Wall clock time and date at job start Mon Mar 30 2020 03:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00358 * 2 1 4 4 H 1.48498 * 109.47210 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46899 * 299.99992 * 3 2 1 6 6 H 1.48499 * 109.47328 * 59.99581 * 3 2 1 7 7 C 1.37875 * 119.99225 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99641 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00646 * 359.97438 * 7 2 1 10 10 O 1.42100 * 103.00024 * 73.12521 * 9 7 2 11 11 C 1.76195 * 103.00013 * 179.97438 * 9 7 2 12 12 C 1.38273 * 119.93518 * 95.00221 * 11 9 7 13 13 C 1.38096 * 120.09537 * 179.71954 * 12 11 9 14 14 C 1.38944 * 119.97897 * 0.27627 * 13 12 11 15 15 N 1.39671 * 120.06236 * 180.02562 * 14 13 12 16 16 C 1.38850 * 119.87397 * 0.02562 * 14 13 12 17 17 C 1.38341 * 119.90369 * 359.97438 * 16 14 13 18 18 F 1.35098 * 119.98832 * 180.02562 * 17 16 14 19 19 H 0.97004 * 119.99614 * 359.97438 * 1 2 3 20 20 H 1.08002 * 119.95444 * 0.02562 * 12 11 9 21 21 H 1.08008 * 120.00777 * 180.29782 * 13 12 11 22 22 H 0.97001 * 119.99905 * 0.02562 * 15 14 13 23 23 H 0.97001 * 119.99774 * 179.97438 * 15 14 13 24 24 H 1.08006 * 120.04672 * 179.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 16 1.1234 -2.7200 0.0019 10 8 0.6150 -2.7968 -1.3228 11 6 2.4119 -3.9217 0.0014 12 6 2.8462 -4.4682 1.1950 13 6 3.8520 -5.4145 1.1980 14 6 4.4327 -5.8143 0.0007 15 7 5.4496 -6.7717 0.0017 16 6 4.0000 -5.2602 -1.1967 17 6 2.9922 -4.3126 -1.1938 18 9 2.5696 -3.7728 -2.3579 19 1 -0.4850 0.8401 0.0004 20 1 2.3949 -4.1581 2.1259 21 1 4.1868 -5.8440 2.1308 22 1 5.7509 -7.1584 0.8387 23 1 5.8541 -7.0504 -0.8348 24 1 4.4498 -5.5687 -2.1290 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088064223.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:25 Heat of formation + Delta-G solvation = -98.488145 kcal Electronic energy + Delta-G solvation = -13516.245478 eV Core-core repulsion = 10854.887309 eV Total energy + Delta-G solvation = -2661.358169 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.031 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.78528 -39.90986 -35.70533 -35.27420 -34.84276 -31.42352 -29.53770 -27.81432 -23.79621 -23.26267 -20.09822 -18.82463 -18.16855 -17.86990 -17.26501 -16.52124 -16.31725 -16.04126 -15.89526 -15.13652 -14.66425 -14.06063 -13.80950 -13.64267 -13.30555 -13.09546 -12.82132 -12.48282 -12.26592 -12.06989 -11.45501 -11.03355 -10.39349 -9.71264 -9.00575 -8.68778 -8.24144 -6.89399 0.30304 0.43085 1.30128 1.33862 1.46667 1.99471 2.38067 2.72984 2.81469 2.84401 3.59606 3.66653 3.86635 4.12587 4.31469 4.62714 4.80968 5.01940 5.21418 5.31352 5.44844 5.51607 5.94065 6.14558 6.49414 6.99476 7.03796 8.47498 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.038924 B = 0.008717 C = 0.008363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.171899 B = 3211.330280 C = 3347.111598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.068 3.932 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.242 1.242 7 C -0.847 4.847 8 H 0.065 0.935 9 S 1.448 4.552 10 O -0.977 6.977 11 C -0.567 4.567 12 C 0.023 3.977 13 C -0.219 4.219 14 C 0.263 3.737 15 N -0.853 5.853 16 C -0.271 4.271 17 C 0.152 3.848 18 F -0.156 7.156 19 H 0.288 0.712 20 H 0.177 0.823 21 H 0.172 0.828 22 H 0.416 0.584 23 H 0.407 0.593 24 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.287 -11.125 8.657 16.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.166 1.166 7 C -0.987 4.987 8 H 0.084 0.916 9 S 1.648 4.352 10 O -0.972 6.972 11 C -0.664 4.664 12 C 0.003 3.997 13 C -0.242 4.242 14 C 0.154 3.846 15 N -0.392 5.392 16 C -0.296 4.296 17 C 0.131 3.869 18 F -0.134 7.134 19 H 0.097 0.903 20 H 0.194 0.806 21 H 0.189 0.811 22 H 0.248 0.752 23 H 0.237 0.763 24 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.127 -11.212 8.595 16.298 hybrid contribution 1.963 1.174 -2.701 3.540 sum 10.090 -10.038 5.894 15.405 Atomic orbital electron populations 1.69916 1.07612 1.30510 1.44971 1.25638 0.95443 1.03309 0.89674 0.85452 0.78890 0.77745 0.79104 1.19480 1.20744 1.16581 1.27911 1.01685 1.08222 1.60834 0.91623 1.66694 0.83540 0.81439 1.03508 1.92737 1.74342 1.86658 1.43487 1.28634 1.21355 1.20099 0.96341 1.20970 0.92188 0.90476 0.96049 1.21159 1.01709 1.03848 0.97479 1.17561 0.87349 0.87342 0.92305 1.42395 1.39452 1.44317 1.13059 1.20568 1.04072 1.05221 0.99716 1.17895 0.94151 0.93495 0.81316 1.91502 1.89199 1.84875 1.47837 0.90268 0.80591 0.81102 0.75205 0.76336 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.15 13.19 21.45 0.28 -51.87 14 2 C 0.07 3.88 5.46 84.65 0.46 4.35 14 3 Si 0.97 43.89 29.54 68.60 2.03 45.92 14 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 14 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 14 6 H -0.24 -9.73 7.11 99.48 0.71 -9.03 14 7 C -0.85 -49.19 9.34 67.73 0.63 -48.56 14 8 H 0.07 3.83 7.81 -2.91 -0.02 3.81 14 9 S 1.45 75.79 13.34 -56.49 -0.75 75.03 14 10 O -0.98 -64.92 15.43 -148.98 -2.30 -67.22 14 11 C -0.57 -25.19 5.59 22.34 0.12 -25.06 14 12 C 0.02 0.71 9.74 22.24 0.22 0.93 14 13 C -0.22 -5.48 9.89 22.41 0.22 -5.26 14 14 C 0.26 7.07 6.75 38.21 0.26 7.33 14 15 N -0.85 -13.72 9.09 -51.39 -0.47 -14.19 14 16 C -0.27 -9.78 9.87 22.44 0.22 -9.55 14 17 C 0.15 7.23 7.17 22.36 0.16 7.39 14 18 F -0.16 -8.91 15.07 44.97 0.68 -8.23 14 19 H 0.29 15.25 8.31 -92.71 -0.77 14.48 14 20 H 0.18 4.01 8.06 -2.91 -0.02 3.98 14 21 H 0.17 2.62 8.06 -2.91 -0.02 2.60 14 22 H 0.42 4.08 8.84 -92.71 -0.82 3.26 14 23 H 0.41 5.36 8.84 -92.71 -0.82 4.54 14 24 H 0.13 4.29 8.06 -2.91 -0.02 4.27 14 Total: -1.00 -86.18 238.79 1.38 -84.79 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -0.38 Total: 4.21 kcal Atomic # 6 Polarization: -70.74 SS G_CDS: 2.30 Total: -68.44 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: -0.18 Total: -66.06 kcal Atomic # 8 Polarization: -64.92 SS G_CDS: -2.30 Total: -67.22 kcal Atomic # 9 Polarization: -8.91 SS G_CDS: 0.68 Total: -8.23 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 75.79 SS G_CDS: -0.75 Total: 75.03 kcal Total: -86.18 1.38 -84.79 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088064223.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.696 kcal (2) G-P(sol) polarization free energy of solvation -86.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds