Wall clock time and date at job start Mon Mar 30 2020 03:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99967 * 2 1 4 4 C 1.53001 * 109.46824 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.46807 * 66.91723 * 4 3 2 6 6 C 1.46900 * 110.99620 * 158.64029 * 5 4 3 7 7 C 1.50697 * 109.47020 * 288.11795 * 6 5 4 8 8 H 1.08000 * 119.99918 * 3.93683 * 7 6 5 9 9 C 1.37884 * 119.99760 * 183.93790 * 7 6 5 10 10 N 1.31506 * 120.00302 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99619 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47353 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47081 * 120.00307 * 11 9 7 14 14 H 1.48505 * 109.46856 * 239.99879 * 11 9 7 15 15 C 1.46898 * 110.99778 * 282.58838 * 5 4 3 16 16 C 1.53781 * 113.61491 * 174.95947 * 15 5 4 17 17 C 1.53783 * 87.08185 * 139.98635 * 16 15 5 18 18 N 1.46888 * 113.61850 * 89.11863 * 17 16 15 19 19 C 1.53779 * 113.61773 * 272.45791 * 15 5 4 20 20 H 1.09005 * 109.46781 * 60.00401 * 1 2 3 21 21 H 1.08999 * 109.47117 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47368 * 300.00195 * 1 2 3 23 23 H 1.09002 * 109.46840 * 59.99387 * 3 2 1 24 24 H 1.08996 * 109.47025 * 299.99571 * 3 2 1 25 25 H 1.08995 * 109.47072 * 306.91483 * 4 3 2 26 26 H 1.09005 * 109.46742 * 186.90904 * 4 3 2 27 27 H 1.09000 * 109.47286 * 48.12015 * 6 5 4 28 28 H 1.09009 * 109.46996 * 168.12068 * 6 5 4 29 29 H 0.96995 * 120.00341 * 179.97438 * 10 9 7 30 30 H 1.09004 * 112.85103 * 43.76582 * 15 5 4 31 31 H 1.09000 * 113.61480 * 25.43491 * 16 15 5 32 32 H 1.09003 * 113.61486 * 254.53399 * 16 15 5 33 33 H 1.09002 * 113.60775 * 219.94199 * 17 16 15 34 34 H 1.00896 * 111.00519 * 180.02562 * 18 17 16 35 35 H 1.00905 * 110.99893 * 303.95624 * 18 17 16 36 36 H 1.08999 * 113.61313 * 105.47103 * 19 15 5 37 37 H 1.08997 * 113.61388 * 334.56625 * 19 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9812 0.6044 -1.2732 6 6 5.3907 0.9258 -1.5334 7 6 5.5162 2.3855 -1.8863 8 1 4.6471 3.0258 -1.8526 9 6 6.7405 2.9036 -2.2522 10 7 7.7986 2.1238 -2.2938 11 14 6.8961 4.7132 -2.6889 12 1 5.5691 5.3682 -2.5652 13 1 7.8583 5.3645 -1.7643 14 1 7.3845 4.8452 -4.0851 15 6 3.7594 -0.8476 -1.2965 16 6 4.0910 -1.4998 -2.6490 17 6 4.6991 -2.6642 -1.8495 18 7 3.7325 -3.7199 -1.5198 19 6 4.9262 -1.6585 -0.7084 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.6885 1.8464 0.8900 24 1 1.6887 1.8463 -0.8900 25 1 3.8485 0.5408 0.8225 26 1 3.9782 2.1730 0.1243 27 1 5.9820 0.7153 -0.6422 28 1 5.7547 0.3190 -2.3627 29 1 8.6598 2.4881 -2.5515 30 1 2.7845 -1.1333 -0.9013 31 1 4.8227 -0.9431 -3.2346 32 1 3.2099 -1.7798 -3.2265 33 1 5.6217 -3.0542 -2.2795 34 1 4.1719 -4.4620 -0.9962 35 1 2.9422 -3.3429 -1.0183 36 1 4.7193 -2.0667 0.2809 37 1 5.8861 -1.1452 -0.7634 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087653541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:45 Heat of formation + Delta-G solvation = -17.762974 kcal Electronic energy + Delta-G solvation = -16862.154550 eV Core-core repulsion = 14254.389172 eV Total energy + Delta-G solvation = -2607.765378 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.38603 -37.49376 -34.97158 -32.47489 -30.75315 -28.97004 -26.54643 -25.87886 -25.06559 -23.07975 -22.31329 -20.35157 -17.87952 -16.78434 -16.18335 -15.84908 -15.61147 -14.79855 -14.66949 -14.48528 -14.06605 -13.54313 -12.98932 -12.67478 -12.33580 -12.01271 -11.89609 -11.54235 -11.33509 -11.02207 -10.96327 -10.71247 -10.45540 -10.36788 -10.02972 -9.83834 -9.61106 -9.19803 -9.04176 -8.44274 -8.35307 -7.08407 -6.01524 -4.02427 3.30734 3.38471 3.42815 4.10032 4.43210 4.78880 4.91973 5.19303 5.31125 5.35036 5.37021 5.47109 5.61604 5.65471 5.72835 5.76068 5.84899 5.98251 6.25250 6.29966 6.39841 6.47801 6.57368 6.63253 6.67843 6.93868 7.33371 7.36788 7.46225 7.50398 7.67063 7.85134 8.17966 8.31710 8.61947 9.05968 9.61711 11.08949 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.022864 B = 0.008723 C = 0.006691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.331283 B = 3209.317993 C = 4183.857600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.067 3.933 4 C 0.064 3.936 5 N -0.522 5.522 6 C 0.190 3.810 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.284 1.284 15 C 0.065 3.935 16 C -0.125 4.125 17 C 0.068 3.932 18 N -0.830 5.830 19 C -0.215 4.215 20 H 0.038 0.962 21 H 0.078 0.922 22 H 0.033 0.967 23 H 0.040 0.960 24 H 0.057 0.943 25 H 0.027 0.973 26 H 0.095 0.905 27 H -0.010 1.010 28 H 0.038 0.962 29 H 0.260 0.740 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.336 0.664 35 H 0.340 0.660 36 H 0.049 0.951 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.170 -5.999 4.676 12.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.009 4.009 4 C -0.065 4.065 5 N -0.245 5.245 6 C 0.066 3.934 7 C -0.545 4.545 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.210 1.210 15 C -0.044 4.044 16 C -0.164 4.164 17 C -0.045 4.045 18 N -0.358 5.358 19 C -0.256 4.256 20 H 0.057 0.943 21 H 0.097 0.903 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.046 0.954 26 H 0.113 0.887 27 H 0.007 0.993 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.129 0.871 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.068 0.932 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.225 -6.024 3.455 12.361 hybrid contribution 0.770 1.147 1.431 1.989 sum -9.455 -4.876 4.887 11.707 Atomic orbital electron populations 1.22662 0.82444 1.01972 0.99487 1.87873 1.18558 1.28951 1.95218 1.22751 0.94820 0.83912 0.99448 1.22003 0.91712 1.01141 0.91599 1.62012 1.24120 1.08477 1.29877 1.19792 0.81406 0.96654 0.95586 1.21248 0.94133 0.94215 1.44872 0.92005 1.24979 0.95838 0.97970 0.95818 1.69956 0.99737 1.35258 1.48868 0.86485 0.78001 0.85172 0.78010 1.19724 1.21194 1.21041 1.23407 0.97487 0.87856 0.95661 1.23216 1.01048 0.94968 0.97145 1.22361 0.94872 0.90364 0.96890 1.58749 1.11183 1.12756 1.53076 1.24513 1.02942 1.00575 0.97587 0.94313 0.90321 0.94813 0.94142 0.92510 0.95439 0.88708 0.99277 0.94390 0.93032 0.87108 0.88854 0.91715 0.89955 0.85243 0.84707 0.93234 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.39 -6.03 7.90 -35.23 -0.28 -6.31 16 3 C 0.07 1.09 6.26 37.16 0.23 1.32 16 4 C 0.06 1.24 5.36 -3.82 -0.02 1.22 16 5 N -0.52 -11.29 4.49 -227.11 -1.02 -12.31 16 6 C 0.19 4.86 3.24 -4.98 -0.02 4.85 16 7 C -0.51 -14.06 8.39 -34.44 -0.29 -14.34 16 8 H 0.06 1.70 7.59 -52.49 -0.40 1.31 16 9 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 11 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.07 1.23 3.23 -66.90 -0.22 1.02 16 16 C -0.13 -2.31 7.33 -25.92 -0.19 -2.50 16 17 C 0.07 1.10 5.18 -66.90 -0.35 0.75 16 18 N -0.83 -11.37 9.64 -3.98 -0.04 -11.41 16 19 C -0.21 -3.87 7.03 -25.92 -0.18 -4.05 16 20 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 21 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.03 0.53 7.96 -51.93 -0.41 0.11 16 26 H 0.09 1.95 6.97 -51.93 -0.36 1.59 16 27 H -0.01 -0.29 7.00 -51.93 -0.36 -0.65 16 28 H 0.04 1.04 5.81 -51.92 -0.30 0.74 16 29 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.11 2.01 4.91 -51.93 -0.25 1.76 16 31 H 0.09 1.94 6.33 -51.93 -0.33 1.61 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.34 3.91 9.08 -39.29 -0.36 3.55 16 35 H 0.34 4.52 8.15 -39.29 -0.32 4.20 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 2.01 5.77 -51.93 -0.30 1.71 16 LS Contribution 291.67 15.07 4.40 4.40 Total: -1.00 -29.53 291.67 -7.15 -36.68 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.92 Total: 6.99 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -0.01 Total: -8.80 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.32 Total: -49.48 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.28 Total: -6.31 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.53 -7.15 -36.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087653541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.918 kcal (2) G-P(sol) polarization free energy of solvation -29.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds