 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 10 O -0.57 -8.55 13.40 -35.23 -0.47 -9.02 16 11 C 0.02 0.39 5.55 -2.84 -0.02 0.37 16 12 N -0.49 -10.40 4.83 -224.81 -1.08 -11.49 16 13 C 0.16 3.78 2.57 -4.98 -0.01 3.77 16 14 C -0.51 -14.52 8.47 -34.44 -0.29 -14.81 16 15 H 0.08 2.43 7.11 -52.48 -0.37 2.05 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 18 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 22 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 23 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 24 H 0.07 0.90 8.12 -51.93 -0.42 0.47 16 25 H 0.07 1.27 5.23 -51.93 -0.27 1.00 16 26 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 27 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.08 1.21 7.95 -51.93 -0.41 0.79 16 29 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.26 7.97 -51.93 -0.41 0.85 16 32 H 0.38 4.23 9.11 45.56 0.42 4.65 16 33 H 0.07 1.46 8.06 -51.93 -0.42 1.04 16 34 H 0.08 1.67 6.48 -51.93 -0.34 1.34 16 35 H 0.06 1.45 4.58 -51.93 -0.24 1.21 16 36 H -0.03 -0.70 7.22 -51.93 -0.38 -1.07 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 285.04 15.07 4.30 4.30 Total: -1.00 -31.82 285.04 -7.18 -38.99 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.30 Total: 2.58 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: 0.21 Total: -5.46 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -1.24 Total: -48.30 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.47 Total: -9.02 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.82 -7.18 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085082653.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.111 kcal (2) G-P(sol) polarization free energy of solvation -31.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds