Wall clock time and date at job start Mon Mar 30 2020 03:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 120.00250 * 2 1 4 4 H 1.48496 * 109.47409 * 240.00361 * 3 2 1 5 5 H 1.48501 * 109.47065 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46823 * 120.00030 * 3 2 1 7 7 C 1.38715 * 119.99832 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99948 * 179.97438 * 7 2 1 9 9 S 1.76209 * 119.99822 * 359.97438 * 7 2 1 10 10 C 1.76204 * 99.99655 * 185.64661 * 9 7 2 11 11 C 1.38990 * 120.06046 * 6.77049 * 10 9 7 12 12 C 1.38682 * 119.84739 * 180.31787 * 11 10 9 13 13 N 1.39747 * 120.01584 * 179.97438 * 12 11 10 14 14 C 1.39021 * 119.96891 * 359.93912 * 12 11 10 15 15 C 1.38212 * 120.11343 * 0.03957 * 14 12 11 16 16 C 1.38181 * 120.15502 * 0.02562 * 15 14 12 17 17 Cl 1.73601 * 119.98676 * 179.97438 * 16 15 14 18 18 H 0.97001 * 120.00004 * 359.97438 * 1 2 3 19 19 H 1.07998 * 120.07260 * 0.25419 * 11 10 9 20 20 H 0.96999 * 119.99699 * 180.02562 * 13 12 11 21 21 H 0.97001 * 119.99830 * 0.02562 * 13 12 11 22 22 H 1.07997 * 119.94218 * 180.02562 * 14 12 11 23 23 H 1.08005 * 119.91902 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0099 -1.2013 -0.0005 8 1 3.0899 -1.2013 -0.0010 9 16 1.1287 -2.7273 -0.0005 10 6 2.4713 -3.8557 0.1694 11 6 3.7567 -3.3791 0.3980 12 6 4.8112 -4.2709 0.5245 13 7 6.1052 -3.7954 0.7539 14 6 4.5804 -5.6381 0.4238 15 6 3.3015 -6.1105 0.1969 16 6 2.2474 -5.2262 0.0687 17 17 0.6429 -5.8244 -0.2169 18 1 -0.4850 0.8401 0.0004 19 1 3.9341 -2.3166 0.4759 20 1 6.8426 -4.4194 0.8420 21 1 6.2658 -2.8415 0.8250 22 1 5.4018 -6.3322 0.5228 23 1 3.1257 -7.1733 0.1188 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085929502.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:30 Heat of formation + Delta-G solvation = 7.543196 kcal Electronic energy + Delta-G solvation = -11228.462385 eV Core-core repulsion = 9000.038455 eV Total energy + Delta-G solvation = -2228.423930 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.002 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.52316 -35.75298 -33.63998 -32.75496 -30.43098 -27.77377 -25.80273 -22.39564 -21.50103 -18.16888 -16.75499 -16.29757 -15.81201 -14.99185 -14.29410 -13.81612 -13.11139 -13.08515 -12.96467 -11.76072 -11.50168 -11.47292 -11.21584 -11.06867 -10.52468 -10.18486 -9.85624 -9.75488 -9.36724 -8.71687 -8.61775 -7.06457 -6.55393 -6.49616 -4.21424 1.98273 2.10019 2.95588 3.11175 3.11655 3.16394 3.41147 3.99337 4.28782 4.36825 4.92452 5.12174 5.48068 5.69970 6.13426 6.18265 6.41467 6.79665 6.85185 7.02695 7.21844 7.46850 7.91185 8.11555 8.14991 8.97516 10.56515 Molecular weight = 229.00amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.010346 C = 0.007476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.624604 B = 2705.708226 C = 3744.205645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.079 3.921 3 Si 0.923 3.077 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.560 4.560 8 H 0.092 0.908 9 S 0.087 5.913 10 C -0.040 4.040 11 C -0.213 4.213 12 C 0.232 3.768 13 N -0.882 5.882 14 C -0.233 4.233 15 C -0.048 4.048 16 C -0.102 4.102 17 Cl -0.087 7.087 18 H 0.275 0.725 19 H 0.140 0.860 20 H 0.392 0.608 21 H 0.395 0.605 22 H 0.114 0.886 23 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.820 -6.988 0.878 10.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.131 4.131 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.196 1.196 7 C -0.707 4.707 8 H 0.110 0.890 9 S 0.345 5.655 10 C -0.158 4.158 11 C -0.245 4.245 12 C 0.126 3.874 13 N -0.422 5.422 14 C -0.261 4.261 15 C -0.069 4.069 16 C -0.139 4.139 17 Cl -0.059 7.059 18 H 0.085 0.915 19 H 0.157 0.843 20 H 0.219 0.781 21 H 0.223 0.777 22 H 0.132 0.868 23 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.997 -6.885 0.716 9.159 hybrid contribution 2.133 1.264 0.190 2.487 sum 8.130 -5.621 0.906 9.925 Atomic orbital electron populations 1.69988 1.06118 1.28442 1.45000 1.25094 0.95097 0.99595 0.93326 0.86139 0.79372 0.80496 0.79179 1.19523 1.20548 1.19564 1.23412 0.96154 0.91585 1.59542 0.88991 1.83759 1.04696 0.96045 1.81038 1.22402 1.00046 0.96025 0.97336 1.20763 0.90673 0.99940 1.13132 1.17735 0.84976 0.92538 0.92159 1.42424 1.06142 1.09750 1.83870 1.20131 0.96641 0.93034 1.16330 1.20439 0.91017 0.98130 0.97299 1.20043 0.85590 0.92067 1.16166 1.98289 1.24505 1.87911 1.95161 0.91542 0.84268 0.78095 0.77694 0.86834 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.29 13.22 55.49 0.73 -23.55 14 2 C 0.08 2.13 5.49 -17.46 -0.10 2.03 14 3 Si 0.92 20.28 29.55 -169.99 -5.02 15.26 14 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 14 5 H -0.28 -6.06 7.11 56.52 0.40 -5.65 14 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 14 7 C -0.56 -15.09 8.99 30.91 0.28 -14.81 14 8 H 0.09 2.36 4.97 -52.49 -0.26 2.10 14 9 S 0.09 2.23 20.55 -107.50 -2.21 0.02 14 10 C -0.04 -0.90 6.10 -38.93 -0.24 -1.13 14 11 C -0.21 -4.45 9.07 -39.14 -0.35 -4.81 14 12 C 0.23 4.02 6.75 -83.80 -0.57 3.45 14 13 N -0.88 -11.58 9.09 32.40 0.29 -11.28 14 14 C -0.23 -3.78 9.89 -39.30 -0.39 -4.17 14 15 C -0.05 -0.82 9.81 -39.61 -0.39 -1.21 14 16 C -0.10 -2.06 6.34 -39.23 -0.25 -2.31 14 17 Cl -0.09 -1.67 27.83 -51.86 -1.44 -3.11 14 18 H 0.27 7.20 8.31 -40.82 -0.34 6.86 14 19 H 0.14 3.02 5.03 -52.49 -0.26 2.75 14 20 H 0.39 4.00 8.84 -40.82 -0.36 3.64 14 21 H 0.40 4.78 8.84 -40.82 -0.36 4.42 14 22 H 0.11 1.49 8.06 -52.49 -0.42 1.07 14 23 H 0.12 1.73 8.06 -52.48 -0.42 1.31 14 LS Contribution 236.11 15.07 3.56 3.56 Total: -1.00 -29.08 236.11 -7.32 -36.40 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -1.23 Total: 5.66 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -2.00 Total: -22.95 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 1.03 Total: -34.84 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.21 Total: 0.02 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -1.44 Total: -3.11 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.08 -7.32 -36.40 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085929502.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.943 kcal (2) G-P(sol) polarization free energy of solvation -29.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds