Wall clock time and date at job start Mon Mar 30 2020 03:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31672 * 1 3 3 Si 1.86796 * 120.00237 * 2 1 4 4 H 1.48498 * 109.47438 * 269.99890 * 3 2 1 5 5 H 1.48500 * 109.47240 * 30.00310 * 3 2 1 6 6 H 1.48508 * 109.46894 * 150.00125 * 3 2 1 7 7 C 1.38657 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00385 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00058 * 359.97438 * 7 2 1 10 10 C 1.76198 * 100.00119 * 185.11888 * 9 7 2 11 11 C 1.39147 * 120.01439 * 85.49044 * 10 9 7 12 12 C 1.37947 * 120.00356 * 180.02562 * 11 10 9 13 13 C 1.38968 * 120.03050 * 0.27454 * 12 11 10 14 14 N 1.39823 * 119.99007 * 179.70624 * 13 12 11 15 15 C 1.39079 * 120.02327 * 359.44969 * 13 12 11 16 16 Cl 1.73605 * 120.00152 * 180.27061 * 15 13 12 17 17 C 1.38047 * 119.99666 * 0.55468 * 15 13 12 18 18 H 0.96999 * 119.99673 * 0.02562 * 1 2 3 19 19 H 1.07998 * 119.99268 * 0.02562 * 11 10 9 20 20 H 1.08004 * 119.98411 * 180.02562 * 12 11 10 21 21 H 0.97003 * 120.00018 * 359.97438 * 14 13 12 22 22 H 0.97000 * 120.00821 * 180.02562 * 14 13 12 23 23 H 1.07994 * 120.01540 * 179.74779 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3167 0.0000 0.0000 3 14 2.2508 1.6177 0.0000 4 1 2.4983 2.0464 -1.4000 5 1 1.4483 2.6526 0.7001 6 1 3.5484 1.4400 0.7001 7 6 2.0099 -1.2008 -0.0005 8 1 3.0900 -1.2010 -0.0001 9 16 1.1289 -2.7268 -0.0005 10 6 2.4726 -3.8560 0.1535 11 6 2.9719 -4.1762 1.4122 12 6 4.0243 -5.0599 1.5325 13 6 4.5901 -5.6264 0.3967 14 7 5.6607 -6.5173 0.5192 15 6 4.0882 -5.3117 -0.8617 16 17 4.7909 -6.0252 -2.2798 17 6 3.0352 -4.4274 -0.9833 18 1 -0.4849 0.8401 -0.0004 19 1 2.5355 -3.7327 2.2950 20 1 4.4114 -5.3085 2.5097 21 1 6.0088 -6.7396 1.3970 22 1 6.0561 -6.9126 -0.2734 23 1 2.6479 -4.1797 -1.9605 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085937991.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:37 Heat of formation + Delta-G solvation = -13.252363 kcal Electronic energy + Delta-G solvation = -11093.006480 eV Core-core repulsion = 8863.680786 eV Total energy + Delta-G solvation = -2229.325693 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.002 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.22020 -37.34778 -35.43783 -34.58253 -31.69291 -29.50680 -27.63904 -23.84203 -23.19793 -19.88017 -18.44893 -17.91272 -17.39774 -16.87066 -15.63302 -15.28853 -14.97654 -14.73309 -14.62401 -13.79631 -13.33336 -12.93986 -12.69441 -12.54945 -12.35805 -12.05176 -11.94496 -11.38708 -11.16910 -10.40014 -9.76917 -8.72955 -8.56669 -8.22841 -6.11118 0.29846 0.36891 1.15871 1.35091 1.40275 1.50337 1.82916 2.30132 2.70434 2.87313 2.99609 3.51307 3.83142 4.29919 4.43409 4.57737 4.90020 5.00983 5.15327 5.45179 5.60262 5.71861 6.23046 6.39320 6.91396 7.07979 8.74002 Molecular weight = 229.00amu Principal moments of inertia in cm(-1) A = 0.037563 B = 0.007138 C = 0.006954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.240058 B = 3921.566120 C = 4025.228099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.019 3.981 3 Si 0.989 3.011 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.266 1.266 7 C -0.533 4.533 8 H 0.066 0.934 9 S -0.090 6.090 10 C -0.169 4.169 11 C -0.037 4.037 12 C -0.189 4.189 13 C 0.239 3.761 14 N -0.855 5.855 15 C -0.130 4.130 16 Cl -0.068 7.068 17 C -0.036 4.036 18 H 0.272 0.728 19 H 0.129 0.871 20 H 0.164 0.836 21 H 0.415 0.585 22 H 0.405 0.595 23 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.533 -11.443 1.479 16.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.186 4.186 3 Si 0.812 3.188 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.681 4.681 8 H 0.084 0.916 9 S 0.145 5.855 10 C -0.283 4.283 11 C -0.058 4.058 12 C -0.213 4.213 13 C 0.130 3.870 14 N -0.396 5.396 15 C -0.164 4.164 16 Cl -0.039 7.039 17 C -0.058 4.058 18 H 0.081 0.919 19 H 0.147 0.853 20 H 0.181 0.819 21 H 0.246 0.754 22 H 0.236 0.764 23 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.253 -11.566 1.272 15.509 hybrid contribution 1.673 0.958 -0.203 1.939 sum 11.927 -10.608 1.069 15.998 Atomic orbital electron populations 1.70134 1.07439 1.28592 1.48368 1.25956 0.96007 1.02727 0.93911 0.85083 0.78220 0.76756 0.78776 1.19475 1.19668 1.18988 1.23110 0.94695 0.91955 1.58293 0.91554 1.83442 1.08369 0.98122 1.95601 1.22130 1.05301 1.05398 0.95457 1.21621 0.93883 0.93869 0.96447 1.20803 1.00018 1.02508 0.97969 1.17563 0.88436 0.89774 0.91183 1.42478 1.35217 1.49306 1.12646 1.20368 1.02394 1.06512 0.87081 1.98297 1.83512 1.82855 1.39252 1.21306 0.92751 0.93127 0.98590 0.91861 0.85288 0.81893 0.75376 0.76430 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.43 13.22 21.62 0.29 -54.14 14 2 C 0.02 1.07 5.49 84.82 0.47 1.54 14 3 Si 0.99 44.23 29.55 68.60 2.03 46.26 14 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 14 5 H -0.27 -11.60 7.11 99.48 0.71 -10.89 14 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 14 7 C -0.53 -30.97 9.46 67.92 0.64 -30.33 14 8 H 0.07 3.82 7.79 -2.91 -0.02 3.80 14 9 S -0.09 -4.84 21.40 -56.49 -1.21 -6.05 14 10 C -0.17 -7.43 5.46 22.70 0.12 -7.30 14 11 C -0.04 -1.36 9.79 22.42 0.22 -1.14 14 12 C -0.19 -5.33 9.88 22.38 0.22 -5.11 14 13 C 0.24 6.53 6.76 38.24 0.26 6.79 14 14 N -0.86 -15.61 9.05 -51.14 -0.46 -16.07 14 15 C -0.13 -4.19 6.33 22.43 0.14 -4.05 14 16 Cl -0.07 -1.81 27.58 -2.72 -0.08 -1.89 14 17 C -0.04 -1.41 9.57 22.44 0.21 -1.20 14 18 H 0.27 15.13 8.31 -92.71 -0.77 14.36 14 19 H 0.13 4.73 8.06 -2.91 -0.02 4.71 14 20 H 0.16 3.30 8.06 -2.91 -0.02 3.27 14 21 H 0.41 5.08 8.84 -92.71 -0.82 4.26 14 22 H 0.41 6.72 7.49 -92.71 -0.69 6.03 14 23 H 0.12 4.98 8.06 -2.91 -0.02 4.96 14 Total: -1.00 -66.52 241.48 2.60 -63.92 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -0.26 Total: 8.78 kcal Atomic # 6 Polarization: -43.10 SS G_CDS: 2.29 Total: -40.81 kcal Atomic # 7 Polarization: -70.04 SS G_CDS: -0.18 Total: -70.21 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: -4.84 SS G_CDS: -1.21 Total: -6.05 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.08 Total: -1.89 kcal Total: -66.52 2.60 -63.92 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085937991.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.668 kcal (2) G-P(sol) polarization free energy of solvation -66.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds