Wall clock time and date at job start Mon Mar 30 2020 03:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86809 * 119.99877 * 2 1 4 4 H 1.48496 * 109.47371 * 270.00582 * 3 2 1 5 5 H 1.48503 * 109.46610 * 30.00897 * 3 2 1 6 6 H 1.48495 * 109.47034 * 150.00418 * 3 2 1 7 7 C 1.37878 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99706 * 359.97438 * 7 2 1 9 9 S 1.76201 * 119.99939 * 179.97438 * 7 2 1 10 10 O 1.42093 * 103.00325 * 73.12799 * 9 7 2 11 11 C 1.76203 * 102.99939 * 180.02562 * 9 7 2 12 12 C 1.38143 * 120.02193 * 265.23973 * 11 9 7 13 13 C 1.38446 * 120.04470 * 179.97438 * 12 11 9 14 14 F 1.35095 * 119.94761 * 179.97438 * 13 12 11 15 15 C 1.38483 * 120.10139 * 0.02562 * 13 12 11 16 16 C 1.38097 * 120.05008 * 359.97438 * 15 13 12 17 17 C 1.38858 * 120.02341 * 85.21515 * 11 9 7 18 18 N 1.39823 * 120.05063 * 0.04556 * 17 11 9 19 19 H 0.97000 * 120.00015 * 359.97438 * 1 2 3 20 20 H 1.07997 * 119.97673 * 0.25851 * 12 11 9 21 21 H 1.07997 * 119.97428 * 180.02562 * 15 13 12 22 22 H 1.08001 * 120.03128 * 180.02562 * 16 15 13 23 23 H 0.96998 * 119.99646 * 174.36316 * 18 17 11 24 24 H 0.96995 * 119.99752 * 354.36346 * 18 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7003 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7666 -1.1939 -0.0012 10 8 4.0868 -0.7924 1.3237 11 6 4.1630 -2.9108 -0.0025 12 6 4.4157 -3.5627 1.1889 13 6 4.7267 -4.9118 1.1885 14 9 4.9740 -5.5473 2.3547 15 6 4.7858 -5.6105 -0.0057 16 6 4.5339 -4.9629 -1.1991 17 6 4.2212 -3.6095 -1.2011 18 7 3.9662 -2.9516 -2.4082 19 1 -0.4850 0.8400 0.0004 20 1 4.3661 -3.0207 2.1217 21 1 5.0282 -6.6630 -0.0036 22 1 4.5796 -5.5082 -2.1302 23 1 4.0865 -3.4185 -3.2498 24 1 3.6690 -2.0283 -2.4039 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088065710.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:22 Heat of formation + Delta-G solvation = -93.352571 kcal Electronic energy + Delta-G solvation = -13518.431336 eV Core-core repulsion = 10857.295862 eV Total energy + Delta-G solvation = -2661.135474 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.031 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.74746 -40.02116 -36.28376 -35.09766 -34.87649 -32.07413 -29.05172 -28.12330 -24.36482 -23.12906 -20.23608 -18.92273 -18.26267 -17.91231 -17.66468 -16.83013 -16.50662 -16.04405 -15.57009 -14.89665 -14.82514 -14.65897 -14.05472 -13.80128 -13.71094 -13.25394 -12.99659 -12.80156 -12.13521 -11.95835 -11.34173 -11.04343 -10.73146 -10.21599 -9.19542 -8.67754 -8.41794 -7.02943 0.06602 0.41425 1.14937 1.22609 1.42941 1.79841 2.11575 2.53198 2.65799 2.98554 3.06724 3.43624 3.69654 3.94918 4.05948 4.47392 4.67425 4.93792 5.07509 5.23165 5.25879 5.59416 5.87548 6.19677 6.52249 6.81805 7.10762 8.48392 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.037519 B = 0.009585 C = 0.008805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.110231 B = 2920.402065 C = 3179.217991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.079 3.921 3 Si 0.861 3.139 4 H -0.185 1.185 5 H -0.259 1.259 6 H -0.239 1.239 7 C -0.842 4.842 8 H 0.048 0.952 9 S 1.416 4.584 10 O -0.974 6.974 11 C -0.513 4.513 12 C -0.071 4.071 13 C -0.012 4.012 14 F -0.160 7.160 15 C -0.072 4.072 16 C -0.175 4.175 17 C 0.281 3.719 18 N -0.848 5.848 19 H 0.281 0.719 20 H 0.096 0.904 21 H 0.170 0.830 22 H 0.182 0.818 23 H 0.422 0.578 24 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.190 -5.682 -11.331 16.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.131 4.131 3 Si 0.677 3.323 4 H -0.106 1.106 5 H -0.183 1.183 6 H -0.163 1.163 7 C -0.981 4.981 8 H 0.067 0.933 9 S 1.619 4.381 10 O -0.969 6.969 11 C -0.614 4.614 12 C -0.092 4.092 13 C -0.034 4.034 14 F -0.139 7.139 15 C -0.091 4.091 16 C -0.198 4.198 17 C 0.170 3.830 18 N -0.389 5.389 19 H 0.091 0.909 20 H 0.114 0.886 21 H 0.188 0.812 22 H 0.200 0.800 23 H 0.255 0.745 24 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 10.664 -4.843 -11.296 16.272 hybrid contribution -1.561 -0.511 2.560 3.042 sum 9.103 -5.354 -8.735 13.706 Atomic orbital electron populations 1.70112 1.08550 1.29823 1.44293 1.25629 0.95338 1.02808 0.89348 0.86906 0.81423 0.79618 0.84337 1.10637 1.18306 1.16280 1.27900 1.11054 0.97839 1.61349 0.93304 1.66205 0.86373 0.81291 1.04275 1.92809 1.83969 1.76913 1.43227 1.27257 1.17692 1.20891 0.95605 1.20726 0.96646 0.93534 0.98273 1.17773 1.12055 0.90920 0.82634 1.91386 1.93017 1.81975 1.47510 1.21306 0.96754 1.01381 0.89664 1.21003 1.07180 0.92047 0.99551 1.17399 0.88493 0.91636 0.85506 1.42624 1.74775 1.16997 1.04495 0.90878 0.88553 0.81220 0.80037 0.74524 0.76171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.07 13.96 21.45 0.30 -52.77 14 2 C 0.08 4.43 5.47 84.65 0.46 4.89 14 3 Si 0.86 37.98 27.42 68.60 1.88 39.86 14 4 H -0.19 -6.31 7.11 99.48 0.71 -5.60 14 5 H -0.26 -11.35 7.11 99.48 0.71 -10.64 14 6 H -0.24 -11.17 5.95 99.48 0.59 -10.58 14 7 C -0.84 -47.76 9.88 67.73 0.67 -47.09 14 8 H 0.05 3.11 8.06 -2.91 -0.02 3.09 14 9 S 1.42 65.16 10.38 -56.49 -0.59 64.58 14 10 O -0.97 -56.95 14.95 -148.98 -2.23 -59.18 14 11 C -0.51 -21.53 5.62 22.40 0.13 -21.40 14 12 C -0.07 -3.25 9.43 22.30 0.21 -3.04 14 13 C -0.01 -0.45 7.30 22.38 0.16 -0.28 14 14 F -0.16 -6.18 17.26 44.97 0.78 -5.41 14 15 C -0.07 -2.01 10.02 22.29 0.22 -1.79 14 16 C -0.17 -4.33 9.90 22.40 0.22 -4.10 14 17 C 0.28 8.66 6.74 38.17 0.26 8.92 14 18 N -0.85 -18.81 9.02 -51.31 -0.46 -19.27 14 19 H 0.28 15.16 8.31 -92.71 -0.77 14.39 14 20 H 0.10 5.05 7.23 -2.91 -0.02 5.03 14 21 H 0.17 3.35 8.06 -2.91 -0.02 3.33 14 22 H 0.18 2.60 8.06 -2.91 -0.02 2.57 14 23 H 0.42 5.47 8.85 -92.71 -0.82 4.64 14 24 H 0.41 9.28 7.36 -92.71 -0.68 8.60 14 Total: -1.00 -82.91 233.43 1.66 -81.25 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -0.36 Total: 14.83 kcal Atomic # 6 Polarization: -66.22 SS G_CDS: 2.33 Total: -63.89 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -0.16 Total: -72.04 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -2.23 Total: -59.18 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.78 Total: -5.41 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 1.88 Total: 39.86 kcal Atomic # 16 Polarization: 65.16 SS G_CDS: -0.59 Total: 64.58 kcal Total: -82.91 1.66 -81.25 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088065710.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.103 kcal (2) G-P(sol) polarization free energy of solvation -82.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds