Wall clock time and date at job start Mon Mar 30 2020 03:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99763 * 2 1 4 4 H 1.48498 * 109.47106 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46996 * 299.99472 * 3 2 1 6 6 H 1.48494 * 109.47633 * 59.99630 * 3 2 1 7 7 C 1.37874 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99692 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00327 * 0.02562 * 7 2 1 10 10 O 1.42105 * 102.99930 * 73.12329 * 9 7 2 11 11 C 1.76205 * 102.99952 * 179.97438 * 9 7 2 12 12 C 1.38138 * 119.94792 * 89.99810 * 11 9 7 13 13 C 1.38908 * 119.97237 * 179.97438 * 12 11 9 14 14 N 1.39664 * 120.05918 * 179.97438 * 13 12 11 15 15 C 1.38891 * 119.87863 * 0.02562 * 13 12 11 16 16 C 1.38300 * 119.89924 * 359.97438 * 15 13 12 17 17 F 1.35103 * 119.98936 * 180.02562 * 16 15 13 18 18 C 1.38227 * 119.94901 * 269.72369 * 11 9 7 19 19 H 0.97004 * 120.00212 * 359.97438 * 1 2 3 20 20 H 1.08000 * 120.01517 * 0.02562 * 12 11 9 21 21 H 0.97002 * 120.00456 * 0.02562 * 14 13 12 22 22 H 0.97002 * 120.00454 * 180.02562 * 14 13 12 23 23 H 1.07993 * 120.04693 * 179.97438 * 15 13 12 24 24 H 1.07995 * 119.94137 * 0.02562 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 16 1.1235 -2.7200 0.0005 10 8 0.6161 -2.7961 -1.3246 11 6 2.4123 -3.9217 0.0005 12 6 2.9166 -4.3919 1.1975 13 6 3.9322 -5.3396 1.1981 14 7 4.4439 -5.8159 2.4072 15 6 4.4386 -5.8119 -0.0059 16 6 3.9298 -5.3375 -1.2013 17 9 4.4207 -5.7960 -2.3735 18 6 2.9130 -4.3965 -1.1971 19 1 -0.4851 0.8401 0.0004 20 1 2.5210 -4.0235 2.1324 21 1 4.0898 -5.4853 3.2476 22 1 5.1533 -6.4775 2.4067 23 1 5.2284 -6.5483 -0.0087 24 1 2.5140 -4.0300 -2.1314 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088065334.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:19 Heat of formation + Delta-G solvation = -73.604234 kcal Electronic energy + Delta-G solvation = -13280.200078 eV Core-core repulsion = 10619.920956 eV Total energy + Delta-G solvation = -2660.279122 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.031 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.42235 -38.57243 -34.14556 -33.60940 -32.83049 -30.06940 -28.17285 -25.79884 -22.53585 -21.82003 -18.30812 -17.42364 -16.93750 -15.75057 -15.35827 -15.12841 -15.05112 -14.67398 -14.63448 -13.55811 -13.28315 -12.62787 -12.48360 -11.74428 -11.40318 -11.23357 -11.09023 -10.77159 -10.55394 -10.30722 -10.08946 -9.07711 -8.54314 -8.35590 -7.26810 -7.05248 -6.36898 -4.84072 1.58910 1.92767 3.10569 3.19534 3.24980 3.65937 3.98385 4.14438 4.22812 4.77581 4.87583 5.34170 5.46014 5.56559 5.83478 5.98601 6.08413 6.28691 6.58975 6.68589 7.08833 7.24680 7.48191 7.72012 7.90169 8.22453 9.07648 10.44509 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.031724 B = 0.008396 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.404338 B = 3334.185886 C = 3519.264318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.120 3.880 3 Si 0.908 3.092 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.818 4.818 8 H 0.082 0.918 9 S 1.410 4.590 10 O -0.907 6.907 11 C -0.367 4.367 12 C -0.139 4.139 13 C 0.216 3.784 14 N -0.880 5.880 15 C -0.228 4.228 16 C 0.117 3.883 17 F -0.149 7.149 18 C -0.147 4.147 19 H 0.281 0.719 20 H 0.134 0.866 21 H 0.399 0.601 22 H 0.393 0.607 23 H 0.123 0.877 24 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.518 -8.110 8.159 12.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.092 4.092 3 Si 0.733 3.267 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.959 4.959 8 H 0.100 0.900 9 S 1.607 4.393 10 O -0.902 6.902 11 C -0.458 4.458 12 C -0.162 4.162 13 C 0.112 3.888 14 N -0.420 5.420 15 C -0.252 4.252 16 C 0.096 3.904 17 F -0.128 7.128 18 C -0.168 4.168 19 H 0.091 0.909 20 H 0.152 0.848 21 H 0.228 0.772 22 H 0.221 0.779 23 H 0.141 0.859 24 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.394 -8.239 8.038 12.320 hybrid contribution 2.453 0.963 -1.681 3.125 sum 6.847 -7.276 6.357 11.842 Atomic orbital electron populations 1.69849 1.06427 1.29418 1.44200 1.24739 0.94527 0.99898 0.90079 0.86322 0.80572 0.81573 0.78214 1.19125 1.20265 1.19849 1.27469 1.02257 1.05388 1.60767 0.89975 1.68048 0.83202 0.82775 1.05298 1.92810 1.70976 1.85564 1.40815 1.29183 1.12252 1.10368 0.93954 1.20360 0.98502 0.99246 0.98115 1.17580 0.92727 0.92876 0.85651 1.42338 1.44640 1.50042 1.04984 1.20293 1.06600 1.07672 0.90597 1.17622 0.95794 0.96608 0.80361 1.91432 1.87018 1.87860 1.46511 1.20975 0.97104 0.98484 1.00241 0.90865 0.84803 0.77226 0.77908 0.85937 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.83 13.19 55.43 0.73 -23.10 14 2 C 0.12 3.24 5.46 -17.82 -0.10 3.14 14 3 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 14 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 14 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 14 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 14 7 C -0.82 -22.12 9.34 30.60 0.29 -21.83 14 8 H 0.08 2.22 7.81 -52.48 -0.41 1.81 14 9 S 1.41 33.87 13.39 -107.50 -1.44 32.43 14 10 O -0.91 -27.24 16.45 -35.23 -0.58 -27.82 14 11 C -0.37 -7.82 5.59 -39.62 -0.22 -8.05 14 12 C -0.14 -2.37 9.60 -39.37 -0.38 -2.75 14 13 C 0.22 3.32 6.75 -83.80 -0.57 2.75 14 14 N -0.88 -9.26 9.09 32.41 0.29 -8.97 14 15 C -0.23 -3.79 9.87 -39.32 -0.39 -4.18 14 16 C 0.12 2.31 7.30 -39.45 -0.29 2.02 14 17 F -0.15 -2.90 17.27 2.25 0.04 -2.87 14 18 C -0.15 -3.30 9.43 -39.47 -0.37 -3.67 14 19 H 0.28 7.11 8.31 -40.82 -0.34 6.77 14 20 H 0.13 1.83 8.06 -52.49 -0.42 1.40 14 21 H 0.40 3.33 8.84 -40.82 -0.36 2.97 14 22 H 0.39 3.29 8.84 -40.82 -0.36 2.92 14 23 H 0.12 1.70 8.06 -52.49 -0.42 1.27 14 24 H 0.13 3.31 7.29 -52.49 -0.38 2.93 14 LS Contribution 240.80 15.07 3.63 3.63 Total: -1.00 -34.73 240.80 -5.87 -40.59 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -1.49 Total: 3.06 kcal Atomic # 6 Polarization: -30.53 SS G_CDS: -2.03 Total: -32.56 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 1.03 Total: -32.07 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.58 Total: -27.82 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 33.87 SS G_CDS: -1.44 Total: 32.43 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -34.73 -5.87 -40.59 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088065334.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.010 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds