Wall clock time and date at job start Mon Mar 30 2020 03:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00270 * 2 1 4 4 H 1.48499 * 109.47188 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47000 * 300.00026 * 3 2 1 6 6 H 1.48496 * 109.47475 * 59.99963 * 3 2 1 7 7 C 1.37883 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00515 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99609 * 359.97438 * 7 2 1 10 10 O 1.42094 * 103.00151 * 286.87480 * 9 7 2 11 11 C 1.76201 * 102.99771 * 180.02562 * 9 7 2 12 12 C 1.38137 * 120.01287 * 95.02242 * 11 9 7 13 13 C 1.38221 * 120.09867 * 179.97438 * 12 11 9 14 14 C 1.38539 * 120.12439 * 0.02562 * 13 12 11 15 15 F 1.35100 * 119.98842 * 179.97438 * 14 13 12 16 16 C 1.38300 * 120.02425 * 359.97438 * 14 13 12 17 17 C 1.38889 * 119.90458 * 359.97438 * 16 14 13 18 18 N 1.39660 * 120.06470 * 180.27728 * 17 16 14 19 19 H 0.97003 * 119.99805 * 359.97438 * 1 2 3 20 20 H 1.08001 * 119.94616 * 0.02562 * 12 11 9 21 21 H 1.08003 * 119.94110 * 180.02562 * 13 12 11 22 22 H 1.08007 * 120.04978 * 180.02562 * 16 14 13 23 23 H 0.97009 * 120.00084 * 179.72015 * 18 17 16 24 24 H 0.96999 * 120.00520 * 359.72689 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8906 2.3964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 16 1.1235 -2.7200 -0.0005 10 8 0.6161 -2.7962 1.3245 11 6 2.4121 -3.9217 -0.0005 12 6 2.8460 -4.4696 1.1910 13 6 3.8564 -5.4128 1.1930 14 6 4.4377 -5.8115 0.0004 15 9 5.4254 -6.7333 0.0056 16 6 4.0072 -5.2664 -1.1955 17 6 2.9913 -4.3194 -1.1989 18 7 2.5500 -3.7709 -2.4052 19 1 -0.4850 0.8401 0.0004 20 1 2.3945 -4.1610 2.1223 21 1 4.1934 -5.8397 2.1261 22 1 4.4598 -5.5773 -2.1256 23 1 1.8376 -3.1125 -2.4068 24 1 2.9558 -4.0484 -3.2414 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088064407.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:14 Heat of formation + Delta-G solvation = -101.106712 kcal Electronic energy + Delta-G solvation = -13432.797219 eV Core-core repulsion = 10771.325500 eV Total energy + Delta-G solvation = -2661.471719 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.031 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.93783 -39.95563 -36.08114 -35.16401 -34.85842 -31.47524 -29.52977 -27.86349 -23.95828 -23.27281 -20.12548 -18.90515 -18.25296 -17.98244 -17.31105 -16.60871 -16.33387 -16.10303 -15.86861 -15.26930 -14.76057 -14.12166 -14.03596 -13.62751 -13.49030 -13.09011 -12.79791 -12.67447 -12.23869 -12.06512 -11.50407 -11.07950 -10.54678 -9.90035 -9.07285 -8.66250 -8.28620 -6.94568 0.07655 0.53669 1.30573 1.34709 1.47023 1.92372 2.33659 2.62919 2.76058 2.87287 3.45050 3.53419 3.82598 4.02172 4.14741 4.55363 4.78537 4.88689 5.02462 5.23442 5.42242 5.46580 5.88983 6.13374 6.53149 7.01145 7.09559 8.43594 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.038158 B = 0.008439 C = 0.008167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.611305 B = 3317.196866 C = 3427.710403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.073 3.927 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.245 1.245 6 H -0.282 1.282 7 C -0.845 4.845 8 H 0.069 0.931 9 S 1.444 4.556 10 O -0.979 6.979 11 C -0.555 4.555 12 C -0.009 4.009 13 C -0.240 4.240 14 C 0.154 3.846 15 F -0.139 7.139 16 C -0.246 4.246 17 C 0.314 3.686 18 N -0.845 5.845 19 H 0.289 0.711 20 H 0.103 0.897 21 H 0.139 0.861 22 H 0.168 0.832 23 H 0.411 0.589 24 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.381 -6.706 -9.349 12.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.169 1.169 6 H -0.208 1.208 7 C -0.985 4.985 8 H 0.088 0.912 9 S 1.645 4.355 10 O -0.974 6.974 11 C -0.654 4.654 12 C -0.029 4.029 13 C -0.262 4.262 14 C 0.134 3.866 15 F -0.117 7.117 16 C -0.270 4.270 17 C 0.202 3.798 18 N -0.385 5.385 19 H 0.099 0.901 20 H 0.121 0.879 21 H 0.157 0.843 22 H 0.185 0.815 23 H 0.242 0.758 24 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 4.257 -6.836 -9.356 12.345 hybrid contribution 1.911 1.150 2.046 3.027 sum 6.168 -5.686 -7.310 11.127 Atomic orbital electron populations 1.69899 1.07561 1.30690 1.44505 1.25582 0.95351 1.03138 0.89586 0.85468 0.78936 0.77873 0.79053 1.19518 1.16892 1.20758 1.27839 1.01853 1.07617 1.61185 0.91245 1.66402 0.83695 0.81566 1.03820 1.92707 1.74456 1.86832 1.43394 1.28098 1.21749 1.19679 0.95920 1.20601 0.92586 0.92397 0.97276 1.20971 1.02451 1.04781 0.98031 1.17444 0.86473 0.88163 0.94500 1.91466 1.59184 1.63584 1.97482 1.20712 1.03677 1.04275 0.98324 1.16862 0.88839 0.88205 0.85920 1.42594 1.43241 1.47866 1.04811 0.90118 0.87859 0.84325 0.81465 0.75784 0.74867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.68 13.19 21.45 0.28 -48.40 14 2 C 0.07 3.89 5.46 84.66 0.46 4.35 14 3 Si 0.96 41.29 29.54 68.60 2.03 43.32 14 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 14 5 H -0.25 -9.34 7.11 99.48 0.71 -8.63 14 6 H -0.28 -12.21 7.11 99.48 0.71 -11.51 14 7 C -0.85 -45.46 9.35 67.74 0.63 -44.83 14 8 H 0.07 3.77 7.81 -2.91 -0.02 3.75 14 9 S 1.44 69.97 11.90 -56.49 -0.67 69.30 14 10 O -0.98 -60.71 16.38 -148.98 -2.44 -63.15 14 11 C -0.56 -23.46 5.62 22.41 0.13 -23.33 14 12 C -0.01 -0.38 9.45 22.24 0.21 -0.17 14 13 C -0.24 -8.76 10.02 22.34 0.22 -8.54 14 14 C 0.15 5.02 7.30 22.36 0.16 5.18 14 15 F -0.14 -4.14 17.27 44.97 0.78 -3.37 14 16 C -0.25 -7.17 9.87 22.44 0.22 -6.95 14 17 C 0.31 10.26 6.74 38.21 0.26 10.52 14 18 N -0.85 -20.38 9.02 -51.39 -0.46 -20.84 14 19 H 0.29 14.39 8.31 -92.71 -0.77 13.62 14 20 H 0.10 5.05 7.22 -2.91 -0.02 5.03 14 21 H 0.14 4.44 8.06 -2.91 -0.02 4.41 14 22 H 0.17 3.53 8.06 -2.91 -0.02 3.50 14 23 H 0.41 10.07 7.34 -92.70 -0.68 9.39 14 24 H 0.42 6.51 8.84 -92.71 -0.82 5.69 14 Total: -1.00 -74.14 238.07 1.57 -72.57 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -0.24 Total: 14.33 kcal Atomic # 6 Polarization: -66.06 SS G_CDS: 2.30 Total: -63.76 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -0.18 Total: -69.25 kcal Atomic # 8 Polarization: -60.71 SS G_CDS: -2.44 Total: -63.15 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.78 Total: -3.37 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 69.97 SS G_CDS: -0.67 Total: 69.30 kcal Total: -74.14 1.57 -72.57 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088064407.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.535 kcal (2) G-P(sol) polarization free energy of solvation -74.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds