Wall clock time and date at job start Mon Mar 30 2020 03:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42099 * 102.99728 * 286.58919 * 9 7 2 11 11 C 1.76206 * 102.99782 * 179.71935 * 9 7 2 12 12 C 1.38146 * 120.02100 * 94.99651 * 11 9 7 13 13 C 1.38441 * 120.04700 * 179.97438 * 12 11 9 14 14 F 1.35100 * 119.95064 * 179.97438 * 13 12 11 15 15 C 1.38486 * 120.09869 * 0.02562 * 13 12 11 16 16 C 1.38101 * 120.04986 * 359.96832 * 15 13 12 17 17 C 1.38854 * 120.02506 * 274.71888 * 11 9 7 18 18 N 1.39817 * 120.04973 * 0.02812 * 17 11 9 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.07995 * 119.98074 * 359.95899 * 12 11 9 21 21 H 1.08001 * 119.97835 * 179.97438 * 15 13 12 22 22 H 1.08006 * 120.02489 * 180.02562 * 16 15 13 23 23 H 0.97007 * 119.99930 * 359.97438 * 18 17 11 24 24 H 0.96992 * 120.00227 * 179.97438 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.6155 -2.8018 1.3182 11 6 2.4120 -3.9218 -0.0117 12 6 2.8464 -4.4747 1.1775 13 6 3.8585 -5.4193 1.1739 14 9 4.2821 -5.9584 2.3380 15 6 4.4380 -5.8117 -0.0211 16 6 4.0068 -5.2616 -1.2123 17 6 2.9877 -4.3179 -1.2116 18 7 2.5461 -3.7634 -2.4167 19 1 -0.4850 0.8401 -0.0004 20 1 2.3963 -4.1697 2.1106 21 1 5.2277 -6.5484 -0.0217 22 1 4.4588 -5.5683 -2.1440 23 1 1.8367 -3.1017 -2.4151 24 1 2.9489 -4.0404 -3.2544 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088065709.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:21 Heat of formation + Delta-G solvation = -101.783872 kcal Electronic energy + Delta-G solvation = -13477.537988 eV Core-core repulsion = 10816.036905 eV Total energy + Delta-G solvation = -2661.501083 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.031 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.71901 -39.94965 -36.07777 -35.05311 -34.85051 -31.98695 -28.98772 -27.89457 -24.26116 -23.04636 -20.18386 -18.88864 -18.19680 -17.82696 -17.38891 -16.75831 -16.48572 -15.98510 -15.38849 -15.23576 -14.78495 -14.09535 -13.89900 -13.72975 -13.55492 -13.09083 -12.96002 -12.68394 -12.26564 -12.06547 -11.30181 -11.07077 -10.58063 -10.14036 -9.11540 -8.54672 -8.24406 -6.97551 0.14132 0.46306 1.30025 1.34826 1.45091 1.89313 2.31453 2.65560 2.74940 3.04799 3.48582 3.50480 3.81811 4.07311 4.12914 4.54033 4.73751 4.99525 5.11984 5.28018 5.34663 5.40873 5.92688 6.10269 6.58362 6.98465 7.15706 8.41650 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.033069 B = 0.009117 C = 0.008693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.523724 B = 3070.297364 C = 3220.362184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.073 3.927 3 Si 0.967 3.033 4 H -0.238 1.238 5 H -0.275 1.275 6 H -0.282 1.282 7 C -0.847 4.847 8 H 0.070 0.930 9 S 1.444 4.556 10 O -0.982 6.982 11 C -0.524 4.524 12 C -0.075 4.075 13 C -0.014 4.014 14 F -0.162 7.162 15 C -0.075 4.075 16 C -0.176 4.176 17 C 0.280 3.720 18 N -0.849 5.849 19 H 0.289 0.711 20 H 0.090 0.910 21 H 0.168 0.832 22 H 0.181 0.819 23 H 0.407 0.593 24 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.392 -7.237 -11.311 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.789 3.211 4 H -0.161 1.161 5 H -0.200 1.200 6 H -0.208 1.208 7 C -0.986 4.986 8 H 0.088 0.912 9 S 1.646 4.354 10 O -0.978 6.978 11 C -0.623 4.623 12 C -0.095 4.095 13 C -0.036 4.036 14 F -0.141 7.141 15 C -0.095 4.095 16 C -0.199 4.199 17 C 0.169 3.831 18 N -0.389 5.389 19 H 0.099 0.901 20 H 0.109 0.891 21 H 0.186 0.814 22 H 0.198 0.802 23 H 0.238 0.762 24 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 5.239 -7.353 -11.271 14.441 hybrid contribution 1.615 1.312 2.492 3.247 sum 6.855 -6.041 -8.779 12.671 Atomic orbital electron populations 1.69898 1.07609 1.30815 1.44280 1.25612 0.95385 1.03229 0.89490 0.85468 0.78125 0.77209 0.80334 1.16104 1.19991 1.20755 1.27772 1.01850 1.07502 1.61509 0.91193 1.66360 0.83668 0.81685 1.03736 1.92714 1.74604 1.86858 1.43587 1.27898 1.20782 1.18437 0.95229 1.20715 0.95132 0.95421 0.98270 1.17808 1.01393 1.01710 0.82653 1.91377 1.89593 1.85302 1.47799 1.21255 0.99184 0.99360 0.89685 1.20977 0.99512 0.99991 0.99421 1.17365 0.90386 0.89844 0.85493 1.42613 1.43736 1.47658 1.04875 0.90063 0.89138 0.81429 0.80219 0.76197 0.74737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.21 13.19 21.45 0.28 -48.93 14 2 C 0.07 3.91 5.46 84.66 0.46 4.37 14 3 Si 0.97 41.61 29.54 68.60 2.03 43.64 14 4 H -0.24 -8.99 7.11 99.48 0.71 -8.29 14 5 H -0.27 -11.54 7.11 99.48 0.71 -10.84 14 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 14 7 C -0.85 -46.29 9.34 67.74 0.63 -45.66 14 8 H 0.07 3.85 7.81 -2.91 -0.02 3.83 14 9 S 1.44 71.81 11.90 -56.49 -0.67 71.14 14 10 O -0.98 -63.11 16.39 -148.98 -2.44 -65.55 14 11 C -0.52 -22.70 5.62 22.40 0.13 -22.58 14 12 C -0.07 -3.51 9.43 22.30 0.21 -3.30 14 13 C -0.01 -0.53 7.30 22.38 0.16 -0.37 14 14 F -0.16 -6.39 17.26 44.97 0.78 -5.61 14 15 C -0.08 -2.17 10.02 22.30 0.22 -1.95 14 16 C -0.18 -4.46 9.89 22.40 0.22 -4.24 14 17 C 0.28 8.86 6.74 38.17 0.26 9.12 14 18 N -0.85 -19.60 9.03 -51.32 -0.46 -20.06 14 19 H 0.29 14.60 8.31 -92.70 -0.77 13.83 14 20 H 0.09 4.93 7.22 -2.91 -0.02 4.91 14 21 H 0.17 3.43 8.06 -2.91 -0.02 3.41 14 22 H 0.18 2.67 8.06 -2.91 -0.02 2.65 14 23 H 0.41 9.89 7.34 -92.70 -0.68 9.21 14 24 H 0.42 5.82 8.84 -92.71 -0.82 5.00 14 Total: -1.00 -79.77 238.09 1.57 -78.21 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -0.24 Total: 11.77 kcal Atomic # 6 Polarization: -66.90 SS G_CDS: 2.30 Total: -64.60 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -0.18 Total: -68.99 kcal Atomic # 8 Polarization: -63.11 SS G_CDS: -2.44 Total: -65.55 kcal Atomic # 9 Polarization: -6.39 SS G_CDS: 0.78 Total: -5.61 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 16 Polarization: 71.81 SS G_CDS: -0.67 Total: 71.14 kcal Total: -79.77 1.57 -78.21 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088065709.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.575 kcal (2) G-P(sol) polarization free energy of solvation -79.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds