Wall clock time and date at job start Mon Mar 30 2020 03:16:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86809 * 119.99877 * 2 1
4 4 H 1.48496 * 109.47371 * 270.00582 * 3 2 1
5 5 H 1.48503 * 109.46610 * 30.00897 * 3 2 1
6 6 H 1.48495 * 109.47034 * 150.00418 * 3 2 1
7 7 C 1.37878 * 120.00217 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99706 * 359.97438 * 7 2 1
9 9 S 1.76201 * 119.99939 * 179.97438 * 7 2 1
10 10 O 1.42093 * 103.00325 * 73.12799 * 9 7 2
11 11 C 1.76203 * 102.99939 * 180.02562 * 9 7 2
12 12 C 1.38143 * 120.02193 * 265.23973 * 11 9 7
13 13 C 1.38446 * 120.04470 * 179.97438 * 12 11 9
14 14 F 1.35095 * 119.94761 * 179.97438 * 13 12 11
15 15 C 1.38483 * 120.10139 * 0.02562 * 13 12 11
16 16 C 1.38097 * 120.05008 * 359.97438 * 15 13 12
17 17 C 1.38858 * 120.02341 * 85.21515 * 11 9 7
18 18 N 1.39823 * 120.05063 * 0.04556 * 17 11 9
19 19 H 0.97000 * 120.00015 * 359.97438 * 1 2 3
20 20 H 1.07997 * 119.97673 * 0.25851 * 12 11 9
21 21 H 1.07997 * 119.97428 * 180.02562 * 15 13 12
22 22 H 1.08001 * 120.03128 * 180.02562 * 16 15 13
23 23 H 0.96998 * 119.99646 * 174.36316 * 18 17 11
24 24 H 0.96995 * 119.99752 * 354.36346 * 18 17 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4966 2.0466 -1.4000
5 1 1.4466 2.6526 0.7003
6 1 3.5467 1.4403 0.6999
7 6 2.0046 -1.1940 -0.0005
8 1 1.4646 -2.1293 -0.0005
9 16 3.7666 -1.1939 -0.0012
10 8 4.0868 -0.7924 1.3237
11 6 4.1630 -2.9108 -0.0025
12 6 4.4157 -3.5627 1.1889
13 6 4.7267 -4.9118 1.1885
14 9 4.9740 -5.5473 2.3547
15 6 4.7858 -5.6105 -0.0057
16 6 4.5339 -4.9629 -1.1991
17 6 4.2212 -3.6095 -1.2011
18 7 3.9662 -2.9516 -2.4082
19 1 -0.4850 0.8400 0.0004
20 1 4.3661 -3.0207 2.1217
21 1 5.0282 -6.6630 -0.0036
22 1 4.5796 -5.5082 -2.1302
23 1 4.0865 -3.4185 -3.2498
24 1 3.6690 -2.0283 -2.4039
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000088065710.mol2 24
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:16:22
Heat of formation + Delta-G solvation = -93.352571 kcal
Electronic energy + Delta-G solvation = -13518.431336 eV
Core-core repulsion = 10857.295862 eV
Total energy + Delta-G solvation = -2661.135474 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 229.031 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-49.74746 -40.02116 -36.28376 -35.09766 -34.87649 -32.07413 -29.05172 -28.12330
-24.36482 -23.12906 -20.23608 -18.92273 -18.26267 -17.91231 -17.66468 -16.83013
-16.50662 -16.04405 -15.57009 -14.89665 -14.82514 -14.65897 -14.05472 -13.80128
-13.71094 -13.25394 -12.99659 -12.80156 -12.13521 -11.95835 -11.34173 -11.04343
-10.73146 -10.21599 -9.19542 -8.67754 -8.41794 -7.02943 0.06602 0.41425
1.14937 1.22609 1.42941 1.79841 2.11575 2.53198 2.65799 2.98554
3.06724 3.43624 3.69654 3.94918 4.05948 4.47392 4.67425 4.93792
5.07509 5.23165 5.25879 5.59416 5.87548 6.19677 6.52249 6.81805
7.10762 8.48392
Molecular weight = 229.03amu
Principal moments of inertia in cm(-1)
A = 0.037519 B = 0.009585 C = 0.008805
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 746.110231 B = 2920.402065 C = 3179.217991
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.079 3.921
3 Si 0.861 3.139
4 H -0.185 1.185
5 H -0.259 1.259
6 H -0.239 1.239
7 C -0.842 4.842
8 H 0.048 0.952
9 S 1.416 4.584
10 O -0.974 6.974
11 C -0.513 4.513
12 C -0.071 4.071
13 C -0.012 4.012
14 F -0.160 7.160
15 C -0.072 4.072
16 C -0.175 4.175
17 C 0.281 3.719
18 N -0.848 5.848
19 H 0.281 0.719
20 H 0.096 0.904
21 H 0.170 0.830
22 H 0.182 0.818
23 H 0.422 0.578
24 H 0.408 0.592
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.190 -5.682 -11.331 16.264
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.528 5.528
2 C -0.131 4.131
3 Si 0.677 3.323
4 H -0.106 1.106
5 H -0.183 1.183
6 H -0.163 1.163
7 C -0.981 4.981
8 H 0.067 0.933
9 S 1.619 4.381
10 O -0.969 6.969
11 C -0.614 4.614
12 C -0.092 4.092
13 C -0.034 4.034
14 F -0.139 7.139
15 C -0.091 4.091
16 C -0.198 4.198
17 C 0.170 3.830
18 N -0.389 5.389
19 H 0.091 0.909
20 H 0.114 0.886
21 H 0.188 0.812
22 H 0.200 0.800
23 H 0.255 0.745
24 H 0.238 0.762
Dipole moment (debyes) X Y Z Total
from point charges 10.664 -4.843 -11.296 16.272
hybrid contribution -1.561 -0.511 2.560 3.042
sum 9.103 -5.354 -8.735 13.706
Atomic orbital electron populations
1.70112 1.08550 1.29823 1.44293 1.25629 0.95338 1.02808 0.89348
0.86906 0.81423 0.79618 0.84337 1.10637 1.18306 1.16280 1.27900
1.11054 0.97839 1.61349 0.93304 1.66205 0.86373 0.81291 1.04275
1.92809 1.83969 1.76913 1.43227 1.27257 1.17692 1.20891 0.95605
1.20726 0.96646 0.93534 0.98273 1.17773 1.12055 0.90920 0.82634
1.91386 1.93017 1.81975 1.47510 1.21306 0.96754 1.01381 0.89664
1.21003 1.07180 0.92047 0.99551 1.17399 0.88493 0.91636 0.85506
1.42624 1.74775 1.16997 1.04495 0.90878 0.88553 0.81220 0.80037
0.74524 0.76171
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -53.07 13.96 21.45 0.30 -52.77 14
2 C 0.08 4.43 5.47 84.65 0.46 4.89 14
3 Si 0.86 37.98 27.42 68.60 1.88 39.86 14
4 H -0.19 -6.31 7.11 99.48 0.71 -5.60 14
5 H -0.26 -11.35 7.11 99.48 0.71 -10.64 14
6 H -0.24 -11.17 5.95 99.48 0.59 -10.58 14
7 C -0.84 -47.76 9.88 67.73 0.67 -47.09 14
8 H 0.05 3.11 8.06 -2.91 -0.02 3.09 14
9 S 1.42 65.16 10.38 -56.49 -0.59 64.58 14
10 O -0.97 -56.95 14.95 -148.98 -2.23 -59.18 14
11 C -0.51 -21.53 5.62 22.40 0.13 -21.40 14
12 C -0.07 -3.25 9.43 22.30 0.21 -3.04 14
13 C -0.01 -0.45 7.30 22.38 0.16 -0.28 14
14 F -0.16 -6.18 17.26 44.97 0.78 -5.41 14
15 C -0.07 -2.01 10.02 22.29 0.22 -1.79 14
16 C -0.17 -4.33 9.90 22.40 0.22 -4.10 14
17 C 0.28 8.66 6.74 38.17 0.26 8.92 14
18 N -0.85 -18.81 9.02 -51.31 -0.46 -19.27 14
19 H 0.28 15.16 8.31 -92.71 -0.77 14.39 14
20 H 0.10 5.05 7.23 -2.91 -0.02 5.03 14
21 H 0.17 3.35 8.06 -2.91 -0.02 3.33 14
22 H 0.18 2.60 8.06 -2.91 -0.02 2.57 14
23 H 0.42 5.47 8.85 -92.71 -0.82 4.64 14
24 H 0.41 9.28 7.36 -92.71 -0.68 8.60 14
Total: -1.00 -82.91 233.43 1.66 -81.25
By element:
Atomic # 1 Polarization: 15.19 SS G_CDS: -0.36 Total: 14.83 kcal
Atomic # 6 Polarization: -66.22 SS G_CDS: 2.33 Total: -63.89 kcal
Atomic # 7 Polarization: -71.88 SS G_CDS: -0.16 Total: -72.04 kcal
Atomic # 8 Polarization: -56.95 SS G_CDS: -2.23 Total: -59.18 kcal
Atomic # 9 Polarization: -6.18 SS G_CDS: 0.78 Total: -5.41 kcal
Atomic # 14 Polarization: 37.98 SS G_CDS: 1.88 Total: 39.86 kcal
Atomic # 16 Polarization: 65.16 SS G_CDS: -0.59 Total: 64.58 kcal
Total: -82.91 1.66 -81.25 kcal
The number of atoms in the molecule is 24
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000088065710.mol2 24
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.103 kcal
(2) G-P(sol) polarization free energy of solvation -82.905 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.008 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.250 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.353 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds