Wall clock time and date at job start Mon Mar 30 2020 03:16:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86791 * 120.00012 * 2 1
4 4 H 1.48494 * 109.47206 * 269.99917 * 3 2 1
5 5 H 1.48501 * 109.47166 * 30.00075 * 3 2 1
6 6 H 1.48504 * 109.47361 * 150.00003 * 3 2 1
7 7 C 1.37882 * 119.99867 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99513 * 0.02562 * 7 2 1
9 9 S 1.76199 * 119.99892 * 179.97438 * 7 2 1
10 10 O 1.42102 * 103.00033 * 286.87642 * 9 7 2
11 11 C 1.76202 * 102.99838 * 180.02562 * 9 7 2
12 12 C 1.38272 * 119.93804 * 95.00048 * 11 9 7
13 13 C 1.38097 * 120.09526 * 180.02562 * 12 11 9
14 14 C 1.38951 * 119.97663 * 0.26201 * 13 12 11
15 15 N 1.39663 * 120.05767 * 179.71582 * 14 13 12
16 16 C 1.38845 * 119.87614 * 359.43974 * 14 13 12
17 17 C 1.38350 * 119.89946 * 0.55647 * 16 14 13
18 18 F 1.35098 * 119.98613 * 179.72032 * 17 16 14
19 19 H 0.97003 * 120.00125 * 359.97438 * 1 2 3
20 20 H 1.07994 * 119.95256 * 0.02562 * 12 11 9
21 21 H 1.08002 * 120.00722 * 179.97438 * 13 12 11
22 22 H 0.96999 * 120.00373 * 359.97438 * 15 14 13
23 23 H 0.97005 * 119.99998 * 179.97438 * 15 14 13
24 24 H 1.08003 * 120.05180 * 180.28007 * 16 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0463 -1.4000
5 1 1.4466 2.6526 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0046 -1.1941 0.0005
8 1 1.4645 -2.1294 0.0005
9 16 3.7666 -1.1941 -0.0001
10 8 4.0857 -0.7930 -1.3255
11 6 4.1629 -2.9110 0.0001
12 6 4.4194 -3.5601 -1.1935
13 6 4.7298 -4.9058 -1.1972
14 6 4.7792 -5.6101 -0.0004
15 7 5.0871 -6.9724 -0.0027
16 6 4.5276 -4.9558 1.1981
17 6 4.2171 -3.6076 1.1958
18 9 3.9664 -2.9705 2.3605
19 1 -0.4850 0.8401 0.0004
20 1 4.3769 -3.0141 -2.1243
21 1 4.9295 -5.4115 -2.1303
22 1 5.2664 -7.4278 -0.8402
23 1 5.1218 -7.4632 0.8333
24 1 4.5697 -5.4995 2.1303
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000088064222.mol2 24
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:16:24
Heat of formation + Delta-G solvation = -62.759175 kcal
Electronic energy + Delta-G solvation = -13468.797783 eV
Core-core repulsion = 10808.988939 eV
Total energy + Delta-G solvation = -2659.808845 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 229.031 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-48.38019 -38.69335 -34.27276 -33.83641 -32.69966 -30.11631 -28.35340 -25.88421
-22.50220 -22.02498 -18.20621 -17.48749 -17.06578 -16.32957 -15.59749 -15.11039
-15.04065 -14.82649 -14.16302 -13.45235 -12.87985 -12.73605 -12.55676 -12.37169
-11.92156 -11.40049 -11.08608 -10.67633 -10.63767 -10.23855 -9.94620 -8.99159
-8.67450 -8.39505 -7.59150 -6.93306 -6.47953 -4.74252 1.65149 1.73275
3.05611 3.11774 3.30478 3.61778 3.84114 4.03564 4.10549 4.79084
4.85867 5.05218 5.17244 5.34966 5.66549 5.95259 5.98755 6.21231
6.52854 6.55017 6.86215 7.16291 7.55744 7.75060 7.78314 8.54325
9.02912 10.63269
Molecular weight = 229.03amu
Principal moments of inertia in cm(-1)
A = 0.045241 B = 0.008882 C = 0.008520
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 618.757277 B = 3151.608793 C = 3285.606479
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.850 5.850
2 C 0.131 3.869
3 Si 0.840 3.160
4 H -0.258 1.258
5 H -0.264 1.264
6 H -0.242 1.242
7 C -0.813 4.813
8 H 0.095 0.905
9 S 1.353 4.647
10 O -0.922 6.922
11 C -0.512 4.512
12 C 0.018 3.982
13 C -0.227 4.227
14 C 0.249 3.751
15 N -0.877 5.877
16 C -0.255 4.255
17 C 0.209 3.791
18 F -0.128 7.128
19 H 0.274 0.726
20 H 0.136 0.864
21 H 0.119 0.881
22 H 0.398 0.602
23 H 0.397 0.603
24 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.888 -8.858 4.537 14.030
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.483 5.483
2 C -0.083 4.083
3 Si 0.663 3.337
4 H -0.182 1.182
5 H -0.189 1.189
6 H -0.166 1.166
7 C -0.954 4.954
8 H 0.113 0.887
9 S 1.553 4.447
10 O -0.916 6.916
11 C -0.607 4.607
12 C -0.002 4.002
13 C -0.251 4.251
14 C 0.144 3.856
15 N -0.416 5.416
16 C -0.279 4.279
17 C 0.188 3.812
18 F -0.106 7.106
19 H 0.084 0.916
20 H 0.154 0.846
21 H 0.137 0.863
22 H 0.226 0.774
23 H 0.225 0.775
24 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 10.362 -7.963 4.553 13.838
hybrid contribution -0.960 -0.920 -1.517 2.017
sum 9.402 -8.883 3.036 13.286
Atomic orbital electron populations
1.70011 1.06640 1.28184 1.43506 1.24609 0.94510 0.98873 0.90300
0.87208 0.81178 0.84417 0.80879 1.18200 1.18869 1.16624 1.27338
1.07997 0.99437 1.60627 0.88691 1.68100 0.90892 0.80210 1.05465
1.92810 1.84086 1.73743 1.41001 1.28154 1.14772 1.23170 0.94601
1.20735 0.89100 0.92630 0.97722 1.20659 1.12892 0.95442 0.96066
1.17448 0.90838 0.84070 0.93204 1.42430 1.80759 1.07079 1.11311
1.20364 1.15854 0.94138 0.97562 1.16787 0.94449 0.89379 0.80612
1.91504 1.91008 1.81962 1.46129 0.91602 0.84625 0.86264 0.77409
0.77531 0.85329
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -25.50 13.96 55.43 0.77 -24.73 14
2 C 0.13 3.79 5.47 -17.82 -0.10 3.69 14
3 Si 0.84 20.50 27.12 -169.99 -4.61 15.89 14
4 H -0.26 -6.61 7.11 56.52 0.40 -6.21 14
5 H -0.26 -5.95 7.11 56.52 0.40 -5.55 14
6 H -0.24 -5.19 6.73 56.52 0.38 -4.81 14
7 C -0.81 -23.58 9.88 30.60 0.30 -23.27 14
8 H 0.09 2.99 8.06 -52.49 -0.42 2.57 14
9 S 1.35 32.98 11.29 -107.50 -1.21 31.76 14
10 O -0.92 -26.26 15.57 -35.23 -0.55 -26.81 14
11 C -0.51 -11.14 5.61 -39.48 -0.22 -11.36 14
12 C 0.02 0.37 9.45 -39.62 -0.37 -0.01 14
13 C -0.23 -3.80 9.89 -39.37 -0.39 -4.19 14
14 C 0.25 3.74 6.75 -83.80 -0.57 3.17 14
15 N -0.88 -8.95 9.09 32.40 0.29 -8.66 14
16 C -0.25 -4.10 9.87 -39.32 -0.39 -4.49 14
17 C 0.21 4.00 7.25 -39.45 -0.29 3.72 14
18 F -0.13 -2.35 16.73 2.25 0.04 -2.31 14
19 H 0.27 7.47 8.31 -40.82 -0.34 7.13 14
20 H 0.14 2.99 7.21 -52.49 -0.38 2.61 14
21 H 0.12 1.66 8.06 -52.49 -0.42 1.24 14
22 H 0.40 3.24 8.84 -40.82 -0.36 2.88 14
23 H 0.40 3.16 8.84 -40.82 -0.36 2.80 14
24 H 0.13 1.69 8.06 -52.48 -0.42 1.26 14
LS Contribution 236.26 15.07 3.56 3.56
Total: -1.00 -34.86 236.26 -5.25 -40.12
By element:
Atomic # 1 Polarization: 5.44 SS G_CDS: -1.53 Total: 3.92 kcal
Atomic # 6 Polarization: -30.71 SS G_CDS: -2.02 Total: -32.74 kcal
Atomic # 7 Polarization: -34.45 SS G_CDS: 1.07 Total: -33.38 kcal
Atomic # 8 Polarization: -26.26 SS G_CDS: -0.55 Total: -26.81 kcal
Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal
Atomic # 14 Polarization: 20.50 SS G_CDS: -4.61 Total: 15.89 kcal
Atomic # 16 Polarization: 32.98 SS G_CDS: -1.21 Total: 31.76 kcal
Total LS contribution 3.56 Total: 3.56 kcal
Total: -34.86 -5.25 -40.12 kcal
The number of atoms in the molecule is 24
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000088064222.mol2 24
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.643 kcal
(2) G-P(sol) polarization free energy of solvation -34.865 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.508 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.251 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.759 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds