Wall clock time and date at job start Mon Mar 30 2020 03:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86803 * 119.99831 * 2 1 4 4 H 1.48500 * 109.47329 * 240.00301 * 3 2 1 5 5 H 1.48496 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46622 * 120.00551 * 3 2 1 7 7 C 1.38643 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00072 * 179.97438 * 7 2 1 9 9 O 1.34802 * 119.99880 * 359.97438 * 7 2 1 10 10 C 1.35820 * 117.00233 * 180.02562 * 9 7 2 11 11 C 1.39022 * 120.08839 * 89.99210 * 10 9 7 12 12 F 1.35096 * 120.04304 * 0.02562 * 11 10 9 13 13 C 1.38327 * 119.91333 * 180.02562 * 11 10 9 14 14 C 1.38287 * 120.08825 * 0.02562 * 13 11 10 15 15 C 1.50697 * 119.91593 * 179.97438 * 14 13 11 16 16 N 1.46905 * 109.47110 * 89.99972 * 15 14 13 17 17 C 1.38285 * 120.17510 * 0.27216 * 14 13 11 18 18 C 1.38334 * 120.08625 * 359.44847 * 17 14 13 19 19 F 1.35096 * 120.04596 * 180.29318 * 18 17 14 20 20 H 0.97001 * 119.99947 * 359.97438 * 1 2 3 21 21 H 1.07994 * 119.95868 * 180.02562 * 13 11 10 22 22 H 1.09002 * 109.47000 * 329.99968 * 15 14 13 23 23 H 1.08995 * 109.47308 * 210.00109 * 15 14 13 24 24 H 1.00901 * 110.99869 * 180.02562 * 16 15 14 25 25 H 1.00896 * 110.99543 * 303.95619 * 16 15 14 26 26 H 1.08001 * 119.96304 * 179.70591 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6966 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1035 1.6963 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0745 -3.5072 -0.0005 11 6 2.4542 -4.0917 1.2024 12 9 2.0875 -3.5276 2.3739 13 6 3.2080 -5.2515 1.1981 14 6 3.5843 -5.8294 -0.0005 15 6 4.4060 -7.0927 -0.0006 16 7 3.5119 -8.2583 -0.0010 17 6 3.2138 -5.2478 -1.1992 18 6 2.4552 -4.0910 -1.2034 19 9 2.0887 -3.5268 -2.3749 20 1 -0.4850 0.8401 0.0004 21 1 3.5030 -5.7064 2.1321 22 1 5.0346 -7.1173 0.8896 23 1 5.0350 -7.1169 -0.8904 24 1 4.0393 -9.1185 -0.0007 25 1 2.8742 -8.2251 0.7802 26 1 3.5137 -5.6994 -2.1333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086894594.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:28 Heat of formation + Delta-G solvation = -117.891576 kcal Electronic energy + Delta-G solvation = -15569.655927 eV Core-core repulsion = 12477.076281 eV Total energy + Delta-G solvation = -3092.579647 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.065 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.91830 -49.87628 -40.47213 -38.71514 -35.30573 -34.09045 -31.37676 -30.68707 -27.31925 -25.53847 -23.98037 -22.47912 -20.25958 -18.90068 -18.52641 -18.32517 -17.01545 -16.84937 -16.56066 -16.36402 -16.26209 -15.78501 -15.38662 -15.22988 -14.66127 -14.38468 -13.89712 -13.62193 -13.16546 -12.85428 -12.76517 -12.51569 -12.19502 -11.99689 -11.87134 -10.47428 -9.79443 -9.67932 -9.44374 -8.34619 -6.13869 -0.07782 -0.04147 1.32651 1.42292 1.49502 2.15021 2.36127 2.84738 2.98200 3.39338 3.55041 3.60715 3.93087 3.95949 4.10848 4.45324 4.57386 4.86243 4.90556 4.96305 5.00341 5.02798 5.28648 5.75436 6.01912 6.24422 6.67968 7.05071 7.81379 8.88339 Molecular weight = 229.07amu Principal moments of inertia in cm(-1) A = 0.040537 B = 0.007736 C = 0.007146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.553243 B = 3618.805793 C = 3917.131341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.030 4.030 3 Si 1.015 2.985 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.394 4.394 8 H 0.073 0.927 9 O -0.267 6.267 10 C 0.019 3.981 11 C 0.072 3.928 12 F -0.143 7.143 13 C -0.129 4.129 14 C -0.043 4.043 15 C 0.113 3.887 16 N -0.857 5.857 17 C -0.119 4.119 18 C 0.070 3.930 19 F -0.143 7.143 20 H 0.268 0.732 21 H 0.174 0.826 22 H 0.066 0.934 23 H 0.100 0.900 24 H 0.360 0.640 25 H 0.347 0.653 26 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.641 -14.106 1.180 18.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.225 4.225 3 Si 0.834 3.166 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.470 4.470 8 H 0.091 0.909 9 O -0.181 6.181 10 C -0.028 4.028 11 C 0.052 3.948 12 F -0.121 7.121 13 C -0.148 4.148 14 C -0.044 4.044 15 C -0.017 4.017 16 N -0.389 5.389 17 C -0.138 4.138 18 C 0.050 3.950 19 F -0.122 7.122 20 H 0.077 0.923 21 H 0.191 0.809 22 H 0.084 0.916 23 H 0.119 0.881 24 H 0.175 0.825 25 H 0.159 0.841 26 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 11.023 -13.685 0.477 17.579 hybrid contribution 0.036 1.105 0.872 1.408 sum 11.059 -12.580 1.349 16.804 Atomic orbital electron populations 1.70188 1.07743 1.28203 1.51196 1.26423 0.96960 1.02209 0.96879 0.84719 0.77380 0.74798 0.79658 1.18431 1.19420 1.18386 1.21352 0.90672 0.81662 1.53342 0.90884 1.83935 1.31061 1.10666 1.92397 1.19756 0.98176 0.92579 0.92292 1.18339 1.00515 0.95899 0.80036 1.91441 1.90147 1.85302 1.45239 1.21250 0.98799 0.93394 1.01381 1.19716 0.97595 0.97195 0.89908 1.20673 0.92332 0.85107 1.03541 1.58639 1.22980 1.04581 1.52719 1.21228 0.98162 0.92833 1.01589 1.18401 1.00527 0.95911 0.80119 1.91438 1.90156 1.85273 1.45346 0.92274 0.80905 0.91637 0.88149 0.82523 0.84056 0.81375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.19 13.67 21.61 0.30 -60.90 15 2 C -0.03 -1.83 5.49 84.83 0.47 -1.36 15 3 Si 1.02 46.25 29.55 68.60 2.03 48.28 15 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 15 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 6 H -0.26 -11.09 7.11 99.48 0.71 -10.38 15 7 C -0.39 -24.77 9.82 67.92 0.67 -24.11 15 8 H 0.07 4.33 7.76 -2.91 -0.02 4.30 15 9 O -0.27 -17.04 9.41 -23.24 -0.22 -17.26 15 10 C 0.02 0.95 5.61 22.65 0.13 1.08 15 11 C 0.07 3.07 7.31 22.48 0.16 3.23 15 12 F -0.14 -6.68 17.11 44.97 0.77 -5.91 15 13 C -0.13 -3.75 9.67 22.30 0.22 -3.53 15 14 C -0.04 -1.09 5.39 -19.84 -0.11 -1.19 15 15 C 0.11 1.72 6.91 85.56 0.59 2.31 15 16 N -0.86 -12.28 9.61 -190.00 -1.83 -14.10 15 17 C -0.12 -3.65 9.67 22.30 0.22 -3.44 15 18 C 0.07 3.06 7.31 22.48 0.16 3.22 15 19 F -0.14 -6.88 17.11 44.97 0.77 -6.11 15 20 H 0.27 16.20 8.31 -92.71 -0.77 15.43 15 21 H 0.17 3.59 8.06 -2.91 -0.02 3.56 15 22 H 0.07 0.73 8.08 -2.39 -0.02 0.71 15 23 H 0.10 1.28 8.08 -2.39 -0.02 1.26 15 24 H 0.36 3.22 9.08 -89.69 -0.81 2.41 15 25 H 0.35 4.85 8.98 -89.70 -0.81 4.05 15 26 H 0.17 4.06 8.06 -2.91 -0.02 4.04 15 Total: -1.00 -79.80 251.40 3.94 -75.85 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -0.38 Total: 3.93 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 2.50 Total: -23.79 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -1.53 Total: -75.00 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.22 Total: -17.26 kcal Atomic # 9 Polarization: -13.56 SS G_CDS: 1.54 Total: -12.02 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -79.80 3.94 -75.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086894594.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.037 kcal (2) G-P(sol) polarization free energy of solvation -79.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds