Wall clock time and date at job start Mon Mar 30 2020 03:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86803 * 119.99831 * 2 1 4 4 H 1.48500 * 109.47329 * 240.00301 * 3 2 1 5 5 H 1.48496 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46622 * 120.00551 * 3 2 1 7 7 C 1.38643 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00072 * 179.97438 * 7 2 1 9 9 O 1.34802 * 119.99880 * 359.97438 * 7 2 1 10 10 C 1.35820 * 117.00233 * 180.02562 * 9 7 2 11 11 C 1.39022 * 120.08839 * 89.99210 * 10 9 7 12 12 F 1.35096 * 120.04304 * 0.02562 * 11 10 9 13 13 C 1.38327 * 119.91333 * 180.02562 * 11 10 9 14 14 C 1.38287 * 120.08825 * 0.02562 * 13 11 10 15 15 C 1.50697 * 119.91593 * 179.97438 * 14 13 11 16 16 N 1.46905 * 109.47110 * 89.99972 * 15 14 13 17 17 C 1.38285 * 120.17510 * 0.27216 * 14 13 11 18 18 C 1.38334 * 120.08625 * 359.44847 * 17 14 13 19 19 F 1.35096 * 120.04596 * 180.29318 * 18 17 14 20 20 H 0.97001 * 119.99947 * 359.97438 * 1 2 3 21 21 H 1.07994 * 119.95868 * 180.02562 * 13 11 10 22 22 H 1.09002 * 109.47000 * 329.99968 * 15 14 13 23 23 H 1.08995 * 109.47308 * 210.00109 * 15 14 13 24 24 H 1.00901 * 110.99869 * 180.02562 * 16 15 14 25 25 H 1.00896 * 110.99543 * 303.95619 * 16 15 14 26 26 H 1.08001 * 119.96304 * 179.70591 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6966 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1035 1.6963 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0745 -3.5072 -0.0005 11 6 2.4542 -4.0917 1.2024 12 9 2.0875 -3.5276 2.3739 13 6 3.2080 -5.2515 1.1981 14 6 3.5843 -5.8294 -0.0005 15 6 4.4060 -7.0927 -0.0006 16 7 3.5119 -8.2583 -0.0010 17 6 3.2138 -5.2478 -1.1992 18 6 2.4552 -4.0910 -1.2034 19 9 2.0887 -3.5268 -2.3749 20 1 -0.4850 0.8401 0.0004 21 1 3.5030 -5.7064 2.1321 22 1 5.0346 -7.1173 0.8896 23 1 5.0350 -7.1169 -0.8904 24 1 4.0393 -9.1185 -0.0007 25 1 2.8742 -8.2251 0.7802 26 1 3.5137 -5.6994 -2.1333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086894594.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:28 Heat of formation + Delta-G solvation = -92.095709 kcal Electronic energy + Delta-G solvation = -15568.537335 eV Core-core repulsion = 12477.076281 eV Total energy + Delta-G solvation = -3091.461054 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.065 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.21699 -48.16911 -38.90930 -36.94616 -34.21130 -31.96503 -29.90549 -29.26815 -25.40786 -24.09673 -22.46010 -21.08828 -18.20798 -17.25867 -16.93124 -16.55943 -15.78384 -15.27116 -15.10709 -14.71378 -14.53661 -14.45372 -14.02937 -13.45942 -13.11608 -12.69646 -12.45001 -11.96006 -11.61278 -11.28215 -11.17478 -11.04539 -10.41445 -10.18822 -9.80206 -8.88071 -8.29236 -8.28368 -7.91925 -6.12711 -3.85083 1.42580 1.45442 3.26043 3.26264 3.30316 3.70714 4.20822 4.34413 4.62493 4.78568 4.85136 5.13791 5.31263 5.32748 5.41206 5.42336 5.54841 6.09472 6.40434 6.45329 6.51137 6.61463 6.93125 7.23055 7.27522 7.36698 8.22112 9.28538 9.88782 11.06184 Molecular weight = 229.07amu Principal moments of inertia in cm(-1) A = 0.040537 B = 0.007736 C = 0.007146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.553243 B = 3618.805793 C = 3917.131341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.036 3.964 3 Si 0.936 3.064 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.378 4.378 8 H 0.071 0.929 9 O -0.220 6.220 10 C 0.079 3.921 11 C 0.095 3.905 12 F -0.124 7.124 13 C -0.155 4.155 14 C -0.068 4.068 15 C 0.110 3.890 16 N -0.846 5.846 17 C -0.137 4.137 18 C 0.095 3.905 19 F -0.124 7.124 20 H 0.265 0.735 21 H 0.131 0.869 22 H 0.038 0.962 23 H 0.082 0.918 24 H 0.341 0.659 25 H 0.344 0.656 26 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.918 -12.259 0.958 15.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.165 4.165 3 Si 0.761 3.239 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.454 4.454 8 H 0.089 0.911 9 O -0.132 6.132 10 C 0.030 3.970 11 C 0.075 3.925 12 F -0.103 7.103 13 C -0.175 4.175 14 C -0.068 4.068 15 C -0.020 4.020 16 N -0.377 5.377 17 C -0.157 4.157 18 C 0.075 3.925 19 F -0.102 7.102 20 H 0.074 0.926 21 H 0.149 0.851 22 H 0.056 0.944 23 H 0.101 0.899 24 H 0.154 0.846 25 H 0.157 0.843 26 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.277 -11.782 0.254 14.401 hybrid contribution 0.805 0.789 0.940 1.468 sum 9.082 -10.993 1.194 14.309 Atomic orbital electron populations 1.70024 1.05534 1.26831 1.49414 1.25047 0.95841 0.97935 0.97694 0.85883 0.78578 0.80646 0.78765 1.19903 1.20471 1.19936 1.20893 0.90310 0.80507 1.53738 0.91113 1.83991 1.28432 1.09171 1.91633 1.19233 0.94791 0.93072 0.89869 1.18038 0.98764 0.94105 0.81617 1.91499 1.89621 1.84597 1.44545 1.20832 1.01761 0.96036 0.98848 1.19099 0.99787 0.96464 0.91498 1.20588 0.92861 0.87383 1.01183 1.58696 1.22615 1.04014 1.52330 1.20837 1.00594 0.95145 0.99138 1.18098 0.98664 0.94148 0.81615 1.91502 1.89597 1.84554 1.44527 0.92562 0.85078 0.94404 0.89930 0.84612 0.84329 0.84628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.60 13.67 55.48 0.76 -26.84 15 2 C 0.04 1.05 5.49 -17.52 -0.10 0.95 15 3 Si 0.94 22.13 29.55 -169.99 -5.02 17.11 15 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 7 C -0.38 -11.34 9.82 30.88 0.30 -11.04 15 8 H 0.07 2.01 7.76 -52.49 -0.41 1.60 15 9 O -0.22 -6.60 9.41 -0.09 0.00 -6.60 15 10 C 0.08 1.91 5.61 -39.00 -0.22 1.69 15 11 C 0.10 2.00 7.31 -39.26 -0.29 1.71 15 12 F -0.12 -2.82 17.11 2.25 0.04 -2.78 15 13 C -0.16 -2.48 9.67 -39.53 -0.38 -2.86 15 14 C -0.07 -0.98 5.39 -104.59 -0.56 -1.55 15 15 C 0.11 1.15 6.91 -4.97 -0.03 1.12 15 16 N -0.85 -8.17 9.61 -11.41 -0.11 -8.28 15 17 C -0.14 -2.28 9.67 -39.53 -0.38 -2.66 15 18 C 0.10 2.03 7.31 -39.26 -0.29 1.74 15 19 F -0.12 -2.84 17.11 2.25 0.04 -2.80 15 20 H 0.26 7.67 8.31 -40.82 -0.34 7.33 15 21 H 0.13 1.68 8.06 -52.49 -0.42 1.26 15 22 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 15 23 H 0.08 0.79 8.08 -51.93 -0.42 0.37 15 24 H 0.34 2.39 9.08 -39.29 -0.36 2.03 15 25 H 0.34 3.20 8.98 -39.29 -0.35 2.84 15 26 H 0.14 1.90 8.06 -52.49 -0.42 1.48 15 LS Contribution 251.40 15.07 3.79 3.79 Total: -1.00 -33.81 251.40 -4.39 -38.21 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -1.94 Total: -0.92 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -1.95 Total: -10.89 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.65 Total: -35.12 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: 0.00 Total: -6.60 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.08 Total: -5.58 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -33.81 -4.39 -38.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086894594.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.887 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds