Wall clock time and date at job start Mon Mar 30 2020 03:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00012 * 2 1 4 4 H 1.48494 * 109.47206 * 269.99917 * 3 2 1 5 5 H 1.48501 * 109.47166 * 30.00075 * 3 2 1 6 6 H 1.48504 * 109.47361 * 150.00003 * 3 2 1 7 7 C 1.37882 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99513 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99892 * 179.97438 * 7 2 1 10 10 O 1.42102 * 103.00033 * 286.87642 * 9 7 2 11 11 C 1.76202 * 102.99838 * 180.02562 * 9 7 2 12 12 C 1.38272 * 119.93804 * 95.00048 * 11 9 7 13 13 C 1.38097 * 120.09526 * 180.02562 * 12 11 9 14 14 C 1.38951 * 119.97663 * 0.26201 * 13 12 11 15 15 N 1.39663 * 120.05767 * 179.71582 * 14 13 12 16 16 C 1.38845 * 119.87614 * 359.43974 * 14 13 12 17 17 C 1.38350 * 119.89946 * 0.55647 * 16 14 13 18 18 F 1.35098 * 119.98613 * 179.72032 * 17 16 14 19 19 H 0.97003 * 120.00125 * 359.97438 * 1 2 3 20 20 H 1.07994 * 119.95256 * 0.02562 * 12 11 9 21 21 H 1.08002 * 120.00722 * 179.97438 * 13 12 11 22 22 H 0.96999 * 120.00373 * 359.97438 * 15 14 13 23 23 H 0.97005 * 119.99998 * 179.97438 * 15 14 13 24 24 H 1.08003 * 120.05180 * 180.28007 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 16 3.7666 -1.1941 -0.0001 10 8 4.0857 -0.7930 -1.3255 11 6 4.1629 -2.9110 0.0001 12 6 4.4194 -3.5601 -1.1935 13 6 4.7298 -4.9058 -1.1972 14 6 4.7792 -5.6101 -0.0004 15 7 5.0871 -6.9724 -0.0027 16 6 4.5276 -4.9558 1.1981 17 6 4.2171 -3.6076 1.1958 18 9 3.9664 -2.9705 2.3605 19 1 -0.4850 0.8401 0.0004 20 1 4.3769 -3.0141 -2.1243 21 1 4.9295 -5.4115 -2.1303 22 1 5.2664 -7.4278 -0.8402 23 1 5.1218 -7.4632 0.8333 24 1 4.5697 -5.4995 2.1303 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088064222.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:24 Heat of formation + Delta-G solvation = -90.922799 kcal Electronic energy + Delta-G solvation = -13470.019050 eV Core-core repulsion = 10808.988939 eV Total energy + Delta-G solvation = -2661.030111 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.031 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.84816 -40.03657 -36.11507 -35.33161 -34.90182 -31.51261 -29.67966 -28.10878 -23.92155 -23.42020 -20.22844 -18.93651 -18.35051 -17.96528 -17.57402 -16.61330 -16.50083 -16.06382 -15.92760 -14.97693 -14.84860 -14.55339 -14.08046 -13.86155 -13.51310 -13.33356 -12.86734 -12.75432 -12.23427 -11.86825 -11.61166 -11.15186 -10.72055 -9.79795 -9.24001 -8.68189 -8.57148 -7.00397 0.18622 0.29953 1.11745 1.25829 1.34314 1.84506 2.09093 2.55088 2.64349 2.76836 3.06676 3.48352 3.63287 3.89197 4.11843 4.51942 4.67520 4.86384 5.08736 5.16095 5.36969 5.59916 5.81744 6.17599 6.43185 6.81235 6.95495 8.48745 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.045241 B = 0.008882 C = 0.008520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.757277 B = 3151.608793 C = 3285.606479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.882 3.118 4 H -0.279 1.279 5 H -0.230 1.230 6 H -0.195 1.195 7 C -0.842 4.842 8 H 0.048 0.952 9 S 1.406 4.594 10 O -0.967 6.967 11 C -0.554 4.554 12 C -0.006 4.006 13 C -0.225 4.225 14 C 0.271 3.729 15 N -0.848 5.848 16 C -0.250 4.250 17 C 0.202 3.798 18 F -0.127 7.127 19 H 0.282 0.718 20 H 0.109 0.891 21 H 0.150 0.850 22 H 0.413 0.587 23 H 0.414 0.586 24 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.894 -10.603 5.722 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.135 4.135 3 Si 0.700 3.300 4 H -0.204 1.204 5 H -0.152 1.152 6 H -0.117 1.117 7 C -0.981 4.981 8 H 0.066 0.934 9 S 1.609 4.391 10 O -0.963 6.963 11 C -0.654 4.654 12 C -0.026 4.026 13 C -0.249 4.249 14 C 0.161 3.839 15 N -0.387 5.387 16 C -0.274 4.274 17 C 0.181 3.819 18 F -0.105 7.105 19 H 0.092 0.908 20 H 0.127 0.873 21 H 0.168 0.832 22 H 0.244 0.756 23 H 0.245 0.755 24 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 12.354 -9.740 5.762 16.753 hybrid contribution -1.540 -0.769 -1.901 2.565 sum 10.813 -10.509 3.861 15.565 Atomic orbital electron populations 1.70100 1.08450 1.29836 1.44642 1.25658 0.95509 1.02878 0.89462 0.86549 0.82750 0.80042 0.80638 1.20421 1.15221 1.11703 1.27940 1.11265 0.97862 1.61006 0.93380 1.67057 0.86543 0.82062 1.03476 1.92708 1.83640 1.76709 1.43204 1.27576 1.19348 1.21765 0.96671 1.20648 0.91054 0.94611 0.96286 1.20861 1.11855 0.93844 0.98302 1.17489 0.88396 0.85848 0.92117 1.42407 1.78016 1.04989 1.13317 1.20708 1.14338 0.92780 0.99604 1.16926 0.94657 0.90621 0.79721 1.91502 1.91051 1.82228 1.45760 0.90805 0.87297 0.83239 0.75592 0.75485 0.81571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.79 13.96 21.45 0.30 -55.49 14 2 C 0.07 4.45 5.47 84.66 0.46 4.92 14 3 Si 0.88 41.86 27.12 68.60 1.86 43.72 14 4 H -0.28 -14.18 7.11 99.48 0.71 -13.47 14 5 H -0.23 -9.57 7.11 99.48 0.71 -8.86 14 6 H -0.20 -7.75 6.73 99.48 0.67 -7.08 14 7 C -0.84 -51.17 9.88 67.74 0.67 -50.50 14 8 H 0.05 3.23 8.06 -2.91 -0.02 3.21 14 9 S 1.41 70.13 11.29 -56.49 -0.64 69.49 14 10 O -0.97 -56.70 15.57 -148.98 -2.32 -59.02 14 11 C -0.55 -24.44 5.61 22.34 0.13 -24.31 14 12 C -0.01 -0.25 9.45 22.24 0.21 -0.04 14 13 C -0.22 -7.00 9.89 22.41 0.22 -6.78 14 14 C 0.27 7.02 6.75 38.21 0.26 7.28 14 15 N -0.85 -12.64 9.09 -51.39 -0.47 -13.11 14 16 C -0.25 -7.15 9.87 22.44 0.22 -6.93 14 17 C 0.20 7.51 7.25 22.36 0.16 7.68 14 18 F -0.13 -4.56 16.73 44.97 0.75 -3.81 14 19 H 0.28 15.86 8.31 -92.71 -0.77 15.09 14 20 H 0.11 5.05 7.21 -2.91 -0.02 5.02 14 21 H 0.15 3.65 8.06 -2.91 -0.02 3.63 14 22 H 0.41 4.39 8.84 -92.71 -0.82 3.57 14 23 H 0.41 4.07 8.84 -92.70 -0.82 3.25 14 24 H 0.17 3.48 8.06 -2.91 -0.02 3.45 14 Total: -1.00 -80.48 236.26 1.40 -79.08 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -0.42 Total: 7.82 kcal Atomic # 6 Polarization: -71.02 SS G_CDS: 2.33 Total: -68.69 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -0.17 Total: -68.60 kcal Atomic # 8 Polarization: -56.70 SS G_CDS: -2.32 Total: -59.02 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.75 Total: -3.81 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.86 Total: 43.72 kcal Atomic # 16 Polarization: 70.13 SS G_CDS: -0.64 Total: 69.49 kcal Total: -80.48 1.40 -79.08 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088064222.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.839 kcal (2) G-P(sol) polarization free energy of solvation -80.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds