Wall clock time and date at job start Mon Mar 30 2020 03:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00358 * 2 1 4 4 H 1.48498 * 109.47210 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46899 * 299.99992 * 3 2 1 6 6 H 1.48499 * 109.47328 * 59.99581 * 3 2 1 7 7 C 1.37875 * 119.99225 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99641 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00646 * 359.97438 * 7 2 1 10 10 O 1.42100 * 103.00024 * 73.12521 * 9 7 2 11 11 C 1.76195 * 103.00013 * 179.97438 * 9 7 2 12 12 C 1.38273 * 119.93518 * 95.00221 * 11 9 7 13 13 C 1.38096 * 120.09537 * 179.71954 * 12 11 9 14 14 C 1.38944 * 119.97897 * 0.27627 * 13 12 11 15 15 N 1.39671 * 120.06236 * 180.02562 * 14 13 12 16 16 C 1.38850 * 119.87397 * 0.02562 * 14 13 12 17 17 C 1.38341 * 119.90369 * 359.97438 * 16 14 13 18 18 F 1.35098 * 119.98832 * 180.02562 * 17 16 14 19 19 H 0.97004 * 119.99614 * 359.97438 * 1 2 3 20 20 H 1.08002 * 119.95444 * 0.02562 * 12 11 9 21 21 H 1.08008 * 120.00777 * 180.29782 * 13 12 11 22 22 H 0.97001 * 119.99905 * 0.02562 * 15 14 13 23 23 H 0.97001 * 119.99774 * 179.97438 * 15 14 13 24 24 H 1.08006 * 120.04672 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 16 1.1234 -2.7200 0.0019 10 8 0.6150 -2.7968 -1.3228 11 6 2.4119 -3.9217 0.0014 12 6 2.8462 -4.4682 1.1950 13 6 3.8520 -5.4145 1.1980 14 6 4.4327 -5.8143 0.0007 15 7 5.4496 -6.7717 0.0017 16 6 4.0000 -5.2602 -1.1967 17 6 2.9922 -4.3126 -1.1938 18 9 2.5696 -3.7728 -2.3579 19 1 -0.4850 0.8401 0.0004 20 1 2.3949 -4.1581 2.1259 21 1 4.1868 -5.8440 2.1308 22 1 5.7509 -7.1584 0.8387 23 1 5.8541 -7.0504 -0.8348 24 1 4.4498 -5.5687 -2.1290 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088064223.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:25 Heat of formation + Delta-G solvation = -68.594489 kcal Electronic energy + Delta-G solvation = -13514.949192 eV Core-core repulsion = 10854.887309 eV Total energy + Delta-G solvation = -2660.061883 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.031 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.95695 -38.57066 -34.05671 -33.50591 -32.72083 -30.01745 -28.20120 -25.67102 -22.39780 -21.82538 -18.07569 -17.32160 -16.93469 -16.22478 -15.18996 -14.80721 -14.69509 -14.66884 -14.15524 -13.26868 -13.11710 -12.52112 -12.32596 -11.90792 -11.48168 -11.18330 -10.91502 -10.65093 -10.50797 -10.23840 -10.01890 -8.95983 -8.31544 -8.25644 -7.38770 -6.90500 -6.23172 -4.71639 1.80769 1.82315 3.16165 3.24906 3.30530 3.79946 3.91662 4.18912 4.30538 4.90833 5.11076 5.25861 5.44259 5.58797 5.82005 6.08578 6.23814 6.33594 6.57682 6.68521 6.96605 7.27792 7.57797 7.66593 7.81456 8.32526 9.18393 10.54997 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.038924 B = 0.008717 C = 0.008363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.171899 B = 3211.330280 C = 3347.111598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.120 3.880 3 Si 0.905 3.095 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.818 4.818 8 H 0.078 0.922 9 S 1.413 4.587 10 O -0.902 6.902 11 C -0.534 4.534 12 C 0.018 3.982 13 C -0.233 4.233 14 C 0.246 3.754 15 N -0.879 5.879 16 C -0.262 4.262 17 C 0.204 3.796 18 F -0.117 7.117 19 H 0.279 0.721 20 H 0.138 0.862 21 H 0.120 0.880 22 H 0.397 0.603 23 H 0.395 0.605 24 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.991 -9.872 6.269 13.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.092 4.092 3 Si 0.730 3.270 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.958 4.958 8 H 0.096 0.904 9 S 1.609 4.391 10 O -0.897 6.897 11 C -0.626 4.626 12 C -0.002 4.002 13 C -0.256 4.256 14 C 0.141 3.859 15 N -0.418 5.418 16 C -0.287 4.287 17 C 0.182 3.818 18 F -0.095 7.095 19 H 0.089 0.911 20 H 0.156 0.844 21 H 0.138 0.862 22 H 0.225 0.775 23 H 0.223 0.777 24 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.828 -9.948 6.186 13.085 hybrid contribution 2.475 1.038 -2.042 3.372 sum 8.303 -8.910 4.144 12.865 Atomic orbital electron populations 1.69857 1.06381 1.29157 1.44752 1.24722 0.94486 0.99739 0.90242 0.86378 0.80580 0.81897 0.78117 1.19248 1.20363 1.19910 1.27582 1.02097 1.05961 1.60192 0.90379 1.67928 0.83069 0.82397 1.05753 1.92856 1.70951 1.85399 1.40503 1.29277 1.20127 1.18916 0.94328 1.20473 0.92123 0.90972 0.96620 1.20645 1.03634 1.05617 0.95752 1.17423 0.87373 0.87817 0.93260 1.42422 1.41693 1.46572 1.11148 1.20447 1.04925 1.05771 0.97530 1.17295 0.91493 0.90898 0.82088 1.91610 1.88313 1.83780 1.45783 0.91053 0.84404 0.86190 0.77499 0.77725 0.86108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.71 13.19 55.43 0.73 -23.98 14 2 C 0.12 3.35 5.46 -17.82 -0.10 3.25 14 3 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 14 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 14 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 14 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 14 7 C -0.82 -23.02 9.34 30.60 0.29 -22.73 14 8 H 0.08 2.21 7.81 -52.48 -0.41 1.80 14 9 S 1.41 35.49 13.34 -107.50 -1.43 34.06 14 10 O -0.90 -28.26 15.43 -35.23 -0.54 -28.80 14 11 C -0.53 -11.74 5.59 -39.47 -0.22 -11.96 14 12 C 0.02 0.30 9.74 -39.62 -0.39 -0.08 14 13 C -0.23 -3.50 9.89 -39.37 -0.39 -3.89 14 14 C 0.25 3.80 6.75 -83.80 -0.57 3.23 14 15 N -0.88 -9.39 9.09 32.41 0.29 -9.09 14 16 C -0.26 -4.88 9.87 -39.32 -0.39 -5.26 14 17 C 0.20 4.69 7.17 -39.45 -0.28 4.41 14 18 F -0.12 -3.13 15.07 2.25 0.03 -3.10 14 19 H 0.28 7.31 8.31 -40.82 -0.34 6.97 14 20 H 0.14 1.82 8.06 -52.49 -0.42 1.40 14 21 H 0.12 1.38 8.06 -52.48 -0.42 0.96 14 22 H 0.40 3.20 8.84 -40.82 -0.36 2.84 14 23 H 0.40 3.55 8.84 -40.82 -0.36 3.19 14 24 H 0.12 1.99 8.06 -52.48 -0.42 1.57 14 LS Contribution 238.79 15.07 3.60 3.60 Total: -1.00 -37.14 238.79 -5.92 -43.06 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -1.54 Total: 1.00 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: -2.04 Total: -33.03 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 1.03 Total: -33.08 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.54 Total: -28.80 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.03 Total: -3.10 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 35.49 SS G_CDS: -1.43 Total: 34.06 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -37.14 -5.92 -43.06 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088064223.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.531 kcal (2) G-P(sol) polarization free energy of solvation -37.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds