Wall clock time and date at job start Mon Mar 30 2020 03:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00012 * 2 1 4 4 H 1.48494 * 109.47206 * 269.99917 * 3 2 1 5 5 H 1.48501 * 109.47166 * 30.00075 * 3 2 1 6 6 H 1.48504 * 109.47361 * 150.00003 * 3 2 1 7 7 C 1.37882 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99513 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99892 * 179.97438 * 7 2 1 10 10 O 1.42102 * 103.00033 * 286.87642 * 9 7 2 11 11 C 1.76202 * 102.99838 * 180.02562 * 9 7 2 12 12 C 1.38272 * 119.93804 * 95.00048 * 11 9 7 13 13 C 1.38097 * 120.09526 * 180.02562 * 12 11 9 14 14 C 1.38951 * 119.97663 * 0.26201 * 13 12 11 15 15 N 1.39663 * 120.05767 * 179.71582 * 14 13 12 16 16 C 1.38845 * 119.87614 * 359.43974 * 14 13 12 17 17 C 1.38350 * 119.89946 * 0.55647 * 16 14 13 18 18 F 1.35098 * 119.98613 * 179.72032 * 17 16 14 19 19 H 0.97003 * 120.00125 * 359.97438 * 1 2 3 20 20 H 1.07994 * 119.95256 * 0.02562 * 12 11 9 21 21 H 1.08002 * 120.00722 * 179.97438 * 13 12 11 22 22 H 0.96999 * 120.00373 * 359.97438 * 15 14 13 23 23 H 0.97005 * 119.99998 * 179.97438 * 15 14 13 24 24 H 1.08003 * 120.05180 * 180.28007 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 16 3.7666 -1.1941 -0.0001 10 8 4.0857 -0.7930 -1.3255 11 6 4.1629 -2.9110 0.0001 12 6 4.4194 -3.5601 -1.1935 13 6 4.7298 -4.9058 -1.1972 14 6 4.7792 -5.6101 -0.0004 15 7 5.0871 -6.9724 -0.0027 16 6 4.5276 -4.9558 1.1981 17 6 4.2171 -3.6076 1.1958 18 9 3.9664 -2.9705 2.3605 19 1 -0.4850 0.8401 0.0004 20 1 4.3769 -3.0141 -2.1243 21 1 4.9295 -5.4115 -2.1303 22 1 5.2664 -7.4278 -0.8402 23 1 5.1218 -7.4632 0.8333 24 1 4.5697 -5.4995 2.1303 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088064222.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:24 Heat of formation + Delta-G solvation = -62.759175 kcal Electronic energy + Delta-G solvation = -13468.797783 eV Core-core repulsion = 10808.988939 eV Total energy + Delta-G solvation = -2659.808845 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.031 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.38019 -38.69335 -34.27276 -33.83641 -32.69966 -30.11631 -28.35340 -25.88421 -22.50220 -22.02498 -18.20621 -17.48749 -17.06578 -16.32957 -15.59749 -15.11039 -15.04065 -14.82649 -14.16302 -13.45235 -12.87985 -12.73605 -12.55676 -12.37169 -11.92156 -11.40049 -11.08608 -10.67633 -10.63767 -10.23855 -9.94620 -8.99159 -8.67450 -8.39505 -7.59150 -6.93306 -6.47953 -4.74252 1.65149 1.73275 3.05611 3.11774 3.30478 3.61778 3.84114 4.03564 4.10549 4.79084 4.85867 5.05218 5.17244 5.34966 5.66549 5.95259 5.98755 6.21231 6.52854 6.55017 6.86215 7.16291 7.55744 7.75060 7.78314 8.54325 9.02912 10.63269 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.045241 B = 0.008882 C = 0.008520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.757277 B = 3151.608793 C = 3285.606479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.131 3.869 3 Si 0.840 3.160 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.242 1.242 7 C -0.813 4.813 8 H 0.095 0.905 9 S 1.353 4.647 10 O -0.922 6.922 11 C -0.512 4.512 12 C 0.018 3.982 13 C -0.227 4.227 14 C 0.249 3.751 15 N -0.877 5.877 16 C -0.255 4.255 17 C 0.209 3.791 18 F -0.128 7.128 19 H 0.274 0.726 20 H 0.136 0.864 21 H 0.119 0.881 22 H 0.398 0.602 23 H 0.397 0.603 24 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.888 -8.858 4.537 14.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.083 4.083 3 Si 0.663 3.337 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.166 1.166 7 C -0.954 4.954 8 H 0.113 0.887 9 S 1.553 4.447 10 O -0.916 6.916 11 C -0.607 4.607 12 C -0.002 4.002 13 C -0.251 4.251 14 C 0.144 3.856 15 N -0.416 5.416 16 C -0.279 4.279 17 C 0.188 3.812 18 F -0.106 7.106 19 H 0.084 0.916 20 H 0.154 0.846 21 H 0.137 0.863 22 H 0.226 0.774 23 H 0.225 0.775 24 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.362 -7.963 4.553 13.838 hybrid contribution -0.960 -0.920 -1.517 2.017 sum 9.402 -8.883 3.036 13.286 Atomic orbital electron populations 1.70011 1.06640 1.28184 1.43506 1.24609 0.94510 0.98873 0.90300 0.87208 0.81178 0.84417 0.80879 1.18200 1.18869 1.16624 1.27338 1.07997 0.99437 1.60627 0.88691 1.68100 0.90892 0.80210 1.05465 1.92810 1.84086 1.73743 1.41001 1.28154 1.14772 1.23170 0.94601 1.20735 0.89100 0.92630 0.97722 1.20659 1.12892 0.95442 0.96066 1.17448 0.90838 0.84070 0.93204 1.42430 1.80759 1.07079 1.11311 1.20364 1.15854 0.94138 0.97562 1.16787 0.94449 0.89379 0.80612 1.91504 1.91008 1.81962 1.46129 0.91602 0.84625 0.86264 0.77409 0.77531 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.50 13.96 55.43 0.77 -24.73 14 2 C 0.13 3.79 5.47 -17.82 -0.10 3.69 14 3 Si 0.84 20.50 27.12 -169.99 -4.61 15.89 14 4 H -0.26 -6.61 7.11 56.52 0.40 -6.21 14 5 H -0.26 -5.95 7.11 56.52 0.40 -5.55 14 6 H -0.24 -5.19 6.73 56.52 0.38 -4.81 14 7 C -0.81 -23.58 9.88 30.60 0.30 -23.27 14 8 H 0.09 2.99 8.06 -52.49 -0.42 2.57 14 9 S 1.35 32.98 11.29 -107.50 -1.21 31.76 14 10 O -0.92 -26.26 15.57 -35.23 -0.55 -26.81 14 11 C -0.51 -11.14 5.61 -39.48 -0.22 -11.36 14 12 C 0.02 0.37 9.45 -39.62 -0.37 -0.01 14 13 C -0.23 -3.80 9.89 -39.37 -0.39 -4.19 14 14 C 0.25 3.74 6.75 -83.80 -0.57 3.17 14 15 N -0.88 -8.95 9.09 32.40 0.29 -8.66 14 16 C -0.25 -4.10 9.87 -39.32 -0.39 -4.49 14 17 C 0.21 4.00 7.25 -39.45 -0.29 3.72 14 18 F -0.13 -2.35 16.73 2.25 0.04 -2.31 14 19 H 0.27 7.47 8.31 -40.82 -0.34 7.13 14 20 H 0.14 2.99 7.21 -52.49 -0.38 2.61 14 21 H 0.12 1.66 8.06 -52.49 -0.42 1.24 14 22 H 0.40 3.24 8.84 -40.82 -0.36 2.88 14 23 H 0.40 3.16 8.84 -40.82 -0.36 2.80 14 24 H 0.13 1.69 8.06 -52.48 -0.42 1.26 14 LS Contribution 236.26 15.07 3.56 3.56 Total: -1.00 -34.86 236.26 -5.25 -40.12 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -1.53 Total: 3.92 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: -2.02 Total: -32.74 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 1.07 Total: -33.38 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.55 Total: -26.81 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.61 Total: 15.89 kcal Atomic # 16 Polarization: 32.98 SS G_CDS: -1.21 Total: 31.76 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -34.86 -5.25 -40.12 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088064222.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.643 kcal (2) G-P(sol) polarization free energy of solvation -34.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds