Wall clock time and date at job start Mon Mar 30 2020 03:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31672 * 1 3 3 Si 1.86796 * 120.00237 * 2 1 4 4 H 1.48498 * 109.47438 * 269.99890 * 3 2 1 5 5 H 1.48500 * 109.47240 * 30.00310 * 3 2 1 6 6 H 1.48508 * 109.46894 * 150.00125 * 3 2 1 7 7 C 1.38657 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00385 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00058 * 359.97438 * 7 2 1 10 10 C 1.76198 * 100.00119 * 185.11888 * 9 7 2 11 11 C 1.39147 * 120.01439 * 85.49044 * 10 9 7 12 12 C 1.37947 * 120.00356 * 180.02562 * 11 10 9 13 13 C 1.38968 * 120.03050 * 0.27454 * 12 11 10 14 14 N 1.39823 * 119.99007 * 179.70624 * 13 12 11 15 15 C 1.39079 * 120.02327 * 359.44969 * 13 12 11 16 16 Cl 1.73605 * 120.00152 * 180.27061 * 15 13 12 17 17 C 1.38047 * 119.99666 * 0.55468 * 15 13 12 18 18 H 0.96999 * 119.99673 * 0.02562 * 1 2 3 19 19 H 1.07998 * 119.99268 * 0.02562 * 11 10 9 20 20 H 1.08004 * 119.98411 * 180.02562 * 12 11 10 21 21 H 0.97003 * 120.00018 * 359.97438 * 14 13 12 22 22 H 0.97000 * 120.00821 * 180.02562 * 14 13 12 23 23 H 1.07994 * 120.01540 * 179.74779 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3167 0.0000 0.0000 3 14 2.2508 1.6177 0.0000 4 1 2.4983 2.0464 -1.4000 5 1 1.4483 2.6526 0.7001 6 1 3.5484 1.4400 0.7001 7 6 2.0099 -1.2008 -0.0005 8 1 3.0900 -1.2010 -0.0001 9 16 1.1289 -2.7268 -0.0005 10 6 2.4726 -3.8560 0.1535 11 6 2.9719 -4.1762 1.4122 12 6 4.0243 -5.0599 1.5325 13 6 4.5901 -5.6264 0.3967 14 7 5.6607 -6.5173 0.5192 15 6 4.0882 -5.3117 -0.8617 16 17 4.7909 -6.0252 -2.2798 17 6 3.0352 -4.4274 -0.9833 18 1 -0.4849 0.8401 -0.0004 19 1 2.5355 -3.7327 2.2950 20 1 4.4114 -5.3085 2.5097 21 1 6.0088 -6.7396 1.3970 22 1 6.0561 -6.9126 -0.2734 23 1 2.6479 -4.1797 -1.9605 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085937991.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:37 Heat of formation + Delta-G solvation = 6.072516 kcal Electronic energy + Delta-G solvation = -11092.168490 eV Core-core repulsion = 8863.680786 eV Total energy + Delta-G solvation = -2228.487704 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.002 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.88539 -36.08984 -34.21331 -32.45308 -30.31307 -28.19380 -25.49306 -22.47674 -21.81458 -17.92516 -17.04425 -16.77106 -15.92517 -14.80814 -14.07977 -14.00541 -13.52285 -13.31284 -13.11788 -12.16320 -11.44351 -11.23762 -11.08458 -11.01205 -10.86395 -10.61682 -10.41263 -9.70759 -9.11255 -8.55220 -8.38844 -7.18194 -6.63460 -6.22477 -3.96389 1.69181 1.79811 2.46750 3.22399 3.24292 3.30222 3.56458 3.95387 4.07507 4.28331 5.11056 5.14022 5.54963 5.59910 5.83956 5.92316 6.26634 6.37311 6.51845 7.03343 7.09999 7.52121 7.62766 7.79384 8.38464 9.22383 10.82956 Molecular weight = 229.00amu Principal moments of inertia in cm(-1) A = 0.037563 B = 0.007138 C = 0.006954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.240058 B = 3921.566120 C = 4025.228099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.075 0.925 9 S -0.035 6.035 10 C -0.142 4.142 11 C -0.028 4.028 12 C -0.200 4.200 13 C 0.223 3.777 14 N -0.878 5.878 15 C -0.121 4.121 16 Cl -0.091 7.091 17 C -0.026 4.026 18 H 0.268 0.732 19 H 0.132 0.868 20 H 0.124 0.876 21 H 0.397 0.603 22 H 0.397 0.603 23 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.057 -10.555 0.871 13.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.665 4.665 8 H 0.093 0.907 9 S 0.199 5.801 10 C -0.255 4.255 11 C -0.050 4.050 12 C -0.224 4.224 13 C 0.117 3.883 14 N -0.419 5.419 15 C -0.154 4.154 16 Cl -0.062 7.062 17 C -0.048 4.048 18 H 0.078 0.922 19 H 0.150 0.850 20 H 0.141 0.859 21 H 0.225 0.775 22 H 0.226 0.774 23 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.740 -10.631 0.656 13.167 hybrid contribution 2.310 0.897 0.014 2.479 sum 10.050 -9.734 0.671 14.007 Atomic orbital electron populations 1.70014 1.05845 1.27493 1.47497 1.24985 0.95101 0.99031 0.94568 0.86154 0.79462 0.81438 0.78446 1.20226 1.20745 1.19658 1.22874 0.94938 0.90506 1.58186 0.90712 1.83549 1.04431 0.96902 1.95173 1.22476 1.04991 1.04553 0.93456 1.21626 0.92809 0.92851 0.97695 1.20536 1.01628 1.04193 0.96068 1.17485 0.88365 0.90373 0.92027 1.42499 1.37089 1.51268 1.11018 1.20402 1.02859 1.06763 0.85388 1.98292 1.84149 1.83458 1.40333 1.21475 0.91596 0.92053 0.99638 0.92188 0.85037 0.85855 0.77498 0.77371 0.84702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.52 13.22 55.48 0.73 -24.79 14 2 C 0.07 2.01 5.49 -17.47 -0.10 1.91 14 3 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 14 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 14 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 14 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 14 7 C -0.52 -14.59 9.46 30.89 0.29 -14.30 14 8 H 0.07 2.10 7.79 -52.48 -0.41 1.69 14 9 S -0.03 -0.89 21.40 -107.50 -2.30 -3.19 14 10 C -0.14 -3.05 5.46 -38.92 -0.21 -3.26 14 11 C -0.03 -0.53 9.79 -39.35 -0.39 -0.92 14 12 C -0.20 -3.13 9.88 -39.42 -0.39 -3.52 14 13 C 0.22 3.41 6.76 -83.63 -0.57 2.84 14 14 N -0.88 -9.97 9.05 32.48 0.29 -9.67 14 15 C -0.12 -2.06 6.33 -39.34 -0.25 -2.31 14 16 Cl -0.09 -1.31 27.58 -51.86 -1.43 -2.74 14 17 C -0.03 -0.50 9.57 -39.33 -0.38 -0.88 14 18 H 0.27 7.32 8.31 -40.82 -0.34 6.98 14 19 H 0.13 2.40 8.06 -52.49 -0.42 1.97 14 20 H 0.12 1.55 8.06 -52.48 -0.42 1.12 14 21 H 0.40 3.46 8.84 -40.82 -0.36 3.10 14 22 H 0.40 4.16 7.49 -40.82 -0.31 3.86 14 23 H 0.14 2.62 8.06 -52.49 -0.42 2.19 14 LS Contribution 241.48 15.07 3.64 3.64 Total: -1.00 -30.13 241.48 -7.55 -37.68 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -1.48 Total: 3.11 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -1.98 Total: -20.43 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 1.03 Total: -34.46 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.30 Total: -3.19 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -1.43 Total: -2.74 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.13 -7.55 -37.68 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085937991.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.749 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds