Wall clock time and date at job start Mon Mar 30 2020 02:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 110.99660 * 2 1 4 4 C 1.46901 * 110.99875 * 123.95445 * 2 1 3 5 5 C 1.53006 * 109.46436 * 169.99981 * 4 2 1 6 6 H 1.08995 * 110.42087 * 67.31906 * 5 4 2 7 7 C 1.54915 * 110.36917 * 189.62554 * 5 4 2 8 8 C 1.55138 * 101.64918 * 155.89773 * 7 5 4 9 9 H 1.09005 * 110.70206 * 82.73348 * 8 7 5 10 10 O 1.42902 * 110.85311 * 205.89262 * 8 7 5 11 11 C 1.54320 * 103.02210 * 324.34672 * 8 7 5 12 12 N 1.47437 * 107.23257 * 22.28526 * 11 8 7 13 13 C 1.46901 * 111.00223 * 123.25511 * 12 11 8 14 14 C 1.50697 * 109.46950 * 49.15830 * 13 12 11 15 15 H 1.08007 * 120.00135 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00407 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00717 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 119.99664 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47348 * 89.99920 * 18 16 14 20 20 H 1.48498 * 109.46845 * 209.99953 * 18 16 14 21 21 H 1.48504 * 109.46887 * 329.99646 * 18 16 14 22 22 H 1.09004 * 109.47172 * 296.04291 * 1 2 3 23 23 H 1.08995 * 109.47278 * 56.04199 * 1 2 3 24 24 H 1.09001 * 109.47005 * 176.05191 * 1 2 3 25 25 H 1.09006 * 109.46983 * 183.95320 * 3 2 1 26 26 H 1.08998 * 109.47278 * 303.95663 * 3 2 1 27 27 H 1.08996 * 109.47441 * 63.96138 * 3 2 1 28 28 H 1.09001 * 109.47064 * 50.00150 * 4 2 1 29 29 H 1.08997 * 109.47357 * 289.99786 * 4 2 1 30 30 H 1.08995 * 110.99221 * 273.99239 * 7 5 4 31 31 H 1.09001 * 110.98790 * 37.81142 * 7 5 4 32 32 H 0.96709 * 113.99803 * 175.14362 * 10 8 7 33 33 H 1.08998 * 109.88703 * 262.87492 * 11 8 7 34 34 H 1.08998 * 110.02181 * 141.76373 * 11 8 7 35 35 H 1.09000 * 109.46943 * 169.15261 * 13 12 11 36 36 H 1.09001 * 109.47034 * 289.15700 * 13 12 11 37 37 H 0.96997 * 120.00329 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5045 -0.9553 0.9702 6 1 4.0200 0.0009 1.0596 7 6 4.0421 -1.9581 2.0216 8 6 5.3288 -2.4787 1.3287 9 1 6.1585 -1.7903 1.4895 10 8 5.6632 -3.7877 1.7942 11 6 4.9308 -2.5148 -0.1619 12 7 3.8031 -1.5810 -0.3356 13 6 4.1136 -0.5632 -1.3483 14 6 4.6477 -1.2341 -2.5875 15 1 4.7470 -2.3091 -2.6194 16 6 5.0106 -0.4756 -3.6801 17 7 5.4772 -1.0610 -4.7614 18 14 4.8395 1.3838 -3.6247 19 1 6.0957 1.9813 -3.1050 20 1 4.5760 1.8976 -4.9928 21 1 3.7106 1.7506 -2.7323 22 1 -0.3634 0.4512 0.9233 23 1 -0.3633 0.5740 -0.8523 24 1 -0.3633 -1.0252 -0.0708 25 1 3.0828 1.3433 -0.0709 26 1 1.5897 1.9163 -0.8524 27 1 1.7045 1.8723 0.9233 28 1 1.5090 -1.7407 1.1756 29 1 1.7976 -0.2248 2.0628 30 1 4.2797 -1.4526 2.9575 31 1 3.3322 -2.7687 2.1866 32 1 6.4166 -4.1870 1.3379 33 1 4.6235 -3.5231 -0.4393 34 1 5.7714 -2.2002 -0.7803 35 1 3.2080 -0.0096 -1.5965 36 1 4.8631 0.1237 -0.9552 37 1 5.7321 -0.5274 -5.5302 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085082653.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:05 Heat of formation + Delta-G solvation = -54.446038 kcal Electronic energy + Delta-G solvation = -17108.073733 eV Core-core repulsion = 14498.717658 eV Total energy + Delta-G solvation = -2609.356075 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.56882 -38.06670 -36.64202 -34.85091 -32.58592 -30.48651 -28.55924 -28.36750 -26.71382 -23.93544 -22.75387 -21.88079 -20.71416 -18.75379 -18.15826 -17.26022 -16.55370 -16.34282 -16.01482 -15.75975 -15.16546 -14.70456 -14.55024 -14.15846 -14.06309 -13.72677 -13.31440 -13.11330 -12.82131 -12.73457 -12.68115 -12.51837 -12.17612 -12.10007 -11.82006 -11.67967 -11.37187 -11.18648 -10.96619 -10.75420 -9.09163 -8.84665 -8.25557 -6.26476 1.33538 1.36977 1.48937 2.37079 2.94666 3.08517 3.32927 3.40936 3.72893 3.90160 4.14056 4.16779 4.30099 4.38709 4.47038 4.59033 4.67204 4.69404 4.79084 4.79266 4.89800 4.96948 5.03243 5.07754 5.09305 5.14120 5.27041 5.32076 5.67976 6.05806 6.24890 6.26315 6.44296 6.72154 6.80575 6.81371 7.36361 8.91028 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.018265 B = 0.011953 C = 0.008023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.615943 B = 2341.866819 C = 3489.167272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.561 5.561 3 C 0.024 3.976 4 C 0.083 3.917 5 C 0.068 3.932 6 H 0.047 0.953 7 C -0.104 4.104 8 C 0.088 3.912 9 H 0.067 0.933 10 O -0.570 6.570 11 C 0.022 3.978 12 N -0.510 5.510 13 C 0.175 3.825 14 C -0.517 4.517 15 H 0.036 0.964 16 C 0.007 3.993 17 N -0.951 5.951 18 Si 0.942 3.058 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.241 1.241 22 H 0.036 0.964 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.393 0.607 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.057 0.943 36 H -0.029 1.029 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.427 3.810 15.133 16.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.285 5.285 3 C -0.124 4.124 4 C -0.045 4.045 5 C -0.041 4.041 6 H 0.065 0.935 7 C -0.142 4.142 8 C 0.028 3.972 9 H 0.085 0.915 10 O -0.377 6.377 11 C -0.107 4.107 12 N -0.235 5.235 13 C 0.048 3.952 14 C -0.555 4.555 15 H 0.054 0.946 16 C -0.189 4.189 17 N -0.593 5.593 18 Si 0.766 3.234 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.164 1.164 22 H 0.055 0.945 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.243 0.757 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.075 0.925 36 H -0.012 1.012 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.160 3.453 14.747 16.351 hybrid contribution 1.234 1.199 -0.361 1.758 sum -4.926 4.652 14.387 15.902 Atomic orbital electron populations 1.22327 0.86259 1.02309 1.00663 1.61788 1.08669 1.13703 1.44332 1.22433 1.00320 0.88992 1.00625 1.22020 0.93334 0.98330 0.90860 1.22715 0.96496 0.96088 0.88793 0.93531 1.22655 0.95471 0.98393 0.97667 1.23058 0.97276 0.84638 0.92212 0.91464 1.86398 1.55697 1.31082 1.64557 1.23383 0.93654 0.97597 0.96044 1.63259 1.36811 1.17364 1.06030 1.20207 0.94876 0.90490 0.89629 1.21449 1.41043 0.94237 0.98772 0.94576 1.25816 0.94553 1.03852 0.94727 1.70058 1.46021 1.37802 1.05370 0.85787 0.79901 0.79798 0.77938 1.19583 1.21093 1.16422 0.94510 0.91674 0.91489 0.92985 0.91962 0.94085 0.90583 0.92758 0.88252 0.89866 0.75724 0.92643 0.93820 0.92519 1.01170 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.57 127.69 1.22 2.02 16 2 N -0.56 -17.54 3.71 -948.83 -3.52 -21.07 16 3 C 0.02 0.71 8.17 127.69 1.04 1.75 16 4 C 0.08 2.33 4.74 86.31 0.41 2.74 16 5 C 0.07 2.18 2.33 45.39 0.11 2.29 16 6 H 0.05 1.52 6.45 -2.39 -0.02 1.50 16 7 C -0.10 -2.84 6.23 31.98 0.20 -2.64 16 8 C 0.09 2.71 4.32 31.78 0.14 2.85 16 9 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 10 O -0.57 -16.14 13.40 -148.98 -2.00 -18.13 16 11 C 0.02 0.89 5.55 86.65 0.48 1.37 16 12 N -0.51 -21.45 4.83 -865.17 -4.18 -25.63 16 13 C 0.18 8.49 2.57 85.56 0.22 8.71 16 14 C -0.52 -30.36 8.47 25.60 0.22 -30.14 16 15 H 0.04 2.36 7.11 -2.91 -0.02 2.34 16 16 C 0.01 0.43 5.47 84.65 0.46 0.89 16 17 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 18 Si 0.94 44.62 27.47 68.60 1.88 46.51 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.24 -10.51 6.54 99.48 0.65 -9.86 16 22 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.06 1.58 8.12 -2.39 -0.02 1.56 16 24 H 0.07 1.64 8.12 -2.39 -0.02 1.62 16 25 H 0.05 1.71 5.23 -2.38 -0.01 1.69 16 26 H 0.06 1.81 8.12 -2.39 -0.02 1.79 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 2.16 7.95 -2.39 -0.02 2.14 16 29 H 0.05 1.24 8.12 -2.39 -0.02 1.22 16 30 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.08 2.29 7.97 -2.39 -0.02 2.27 16 32 H 0.39 8.30 9.11 -74.05 -0.67 7.62 16 33 H 0.06 2.35 8.06 -2.39 -0.02 2.33 16 34 H 0.04 2.01 6.48 -2.39 -0.02 1.99 16 35 H 0.06 2.78 4.58 -2.39 -0.01 2.77 16 36 H -0.03 -1.41 7.22 -2.39 -0.02 -1.43 16 37 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -69.90 285.04 -2.70 -72.60 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.31 Total: 16.04 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 4.50 Total: -10.15 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -7.40 Total: -106.86 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -2.00 Total: -18.13 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.51 kcal Total: -69.90 -2.70 -72.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085082653.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.153 kcal (2) G-P(sol) polarization free energy of solvation -69.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds