Wall clock time and date at job start Mon Mar 30 2020 03:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99763 * 2 1 4 4 H 1.48498 * 109.47106 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46996 * 299.99472 * 3 2 1 6 6 H 1.48494 * 109.47633 * 59.99630 * 3 2 1 7 7 C 1.37874 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99692 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00327 * 0.02562 * 7 2 1 10 10 O 1.42105 * 102.99930 * 73.12329 * 9 7 2 11 11 C 1.76205 * 102.99952 * 179.97438 * 9 7 2 12 12 C 1.38138 * 119.94792 * 89.99810 * 11 9 7 13 13 C 1.38908 * 119.97237 * 179.97438 * 12 11 9 14 14 N 1.39664 * 120.05918 * 179.97438 * 13 12 11 15 15 C 1.38891 * 119.87863 * 0.02562 * 13 12 11 16 16 C 1.38300 * 119.89924 * 359.97438 * 15 13 12 17 17 F 1.35103 * 119.98936 * 180.02562 * 16 15 13 18 18 C 1.38227 * 119.94901 * 269.72369 * 11 9 7 19 19 H 0.97004 * 120.00212 * 359.97438 * 1 2 3 20 20 H 1.08000 * 120.01517 * 0.02562 * 12 11 9 21 21 H 0.97002 * 120.00456 * 0.02562 * 14 13 12 22 22 H 0.97002 * 120.00454 * 180.02562 * 14 13 12 23 23 H 1.07993 * 120.04693 * 179.97438 * 15 13 12 24 24 H 1.07995 * 119.94137 * 0.02562 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 16 1.1235 -2.7200 0.0005 10 8 0.6161 -2.7961 -1.3246 11 6 2.4123 -3.9217 0.0005 12 6 2.9166 -4.3919 1.1975 13 6 3.9322 -5.3396 1.1981 14 7 4.4439 -5.8159 2.4072 15 6 4.4386 -5.8119 -0.0059 16 6 3.9298 -5.3375 -1.2013 17 9 4.4207 -5.7960 -2.3735 18 6 2.9130 -4.3965 -1.1971 19 1 -0.4851 0.8401 0.0004 20 1 2.5210 -4.0235 2.1324 21 1 4.0898 -5.4853 3.2476 22 1 5.1533 -6.4775 2.4067 23 1 5.2284 -6.5483 -0.0087 24 1 2.5140 -4.0300 -2.1314 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088065334.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:19 Heat of formation + Delta-G solvation = -100.875058 kcal Electronic energy + Delta-G solvation = -13281.382629 eV Core-core repulsion = 10619.920956 eV Total energy + Delta-G solvation = -2661.461674 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.031 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.94966 -39.96805 -35.95424 -35.21873 -34.87408 -31.53366 -29.51593 -27.87976 -24.03391 -23.24340 -20.19374 -19.02364 -18.17571 -17.41535 -17.14537 -16.80944 -16.64976 -16.06087 -15.98008 -15.29716 -15.18183 -14.17018 -13.91256 -13.60143 -13.11200 -12.98979 -12.78712 -12.69303 -12.39240 -12.10622 -11.52458 -11.07797 -10.55660 -9.87875 -9.07211 -8.50762 -8.37893 -6.95229 0.09904 0.41851 1.31461 1.35487 1.48193 1.89281 2.31571 2.65043 2.76759 2.90550 3.39652 3.52273 4.05022 4.06235 4.13527 4.42773 4.63770 4.88978 5.14555 5.23586 5.42832 5.52045 5.84342 6.11991 6.57326 7.00151 7.10278 8.43794 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.031724 B = 0.008396 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.404338 B = 3334.185886 C = 3519.264318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.969 3.031 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.244 1.244 7 C -0.847 4.847 8 H 0.073 0.927 9 S 1.449 4.551 10 O -0.979 6.979 11 C -0.384 4.384 12 C -0.134 4.134 13 C 0.237 3.763 14 N -0.851 5.851 15 C -0.218 4.218 16 C 0.108 3.892 17 F -0.152 7.152 18 C -0.191 4.191 19 H 0.289 0.711 20 H 0.172 0.828 21 H 0.416 0.584 22 H 0.411 0.589 23 H 0.160 0.840 24 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.470 -8.810 10.933 15.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.167 1.167 7 C -0.987 4.987 8 H 0.091 0.909 9 S 1.650 4.350 10 O -0.974 6.974 11 C -0.479 4.479 12 C -0.158 4.158 13 C 0.129 3.871 14 N -0.392 5.392 15 C -0.242 4.242 16 C 0.087 3.913 17 F -0.131 7.131 18 C -0.213 4.213 19 H 0.099 0.901 20 H 0.190 0.810 21 H 0.247 0.753 22 H 0.241 0.759 23 H 0.177 0.823 24 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.332 -8.937 10.870 15.431 hybrid contribution 1.974 1.007 -2.435 3.293 sum 8.307 -7.930 8.435 14.249 Atomic orbital electron populations 1.69903 1.07647 1.30779 1.44392 1.25635 0.95432 1.03357 0.89482 0.85408 0.78945 0.77513 0.79098 1.19306 1.20704 1.16729 1.27779 1.02042 1.07443 1.61409 0.90895 1.66931 0.83335 0.81745 1.02986 1.92697 1.74163 1.86753 1.43777 1.28498 1.13012 1.10874 0.95492 1.20717 0.98323 0.98942 0.97784 1.17553 0.91264 0.91261 0.87052 1.42292 1.43983 1.49131 1.03830 1.20628 1.06651 1.07456 0.89431 1.17689 0.95496 0.96541 0.81556 1.91416 1.86904 1.87794 1.47016 1.20737 0.99931 1.01591 0.99037 0.90064 0.81027 0.75310 0.75859 0.82256 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.91 13.19 21.45 0.28 -49.63 14 2 C 0.07 3.85 5.46 84.65 0.46 4.31 14 3 Si 0.97 42.08 29.54 68.60 2.03 44.11 14 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 14 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 14 6 H -0.24 -9.39 7.11 99.48 0.71 -8.68 14 7 C -0.85 -46.84 9.34 67.73 0.63 -46.21 14 8 H 0.07 4.03 7.81 -2.91 -0.02 4.01 14 9 S 1.45 72.21 13.39 -56.49 -0.76 71.46 14 10 O -0.98 -62.41 16.45 -148.98 -2.45 -64.86 14 11 C -0.38 -16.58 5.59 22.24 0.12 -16.45 14 12 C -0.13 -4.24 9.60 22.41 0.22 -4.02 14 13 C 0.24 6.28 6.75 38.21 0.26 6.53 14 14 N -0.85 -12.92 9.09 -51.39 -0.47 -13.39 14 15 C -0.22 -6.50 9.87 22.44 0.22 -6.27 14 16 C 0.11 4.24 7.30 22.36 0.16 4.40 14 17 F -0.15 -5.95 17.27 44.97 0.78 -5.18 14 18 C -0.19 -8.97 9.43 22.34 0.21 -8.76 14 19 H 0.29 14.72 8.31 -92.71 -0.77 13.95 14 20 H 0.17 3.99 8.06 -2.91 -0.02 3.97 14 21 H 0.42 4.37 8.84 -92.71 -0.82 3.55 14 22 H 0.41 4.23 8.84 -92.71 -0.82 3.41 14 23 H 0.16 3.57 8.06 -2.91 -0.02 3.55 14 24 H 0.09 4.85 7.29 -2.91 -0.02 4.83 14 Total: -1.00 -79.24 240.80 1.32 -77.92 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -0.38 Total: 6.04 kcal Atomic # 6 Polarization: -68.76 SS G_CDS: 2.29 Total: -66.48 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: -0.18 Total: -63.01 kcal Atomic # 8 Polarization: -62.41 SS G_CDS: -2.45 Total: -64.86 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.78 Total: -5.18 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 72.21 SS G_CDS: -0.76 Total: 71.46 kcal Total: -79.24 1.32 -77.92 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088065334.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.954 kcal (2) G-P(sol) polarization free energy of solvation -79.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds