Wall clock time and date at job start Mon Mar 30 2020 03:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99967 * 2 1 4 4 C 1.53001 * 109.46824 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.46807 * 66.91723 * 4 3 2 6 6 C 1.46900 * 110.99620 * 158.64029 * 5 4 3 7 7 C 1.50697 * 109.47020 * 288.11795 * 6 5 4 8 8 H 1.08000 * 119.99918 * 3.93683 * 7 6 5 9 9 C 1.37884 * 119.99760 * 183.93790 * 7 6 5 10 10 N 1.31506 * 120.00302 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99619 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47353 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47081 * 120.00307 * 11 9 7 14 14 H 1.48505 * 109.46856 * 239.99879 * 11 9 7 15 15 C 1.46898 * 110.99778 * 282.58838 * 5 4 3 16 16 C 1.53781 * 113.61491 * 174.95947 * 15 5 4 17 17 C 1.53783 * 87.08185 * 139.98635 * 16 15 5 18 18 N 1.46888 * 113.61850 * 89.11863 * 17 16 15 19 19 C 1.53779 * 113.61773 * 272.45791 * 15 5 4 20 20 H 1.09005 * 109.46781 * 60.00401 * 1 2 3 21 21 H 1.08999 * 109.47117 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47368 * 300.00195 * 1 2 3 23 23 H 1.09002 * 109.46840 * 59.99387 * 3 2 1 24 24 H 1.08996 * 109.47025 * 299.99571 * 3 2 1 25 25 H 1.08995 * 109.47072 * 306.91483 * 4 3 2 26 26 H 1.09005 * 109.46742 * 186.90904 * 4 3 2 27 27 H 1.09000 * 109.47286 * 48.12015 * 6 5 4 28 28 H 1.09009 * 109.46996 * 168.12068 * 6 5 4 29 29 H 0.96995 * 120.00341 * 179.97438 * 10 9 7 30 30 H 1.09004 * 112.85103 * 43.76582 * 15 5 4 31 31 H 1.09000 * 113.61480 * 25.43491 * 16 15 5 32 32 H 1.09003 * 113.61486 * 254.53399 * 16 15 5 33 33 H 1.09002 * 113.60775 * 219.94199 * 17 16 15 34 34 H 1.00896 * 111.00519 * 180.02562 * 18 17 16 35 35 H 1.00905 * 110.99893 * 303.95624 * 18 17 16 36 36 H 1.08999 * 113.61313 * 105.47103 * 19 15 5 37 37 H 1.08997 * 113.61388 * 334.56625 * 19 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9812 0.6044 -1.2732 6 6 5.3907 0.9258 -1.5334 7 6 5.5162 2.3855 -1.8863 8 1 4.6471 3.0258 -1.8526 9 6 6.7405 2.9036 -2.2522 10 7 7.7986 2.1238 -2.2938 11 14 6.8961 4.7132 -2.6889 12 1 5.5691 5.3682 -2.5652 13 1 7.8583 5.3645 -1.7643 14 1 7.3845 4.8452 -4.0851 15 6 3.7594 -0.8476 -1.2965 16 6 4.0910 -1.4998 -2.6490 17 6 4.6991 -2.6642 -1.8495 18 7 3.7325 -3.7199 -1.5198 19 6 4.9262 -1.6585 -0.7084 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.6885 1.8464 0.8900 24 1 1.6887 1.8463 -0.8900 25 1 3.8485 0.5408 0.8225 26 1 3.9782 2.1730 0.1243 27 1 5.9820 0.7153 -0.6422 28 1 5.7547 0.3190 -2.3627 29 1 8.6598 2.4881 -2.5515 30 1 2.7845 -1.1333 -0.9013 31 1 4.8227 -0.9431 -3.2346 32 1 3.2099 -1.7798 -3.2265 33 1 5.6217 -3.0542 -2.2795 34 1 4.1719 -4.4620 -0.9962 35 1 2.9422 -3.3429 -1.0183 36 1 4.7193 -2.0667 0.2809 37 1 5.8861 -1.1452 -0.7634 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087653541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:45 Heat of formation + Delta-G solvation = -40.255210 kcal Electronic energy + Delta-G solvation = -16863.129886 eV Core-core repulsion = 14254.389172 eV Total energy + Delta-G solvation = -2608.740715 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.90874 -38.69344 -36.59774 -34.54223 -32.04229 -30.59203 -28.32229 -26.98960 -26.57684 -24.91047 -23.83513 -21.91924 -19.47417 -18.65331 -17.48660 -17.37730 -16.97725 -16.42701 -16.06311 -15.91467 -15.57590 -15.06694 -14.61456 -14.05475 -13.90785 -13.75508 -13.43474 -13.08433 -12.80742 -12.72462 -12.59147 -12.26600 -12.21270 -12.02233 -11.59943 -11.53534 -11.18784 -10.98758 -10.58895 -10.37328 -9.62207 -8.84249 -8.17802 -6.27502 1.40264 1.41448 1.54423 2.41025 2.95152 3.13460 3.30760 3.54300 3.74343 3.92508 4.12092 4.19809 4.29590 4.40843 4.49968 4.63477 4.68234 4.77114 4.85905 4.88837 4.89320 4.95889 5.03279 5.09390 5.18901 5.26745 5.34059 5.57542 5.68764 6.12815 6.22254 6.32411 6.51035 6.63221 6.74207 6.90344 7.42042 8.92564 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.022864 B = 0.008723 C = 0.006691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.331283 B = 3209.317993 C = 4183.857600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.079 3.921 4 C 0.063 3.937 5 N -0.531 5.531 6 C 0.212 3.788 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.002 3.998 10 N -0.934 5.934 11 Si 0.966 3.034 12 H -0.263 1.263 13 H -0.279 1.279 14 H -0.280 1.280 15 C 0.066 3.934 16 C -0.128 4.128 17 C 0.087 3.913 18 N -0.821 5.821 19 C -0.211 4.211 20 H 0.041 0.959 21 H 0.098 0.902 22 H 0.050 0.950 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.026 0.974 26 H 0.076 0.924 27 H -0.040 1.040 28 H 0.012 0.988 29 H 0.263 0.737 30 H 0.128 0.872 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.352 0.648 35 H 0.347 0.653 36 H 0.064 0.936 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.975 -6.096 5.140 14.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C 0.002 3.998 4 C -0.066 4.066 5 N -0.253 5.253 6 C 0.086 3.914 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.196 4.196 10 N -0.575 5.575 11 Si 0.791 3.209 12 H -0.187 1.187 13 H -0.205 1.205 14 H -0.206 1.206 15 C -0.043 4.043 16 C -0.167 4.167 17 C -0.026 4.026 18 N -0.350 5.350 19 C -0.252 4.252 20 H 0.059 0.941 21 H 0.116 0.884 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.044 0.956 26 H 0.094 0.906 27 H -0.022 1.022 28 H 0.030 0.970 29 H 0.072 0.928 30 H 0.145 0.855 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.083 0.917 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.061 -6.142 3.935 14.095 hybrid contribution 1.267 1.106 1.318 2.136 sum -10.794 -5.036 5.253 13.018 Atomic orbital electron populations 1.22889 0.80058 1.03624 1.00436 1.87793 1.21021 1.28309 1.95405 1.22509 0.92200 0.84624 1.00427 1.22009 0.94344 0.99828 0.90378 1.61975 1.21236 1.10601 1.31511 1.19366 0.83445 0.95350 0.93207 1.21571 0.94304 0.95315 1.44872 0.92104 1.25876 0.95415 1.02732 0.95580 1.70086 1.00306 1.37409 1.49679 0.85382 0.78360 0.79426 0.77736 1.18690 1.20475 1.20614 1.23521 0.98382 0.86237 0.96113 1.23133 1.00731 0.95835 0.96964 1.22143 0.95211 0.90170 0.95060 1.58678 1.10651 1.11993 1.53722 1.24372 1.00715 1.00969 0.99170 0.94064 0.88398 0.93130 0.91383 0.93234 0.95569 0.90589 1.02197 0.96975 0.92821 0.85458 0.92002 0.90698 0.89922 0.83425 0.83978 0.91708 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.41 -11.66 7.90 -148.98 -1.18 -12.84 16 3 C 0.08 2.43 6.26 71.98 0.45 2.88 16 4 C 0.06 2.43 5.36 86.30 0.46 2.90 16 5 N -0.53 -23.39 4.49 -872.43 -3.92 -27.31 16 6 C 0.21 11.35 3.24 85.56 0.28 11.63 16 7 C -0.52 -29.79 8.39 25.60 0.21 -29.57 16 8 H 0.06 3.40 7.59 -2.91 -0.02 3.38 16 9 C 0.00 0.10 5.46 84.66 0.46 0.56 16 10 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 11 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 12 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 13 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 14 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 15 C 0.07 2.49 3.23 45.44 0.15 2.63 16 16 C -0.13 -4.74 7.33 31.12 0.23 -4.51 16 17 C 0.09 2.78 5.18 45.45 0.24 3.01 16 18 N -0.82 -20.50 9.64 -166.51 -1.60 -22.10 16 19 C -0.21 -7.64 7.03 31.12 0.22 -7.42 16 20 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 21 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 23 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.03 1.01 7.96 -2.39 -0.02 0.99 16 26 H 0.08 3.20 6.97 -2.38 -0.02 3.18 16 27 H -0.04 -2.30 7.00 -2.39 -0.02 -2.32 16 28 H 0.01 0.71 5.81 -2.38 -0.01 0.70 16 29 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.13 4.41 4.91 -2.39 -0.01 4.39 16 31 H 0.06 2.69 6.33 -2.39 -0.02 2.67 16 32 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.35 7.19 9.08 -89.70 -0.81 6.37 16 35 H 0.35 8.18 8.15 -89.69 -0.73 7.45 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.06 2.63 5.77 -2.39 -0.01 2.62 16 Total: -1.00 -64.43 291.67 -0.92 -65.36 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: -0.48 Total: 22.72 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 3.94 Total: -16.11 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -5.24 Total: -105.72 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -1.18 Total: -12.84 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -64.43 -0.92 -65.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087653541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.102 kcal (2) G-P(sol) polarization free energy of solvation -64.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds